Wall clock time and date at job start Mon Mar 30 2020 03:02:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53001 * 109.47149 * 2 1
4 4 H 1.08996 * 110.90815 * 51.12651 * 3 2 1
5 5 C 1.55380 * 111.17102 * 287.10760 * 3 2 1
6 6 N 1.47844 * 104.83918 * 204.90508 * 5 3 2
7 7 C 1.46900 * 110.99982 * 146.36889 * 6 5 3
8 8 C 1.53000 * 109.47216 * 174.28337 * 7 6 5
9 9 C 1.53007 * 109.46887 * 294.28266 * 7 6 5
10 10 C 1.47443 * 108.56494 * 24.09964 * 6 5 3
11 11 C 1.54312 * 107.23612 * 359.01050 * 10 6 5
12 12 H 1.09002 * 110.70596 * 96.10119 * 11 10 6
13 13 N 1.46504 * 110.70639 * 219.16284 * 11 10 6
14 14 C 1.36940 * 119.99679 * 271.19341 * 13 11 10
15 15 H 1.08002 * 120.00010 * 0.02562 * 14 13 11
16 16 C 1.38812 * 119.99829 * 179.97438 * 14 13 11
17 17 N 1.31616 * 119.99932 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99688 * 180.02562 * 16 14 13
19 19 H 1.48499 * 109.47633 * 0.02562 * 18 16 14
20 20 H 1.48498 * 109.47254 * 119.99935 * 18 16 14
21 21 H 1.48504 * 109.47067 * 239.99706 * 18 16 14
22 22 H 1.08997 * 109.47377 * 180.02562 * 1 2 3
23 23 H 1.09006 * 109.47694 * 300.00777 * 1 2 3
24 24 H 1.09007 * 109.46977 * 60.00613 * 1 2 3
25 25 H 1.08996 * 109.47225 * 239.99120 * 2 1 3
26 26 H 1.09007 * 109.46977 * 119.99387 * 2 1 3
27 27 H 1.08999 * 110.35214 * 86.05752 * 5 3 2
28 28 H 1.09007 * 110.44781 * 323.79625 * 5 3 2
29 29 H 1.08998 * 109.47315 * 54.27875 * 7 6 5
30 30 H 1.08998 * 109.47355 * 59.99563 * 8 7 6
31 31 H 1.08998 * 109.47153 * 179.97438 * 8 7 6
32 32 H 1.09004 * 109.46712 * 299.99923 * 8 7 6
33 33 H 1.08994 * 109.47272 * 60.00123 * 9 7 6
34 34 H 1.09005 * 109.46370 * 180.02562 * 9 7 6
35 35 H 1.08998 * 109.46824 * 299.99910 * 9 7 6
36 36 H 1.08997 * 109.88254 * 239.60085 * 10 6 5
37 37 H 1.09003 * 109.88840 * 118.42215 * 10 6 5
38 38 H 0.96991 * 120.00541 * 91.19168 * 13 11 10
39 39 H 0.97006 * 119.99634 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5671 2.0222 0.7927
5 6 1.8252 2.1136 -1.3848
6 7 2.8479 3.1792 -1.4519
7 6 3.3288 3.3614 -2.8279
8 6 4.2759 4.5618 -2.8824
9 6 4.0737 2.1032 -3.2787
10 6 3.9566 2.8233 -0.5474
11 6 3.5856 1.4855 0.1263
12 1 4.0391 0.6481 -0.4042
13 7 3.9905 1.4847 1.5342
14 6 5.2445 1.0615 1.8858
15 1 5.9351 0.7287 1.1251
16 6 5.6283 1.0613 3.2199
17 7 4.7871 1.4683 4.1467
18 14 7.3391 0.4847 3.6993
19 1 8.0860 0.0832 2.4803
20 1 8.0611 1.5893 4.3802
21 1 7.2305 -0.6764 4.6188
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3635 0.5140 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 0.8252 2.5429 -1.4470
28 1 1.9774 1.3905 -2.1862
29 1 2.4803 3.5377 -3.4890
30 1 5.1243 4.3855 -2.2213
31 1 4.6330 4.6967 -3.9034
32 1 3.7451 5.4581 -2.5613
33 1 3.3990 1.2480 -3.2399
34 1 4.4309 2.2387 -4.2996
35 1 4.9221 1.9269 -2.6176
36 1 4.0807 3.5978 0.2094
37 1 4.8782 2.7083 -1.1179
38 1 3.3704 1.7840 2.2174
39 1 5.0554 1.4685 5.0789
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308566626.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:32
Heat of formation + Delta-G solvation = 3.840686 kcal
Electronic energy + Delta-G solvation = -16663.379137 eV
Core-core repulsion = 14219.695137 eV
Total energy + Delta-G solvation = -2443.684000 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.36102 -35.48692 -33.71240 -31.81115 -30.52090 -27.50756 -27.23641 -26.83606
-23.59088 -23.01158 -20.81586 -19.74282 -18.89123 -17.06932 -16.01614 -15.45165
-14.42218 -14.25089 -14.03567 -13.50821 -13.22313 -13.15713 -12.80480 -12.47502
-12.10524 -11.97452 -11.74850 -11.59026 -11.32681 -11.09351 -10.95430 -10.84101
-10.74865 -10.47928 -10.29667 -10.11272 -10.08481 -9.75082 -9.62450 -8.91024
-7.84952 -6.92017 -5.76209 -3.04784 3.43006 3.48736 3.50853 4.35744
4.59714 4.97871 5.14530 5.20097 5.28988 5.38763 5.49259 5.55917
5.62294 5.64558 5.74427 5.86552 5.87009 5.93511 5.95577 5.98799
6.09832 6.14676 6.24925 6.29128 6.31784 6.39241 6.41474 6.55561
6.62532 6.75076 6.83475 7.12614 7.45436 7.58054 7.71032 8.42333
9.53641 10.11827 10.46817 11.46280
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022623 B = 0.008457 C = 0.006748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.357701 B = 3310.050986 C = 4148.646750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.109 4.109
3 C -0.103 4.103
4 H 0.081 0.919
5 C 0.047 3.953
6 N -0.525 5.525
7 C 0.071 3.929
8 C -0.142 4.142
9 C -0.189 4.189
10 C 0.016 3.984
11 C 0.168 3.832
12 H 0.051 0.949
13 N -0.715 5.715
14 C -0.239 4.239
15 H 0.069 0.931
16 C -0.012 4.012
17 N -0.931 5.931
18 Si 0.905 3.095
19 H -0.281 1.281
20 H -0.292 1.292
21 H -0.292 1.292
22 H 0.047 0.953
23 H 0.053 0.947
24 H 0.049 0.951
25 H 0.053 0.947
26 H 0.071 0.929
27 H 0.068 0.932
28 H 0.045 0.955
29 H 0.073 0.927
30 H 0.057 0.943
31 H 0.052 0.948
32 H 0.060 0.940
33 H 0.056 0.944
34 H 0.054 0.946
35 H 0.064 0.936
36 H 0.078 0.922
37 H 0.050 0.950
38 H 0.386 0.614
39 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.716 0.953 -13.255 14.466
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.147 4.147
3 C -0.123 4.123
4 H 0.100 0.900
5 C -0.081 4.081
6 N -0.249 5.249
7 C -0.038 4.038
8 C -0.199 4.199
9 C -0.247 4.247
10 C -0.114 4.114
11 C 0.056 3.944
12 H 0.069 0.931
13 N -0.355 5.355
14 C -0.370 4.370
15 H 0.087 0.913
16 C -0.209 4.209
17 N -0.579 5.579
18 Si 0.736 3.264
19 H -0.206 1.206
20 H -0.219 1.219
21 H -0.219 1.219
22 H 0.066 0.934
23 H 0.072 0.928
24 H 0.068 0.932
25 H 0.072 0.928
26 H 0.090 0.910
27 H 0.087 0.913
28 H 0.063 0.937
29 H 0.091 0.909
30 H 0.076 0.924
31 H 0.071 0.929
32 H 0.079 0.921
33 H 0.075 0.925
34 H 0.073 0.927
35 H 0.083 0.917
36 H 0.096 0.904
37 H 0.068 0.932
38 H 0.220 0.780
39 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -5.743 1.363 -13.073 14.344
hybrid contribution 1.188 -0.922 0.253 1.524
sum -4.556 0.442 -12.820 13.613
Atomic orbital electron populations
1.21776 0.96489 1.00868 1.01471 1.21405 0.94960 0.96165 1.02161
1.22638 0.97551 0.95576 0.96554 0.90048 1.23113 0.95835 0.92349
0.96838 1.63815 1.12161 1.42826 1.06058 1.21759 0.96881 0.94466
0.90690 1.21814 0.99348 0.97911 1.00876 1.22542 1.01615 0.99216
1.01368 1.23810 0.92111 1.00127 0.95387 1.21425 0.91245 0.94117
0.87588 0.93124 1.42340 1.14809 1.77563 1.00758 1.19275 0.90586
1.35446 0.91708 0.91304 1.24731 0.98078 1.02204 0.95837 1.69674
1.34795 1.53327 1.00095 0.86153 0.84207 0.77934 0.78118 1.20622
1.21872 1.21892 0.93374 0.92757 0.93209 0.92804 0.91014 0.91320
0.93708 0.90868 0.92375 0.92916 0.92135 0.92536 0.92720 0.91694
0.90392 0.93178 0.78031 0.93563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.91 9.82 37.15 0.36 -1.55 16
2 C -0.11 -1.68 5.45 -26.73 -0.15 -1.83 16
3 C -0.10 -1.75 2.63 -88.22 -0.23 -1.99 16
4 H 0.08 1.50 8.01 -51.93 -0.42 1.08 16
5 C 0.05 0.69 5.48 -2.04 -0.01 0.68 16
6 N -0.52 -8.40 5.16 -222.98 -1.15 -9.55 16
7 C 0.07 0.96 2.90 -67.71 -0.20 0.76 16
8 C -0.14 -1.80 9.15 37.16 0.34 -1.46 16
9 C -0.19 -2.44 8.63 37.16 0.32 -2.12 16
10 C 0.02 0.30 5.35 -2.84 -0.02 0.28 16
11 C 0.17 3.39 3.05 -66.11 -0.20 3.18 16
12 H 0.05 1.06 8.00 -51.93 -0.42 0.64 16
13 N -0.71 -17.88 5.16 -51.66 -0.27 -18.15 16
14 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16
15 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16
16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
17 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16
18 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16
19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
24 H 0.05 0.58 7.76 -51.93 -0.40 0.18 16
25 H 0.05 0.78 7.98 -51.93 -0.41 0.37 16
26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
28 H 0.04 0.63 5.69 -51.93 -0.30 0.33 16
29 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16
30 H 0.06 0.81 6.81 -51.93 -0.35 0.46 16
31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.06 0.73 6.28 -51.93 -0.33 0.40 16
34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.06 0.94 6.06 -51.93 -0.31 0.63 16
36 H 0.08 1.67 8.03 -51.93 -0.42 1.25 16
37 H 0.05 0.92 4.76 -51.93 -0.25 0.68 16
38 H 0.39 10.34 7.74 -40.82 -0.32 10.02 16
39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16
LS Contribution 300.56 15.07 4.53 4.53
Total: -1.00 -28.86 300.56 -8.06 -36.92
By element:
Atomic # 1 Polarization: 14.29 SS G_CDS: -6.85 Total: 7.45 kcal
Atomic # 6 Polarization: -11.21 SS G_CDS: -0.02 Total: -11.24 kcal
Atomic # 7 Polarization: -54.38 SS G_CDS: -0.69 Total: -55.08 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -28.86 -8.06 -36.92 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308566626.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.762 kcal
(2) G-P(sol) polarization free energy of solvation -28.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds