Wall clock time and date at job start Mon Mar 30 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08996 * 110.90815 * 51.12651 * 3 2 1 5 5 C 1.55380 * 111.17102 * 287.10760 * 3 2 1 6 6 N 1.47844 * 104.83918 * 204.90508 * 5 3 2 7 7 C 1.46900 * 110.99982 * 146.36889 * 6 5 3 8 8 C 1.53000 * 109.47216 * 174.28337 * 7 6 5 9 9 C 1.53007 * 109.46887 * 294.28266 * 7 6 5 10 10 C 1.47443 * 108.56494 * 24.09964 * 6 5 3 11 11 C 1.54312 * 107.23612 * 359.01050 * 10 6 5 12 12 H 1.09002 * 110.70596 * 96.10119 * 11 10 6 13 13 N 1.46504 * 110.70639 * 219.16284 * 11 10 6 14 14 C 1.36940 * 119.99679 * 271.19341 * 13 11 10 15 15 H 1.08002 * 120.00010 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99829 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99688 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47633 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47254 * 119.99935 * 18 16 14 21 21 H 1.48504 * 109.47067 * 239.99706 * 18 16 14 22 22 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47694 * 300.00777 * 1 2 3 24 24 H 1.09007 * 109.46977 * 60.00613 * 1 2 3 25 25 H 1.08996 * 109.47225 * 239.99120 * 2 1 3 26 26 H 1.09007 * 109.46977 * 119.99387 * 2 1 3 27 27 H 1.08999 * 110.35214 * 86.05752 * 5 3 2 28 28 H 1.09007 * 110.44781 * 323.79625 * 5 3 2 29 29 H 1.08998 * 109.47315 * 54.27875 * 7 6 5 30 30 H 1.08998 * 109.47355 * 59.99563 * 8 7 6 31 31 H 1.08998 * 109.47153 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.46712 * 299.99923 * 8 7 6 33 33 H 1.08994 * 109.47272 * 60.00123 * 9 7 6 34 34 H 1.09005 * 109.46370 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.46824 * 299.99910 * 9 7 6 36 36 H 1.08997 * 109.88254 * 239.60085 * 10 6 5 37 37 H 1.09003 * 109.88840 * 118.42215 * 10 6 5 38 38 H 0.96991 * 120.00541 * 91.19168 * 13 11 10 39 39 H 0.97006 * 119.99634 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5671 2.0222 0.7927 5 6 1.8252 2.1136 -1.3848 6 7 2.8479 3.1792 -1.4519 7 6 3.3288 3.3614 -2.8279 8 6 4.2759 4.5618 -2.8824 9 6 4.0737 2.1032 -3.2787 10 6 3.9566 2.8233 -0.5474 11 6 3.5856 1.4855 0.1263 12 1 4.0391 0.6481 -0.4042 13 7 3.9905 1.4847 1.5342 14 6 5.2445 1.0615 1.8858 15 1 5.9351 0.7287 1.1251 16 6 5.6283 1.0613 3.2199 17 7 4.7871 1.4683 4.1467 18 14 7.3391 0.4847 3.6993 19 1 8.0860 0.0832 2.4803 20 1 8.0611 1.5893 4.3802 21 1 7.2305 -0.6764 4.6188 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3635 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.8252 2.5429 -1.4470 28 1 1.9774 1.3905 -2.1862 29 1 2.4803 3.5377 -3.4890 30 1 5.1243 4.3855 -2.2213 31 1 4.6330 4.6967 -3.9034 32 1 3.7451 5.4581 -2.5613 33 1 3.3990 1.2480 -3.2399 34 1 4.4309 2.2387 -4.2996 35 1 4.9221 1.9269 -2.6176 36 1 4.0807 3.5978 0.2094 37 1 4.8782 2.7083 -1.1179 38 1 3.3704 1.7840 2.2174 39 1 5.0554 1.4685 5.0789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308566626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:32 Heat of formation + Delta-G solvation = 3.840686 kcal Electronic energy + Delta-G solvation = -16663.379137 eV Core-core repulsion = 14219.695137 eV Total energy + Delta-G solvation = -2443.684000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.36102 -35.48692 -33.71240 -31.81115 -30.52090 -27.50756 -27.23641 -26.83606 -23.59088 -23.01158 -20.81586 -19.74282 -18.89123 -17.06932 -16.01614 -15.45165 -14.42218 -14.25089 -14.03567 -13.50821 -13.22313 -13.15713 -12.80480 -12.47502 -12.10524 -11.97452 -11.74850 -11.59026 -11.32681 -11.09351 -10.95430 -10.84101 -10.74865 -10.47928 -10.29667 -10.11272 -10.08481 -9.75082 -9.62450 -8.91024 -7.84952 -6.92017 -5.76209 -3.04784 3.43006 3.48736 3.50853 4.35744 4.59714 4.97871 5.14530 5.20097 5.28988 5.38763 5.49259 5.55917 5.62294 5.64558 5.74427 5.86552 5.87009 5.93511 5.95577 5.98799 6.09832 6.14676 6.24925 6.29128 6.31784 6.39241 6.41474 6.55561 6.62532 6.75076 6.83475 7.12614 7.45436 7.58054 7.71032 8.42333 9.53641 10.11827 10.46817 11.46280 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.008457 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.357701 B = 3310.050986 C = 4148.646750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.103 4.103 4 H 0.081 0.919 5 C 0.047 3.953 6 N -0.525 5.525 7 C 0.071 3.929 8 C -0.142 4.142 9 C -0.189 4.189 10 C 0.016 3.984 11 C 0.168 3.832 12 H 0.051 0.949 13 N -0.715 5.715 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.386 0.614 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 0.953 -13.255 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.100 0.900 5 C -0.081 4.081 6 N -0.249 5.249 7 C -0.038 4.038 8 C -0.199 4.199 9 C -0.247 4.247 10 C -0.114 4.114 11 C 0.056 3.944 12 H 0.069 0.931 13 N -0.355 5.355 14 C -0.370 4.370 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.736 3.264 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.220 0.780 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.743 1.363 -13.073 14.344 hybrid contribution 1.188 -0.922 0.253 1.524 sum -4.556 0.442 -12.820 13.613 Atomic orbital electron populations 1.21776 0.96489 1.00868 1.01471 1.21405 0.94960 0.96165 1.02161 1.22638 0.97551 0.95576 0.96554 0.90048 1.23113 0.95835 0.92349 0.96838 1.63815 1.12161 1.42826 1.06058 1.21759 0.96881 0.94466 0.90690 1.21814 0.99348 0.97911 1.00876 1.22542 1.01615 0.99216 1.01368 1.23810 0.92111 1.00127 0.95387 1.21425 0.91245 0.94117 0.87588 0.93124 1.42340 1.14809 1.77563 1.00758 1.19275 0.90586 1.35446 0.91708 0.91304 1.24731 0.98078 1.02204 0.95837 1.69674 1.34795 1.53327 1.00095 0.86153 0.84207 0.77934 0.78118 1.20622 1.21872 1.21892 0.93374 0.92757 0.93209 0.92804 0.91014 0.91320 0.93708 0.90868 0.92375 0.92916 0.92135 0.92536 0.92720 0.91694 0.90392 0.93178 0.78031 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.82 37.15 0.36 -1.55 16 2 C -0.11 -1.68 5.45 -26.73 -0.15 -1.83 16 3 C -0.10 -1.75 2.63 -88.22 -0.23 -1.99 16 4 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16 5 C 0.05 0.69 5.48 -2.04 -0.01 0.68 16 6 N -0.52 -8.40 5.16 -222.98 -1.15 -9.55 16 7 C 0.07 0.96 2.90 -67.71 -0.20 0.76 16 8 C -0.14 -1.80 9.15 37.16 0.34 -1.46 16 9 C -0.19 -2.44 8.63 37.16 0.32 -2.12 16 10 C 0.02 0.30 5.35 -2.84 -0.02 0.28 16 11 C 0.17 3.39 3.05 -66.11 -0.20 3.18 16 12 H 0.05 1.06 8.00 -51.93 -0.42 0.64 16 13 N -0.71 -17.88 5.16 -51.66 -0.27 -18.15 16 14 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 18 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.58 7.76 -51.93 -0.40 0.18 16 25 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.63 5.69 -51.93 -0.30 0.33 16 29 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.73 6.28 -51.93 -0.33 0.40 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.94 6.06 -51.93 -0.31 0.63 16 36 H 0.08 1.67 8.03 -51.93 -0.42 1.25 16 37 H 0.05 0.92 4.76 -51.93 -0.25 0.68 16 38 H 0.39 10.34 7.74 -40.82 -0.32 10.02 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 300.56 15.07 4.53 4.53 Total: -1.00 -28.86 300.56 -8.06 -36.92 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.85 Total: 7.45 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.02 Total: -11.24 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.69 Total: -55.08 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.86 -8.06 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308566626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.762 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds