Wall clock time and date at job start Mon Mar 30 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 H 1.08997 * 109.47348 * 306.50655 * 3 2 1 5 5 C 1.50693 * 109.47447 * 186.50143 * 3 2 1 6 6 H 1.08003 * 120.00442 * 245.99086 * 5 3 2 7 7 C 1.37881 * 120.00266 * 65.99095 * 5 3 2 8 8 N 1.31523 * 119.99472 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00508 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47395 * 59.99360 * 9 7 5 11 11 H 1.48500 * 109.47332 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47134 * 299.99641 * 9 7 5 13 13 N 1.46906 * 109.47164 * 66.50187 * 3 2 1 14 14 C 1.46953 * 110.99893 * 278.89572 * 13 3 2 15 15 C 1.53054 * 109.36663 * 176.80799 * 14 13 3 16 16 N 1.46957 * 109.35937 * 58.39677 * 15 14 13 17 17 C 1.46953 * 110.88552 * 300.68203 * 16 15 14 18 18 H 1.09002 * 109.48714 * 299.35792 * 17 16 15 19 19 C 1.52999 * 109.49518 * 179.28987 * 17 16 15 20 20 C 1.46957 * 110.99923 * 155.09090 * 13 3 2 21 21 H 1.08998 * 109.48741 * 303.17817 * 20 13 3 22 22 C 1.53000 * 109.48869 * 63.22463 * 20 13 3 23 23 H 1.08996 * 109.46875 * 279.16260 * 1 2 3 24 24 H 1.08999 * 109.46782 * 39.16564 * 1 2 3 25 25 H 1.09000 * 109.46308 * 159.16681 * 1 2 3 26 26 H 1.08998 * 109.47366 * 240.00621 * 2 1 3 27 27 H 1.09002 * 109.47771 * 119.99719 * 2 1 3 28 28 H 0.96993 * 119.99528 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.49201 * 56.84015 * 14 13 3 30 30 H 1.09001 * 109.50610 * 296.78810 * 14 13 3 31 31 H 1.08991 * 109.48791 * 298.43579 * 15 14 13 32 32 H 1.08991 * 109.50741 * 178.37223 * 15 14 13 33 33 H 1.00901 * 111.00134 * 64.55519 * 16 15 14 34 34 H 1.09004 * 109.46868 * 59.99894 * 19 17 16 35 35 H 1.08996 * 109.47947 * 179.97438 * 19 17 16 36 36 H 1.09005 * 109.47019 * 300.00512 * 19 17 16 37 37 H 1.09006 * 109.47043 * 59.99825 * 22 20 13 38 38 H 1.08994 * 109.46750 * 179.97438 * 22 20 13 39 39 H 1.09001 * 109.47050 * 299.99591 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5848 1.9889 -0.8260 5 6 3.5383 1.4456 -0.1609 6 1 4.1673 1.7948 0.6447 7 6 4.1065 1.0027 -1.3365 8 7 3.3406 0.5771 -2.3174 9 14 5.9637 1.0059 -1.5357 10 1 6.5748 0.1417 -0.4941 11 1 6.3183 0.4855 -2.8806 12 1 6.4748 2.3927 -1.3906 13 7 1.6826 2.0883 1.2702 14 6 0.2893 2.5550 1.2499 15 6 -0.0671 3.1483 2.6150 16 7 0.8513 4.2541 2.9203 17 6 2.2447 3.7875 2.9406 18 1 2.3615 3.0246 3.7104 19 6 3.1732 4.9652 3.2433 20 6 2.6011 3.1941 1.5755 21 1 3.6250 2.8210 1.5969 22 6 2.4739 4.2750 0.5002 23 1 -0.3633 0.1636 1.0145 24 1 -0.3633 0.7968 -0.6490 25 1 -0.3632 -0.9605 -0.3655 26 1 1.8934 -0.5137 -0.8900 27 1 1.8935 -0.5138 0.8900 28 1 3.7402 0.2652 -3.1443 29 1 -0.3722 1.7159 1.0342 30 1 0.1721 3.3176 0.4800 31 1 0.0235 2.3784 3.3810 32 1 -1.0910 3.5214 2.5936 33 1 0.7337 5.0131 2.2660 34 1 2.9179 5.3888 4.2147 35 1 4.2065 4.6187 3.2587 36 1 3.0566 5.7272 2.4727 37 1 1.4500 4.6484 0.4796 38 1 3.1549 5.0951 0.7272 39 1 2.7259 3.8516 -0.4721 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307265042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:17 Heat of formation + Delta-G solvation = -5.287859 kcal Electronic energy + Delta-G solvation = -17422.501662 eV Core-core repulsion = 14978.421819 eV Total energy + Delta-G solvation = -2444.079843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95057 -37.06665 -34.37377 -33.75657 -32.66394 -29.29939 -28.99482 -27.17759 -25.52927 -24.08368 -22.75772 -21.31887 -19.99361 -18.19485 -17.44332 -16.45084 -16.08724 -15.94364 -15.67643 -15.03194 -14.84123 -14.42802 -14.17758 -13.80248 -13.38255 -13.20291 -13.06914 -12.87304 -12.74685 -12.67386 -12.41670 -12.16757 -11.98483 -11.89062 -11.77757 -11.60849 -11.38540 -11.23126 -10.53807 -10.45050 -9.19886 -8.76803 -8.12152 -6.21313 1.39198 1.40388 1.47105 2.40614 3.18105 3.29743 3.45519 4.11534 4.23223 4.36288 4.39030 4.41042 4.52562 4.57623 4.59400 4.64277 4.68174 4.77552 4.88472 4.96347 5.03497 5.07048 5.17839 5.23125 5.26827 5.30420 5.38696 5.49984 5.55980 5.68490 5.73879 5.88378 6.14312 6.25291 6.42489 6.56292 6.84638 6.97626 7.47492 8.94896 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025711 B = 0.011279 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.764960 B = 2481.809896 C = 3300.364191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 C 0.229 3.771 4 H -0.033 1.033 5 C -0.521 4.521 6 H 0.065 0.935 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.529 5.529 14 C -0.006 4.006 15 C 0.068 3.932 16 N -0.676 5.676 17 C 0.094 3.906 18 H 0.072 0.928 19 C -0.137 4.137 20 C 0.055 3.945 21 H 0.074 0.926 22 C -0.166 4.166 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.259 0.741 29 H 0.093 0.907 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.337 0.663 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.097 6.247 8.259 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 C 0.122 3.878 4 H -0.016 1.016 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.253 5.253 14 C -0.135 4.135 15 C -0.062 4.062 16 N -0.306 5.306 17 C -0.016 4.016 18 H 0.090 0.910 19 C -0.195 4.195 20 C -0.055 4.055 21 H 0.092 0.908 22 C -0.225 4.225 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.136 5.767 9.151 11.580 hybrid contribution 1.150 0.085 -2.491 2.745 sum -2.985 5.853 6.660 9.355 Atomic orbital electron populations 1.21917 0.96595 0.99995 1.00652 1.21351 0.94274 0.98776 0.99541 1.18981 0.93804 0.90692 0.84339 1.01573 1.21656 0.92546 1.41943 0.99806 0.91700 1.25657 1.01793 0.95198 0.95819 1.70061 1.36259 1.44100 1.05479 0.85755 0.81229 0.78542 0.77019 1.19715 1.21361 1.19671 1.62345 1.01482 1.27036 1.34473 1.23363 0.92061 0.99898 0.98205 1.22055 0.96614 0.93378 0.94145 1.60941 1.04485 1.10039 1.55096 1.21597 0.88569 0.96915 0.94550 0.90993 1.21785 0.98458 0.96986 1.02290 1.22342 0.98211 0.89970 0.94968 0.90822 1.22257 1.00594 0.99608 0.99991 0.91451 0.94594 0.93475 0.93279 0.94679 0.93220 0.88954 0.97086 0.90874 0.88805 0.84454 0.90932 0.92043 0.92230 0.93402 0.91340 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.27 71.98 0.60 -4.63 16 2 C -0.10 -4.84 5.50 30.60 0.17 -4.67 16 3 C 0.23 11.39 0.96 44.17 0.04 11.43 16 4 H -0.03 -1.90 7.39 -2.39 -0.02 -1.91 16 5 C -0.52 -28.00 6.81 25.60 0.17 -27.83 16 6 H 0.07 3.45 5.28 -2.91 -0.02 3.44 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.19 11.76 21.45 0.25 -52.94 16 9 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.53 -21.94 4.50 -849.77 -3.83 -25.77 16 14 C -0.01 -0.20 4.68 86.31 0.40 0.20 16 15 C 0.07 1.91 6.72 86.31 0.58 2.49 16 16 N -0.68 -18.71 6.48 -491.15 -3.18 -21.90 16 17 C 0.09 2.87 2.95 44.92 0.13 3.00 16 18 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.14 -3.41 9.06 71.98 0.65 -2.75 16 20 C 0.06 2.10 2.04 44.92 0.09 2.19 16 21 H 0.07 3.19 5.38 -2.39 -0.01 3.18 16 22 C -0.17 -6.18 7.78 71.98 0.56 -5.62 16 23 H 0.07 2.32 6.40 -2.39 -0.02 2.31 16 24 H 0.03 1.41 7.31 -2.39 -0.02 1.40 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 2.67 6.44 -2.39 -0.02 2.65 16 27 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.09 3.18 3.72 -2.39 -0.01 3.17 16 30 H 0.01 0.41 6.33 -2.39 -0.02 0.40 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.34 8.92 7.18 -89.69 -0.64 8.28 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.42 6.40 -2.38 -0.02 1.40 16 37 H 0.05 1.64 5.10 -2.38 -0.01 1.63 16 38 H 0.07 2.21 6.40 -2.39 -0.02 2.19 16 39 H 0.03 1.51 6.39 -2.39 -0.02 1.49 16 Total: -1.00 -58.62 278.71 -0.49 -59.11 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.39 Total: 20.81 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 3.85 Total: -24.95 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -6.76 Total: -100.60 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.62 -0.49 -59.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307265042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.824 kcal (2) G-P(sol) polarization free energy of solvation -58.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds