Wall clock time and date at job start Mon Mar 30 2020 03:02:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53001 * 109.47149 * 2 1
4 4 H 1.08996 * 110.90815 * 51.12651 * 3 2 1
5 5 C 1.55380 * 111.17102 * 287.10760 * 3 2 1
6 6 N 1.47844 * 104.83918 * 204.90508 * 5 3 2
7 7 C 1.46900 * 110.99982 * 146.36889 * 6 5 3
8 8 C 1.53000 * 109.47216 * 174.28337 * 7 6 5
9 9 C 1.53007 * 109.46887 * 294.28266 * 7 6 5
10 10 C 1.47443 * 108.56494 * 24.09964 * 6 5 3
11 11 C 1.54312 * 107.23612 * 359.01050 * 10 6 5
12 12 H 1.09002 * 110.70596 * 96.10119 * 11 10 6
13 13 N 1.46504 * 110.70639 * 219.16284 * 11 10 6
14 14 C 1.36940 * 119.99679 * 271.19341 * 13 11 10
15 15 H 1.08002 * 120.00010 * 0.02562 * 14 13 11
16 16 C 1.38812 * 119.99829 * 179.97438 * 14 13 11
17 17 N 1.31616 * 119.99932 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99688 * 180.02562 * 16 14 13
19 19 H 1.48499 * 109.47633 * 0.02562 * 18 16 14
20 20 H 1.48498 * 109.47254 * 119.99935 * 18 16 14
21 21 H 1.48504 * 109.47067 * 239.99706 * 18 16 14
22 22 H 1.08997 * 109.47377 * 180.02562 * 1 2 3
23 23 H 1.09006 * 109.47694 * 300.00777 * 1 2 3
24 24 H 1.09007 * 109.46977 * 60.00613 * 1 2 3
25 25 H 1.08996 * 109.47225 * 239.99120 * 2 1 3
26 26 H 1.09007 * 109.46977 * 119.99387 * 2 1 3
27 27 H 1.08999 * 110.35214 * 86.05752 * 5 3 2
28 28 H 1.09007 * 110.44781 * 323.79625 * 5 3 2
29 29 H 1.08998 * 109.47315 * 54.27875 * 7 6 5
30 30 H 1.08998 * 109.47355 * 59.99563 * 8 7 6
31 31 H 1.08998 * 109.47153 * 179.97438 * 8 7 6
32 32 H 1.09004 * 109.46712 * 299.99923 * 8 7 6
33 33 H 1.08994 * 109.47272 * 60.00123 * 9 7 6
34 34 H 1.09005 * 109.46370 * 180.02562 * 9 7 6
35 35 H 1.08998 * 109.46824 * 299.99910 * 9 7 6
36 36 H 1.08997 * 109.88254 * 239.60085 * 10 6 5
37 37 H 1.09003 * 109.88840 * 118.42215 * 10 6 5
38 38 H 0.96991 * 120.00541 * 91.19168 * 13 11 10
39 39 H 0.97006 * 119.99634 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5671 2.0222 0.7927
5 6 1.8252 2.1136 -1.3848
6 7 2.8479 3.1792 -1.4519
7 6 3.3288 3.3614 -2.8279
8 6 4.2759 4.5618 -2.8824
9 6 4.0737 2.1032 -3.2787
10 6 3.9566 2.8233 -0.5474
11 6 3.5856 1.4855 0.1263
12 1 4.0391 0.6481 -0.4042
13 7 3.9905 1.4847 1.5342
14 6 5.2445 1.0615 1.8858
15 1 5.9351 0.7287 1.1251
16 6 5.6283 1.0613 3.2199
17 7 4.7871 1.4683 4.1467
18 14 7.3391 0.4847 3.6993
19 1 8.0860 0.0832 2.4803
20 1 8.0611 1.5893 4.3802
21 1 7.2305 -0.6764 4.6188
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3635 0.5140 0.8899
24 1 -0.3633 0.5138 -0.8901
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 0.8252 2.5429 -1.4470
28 1 1.9774 1.3905 -2.1862
29 1 2.4803 3.5377 -3.4890
30 1 5.1243 4.3855 -2.2213
31 1 4.6330 4.6967 -3.9034
32 1 3.7451 5.4581 -2.5613
33 1 3.3990 1.2480 -3.2399
34 1 4.4309 2.2387 -4.2996
35 1 4.9221 1.9269 -2.6176
36 1 4.0807 3.5978 0.2094
37 1 4.8782 2.7083 -1.1179
38 1 3.3704 1.7840 2.2174
39 1 5.0554 1.4685 5.0789
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308566626.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:31
Heat of formation + Delta-G solvation = -15.031328 kcal
Electronic energy + Delta-G solvation = -16664.197489 eV
Core-core repulsion = 14219.695137 eV
Total energy + Delta-G solvation = -2444.502352 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.71904 -36.90658 -35.46406 -33.29574 -32.21150 -28.90398 -28.70787 -27.94119
-25.59196 -24.19771 -22.28588 -21.17072 -20.17892 -19.10036 -17.34024 -17.07471
-16.11088 -15.52137 -15.39379 -15.20957 -14.62281 -14.45350 -14.24973 -13.76185
-13.46254 -13.28482 -13.08081 -12.89552 -12.79103 -12.61119 -12.52918 -12.25559
-12.13552 -12.03122 -11.76072 -11.63647 -11.59230 -11.36830 -11.20164 -10.90182
-9.25059 -8.88834 -7.95110 -5.23615 1.45394 1.46075 1.55856 2.54354
3.11091 3.37157 3.68078 3.82876 3.96430 4.14113 4.20967 4.24155
4.39489 4.45837 4.50406 4.51377 4.65610 4.72142 4.75633 4.79515
4.87169 4.95305 5.01656 5.05774 5.12781 5.18827 5.25712 5.36243
5.40084 5.41926 5.44519 5.50413 5.60130 6.11202 6.27532 6.34505
7.32577 8.08355 8.32254 9.28459
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022623 B = 0.008457 C = 0.006748
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1237.357701 B = 3310.050986 C = 4148.646750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.104 4.104
3 C -0.097 4.097
4 H 0.062 0.938
5 C 0.055 3.945
6 N -0.532 5.532
7 C 0.068 3.932
8 C -0.140 4.140
9 C -0.184 4.184
10 C 0.033 3.967
11 C 0.161 3.839
12 H 0.045 0.955
13 N -0.726 5.726
14 C -0.238 4.238
15 H 0.072 0.928
16 C -0.074 4.074
17 N -0.968 5.968
18 Si 0.970 3.030
19 H -0.267 1.267
20 H -0.294 1.294
21 H -0.293 1.293
22 H 0.061 0.939
23 H 0.046 0.954
24 H 0.069 0.931
25 H 0.066 0.934
26 H 0.039 0.961
27 H 0.088 0.912
28 H 0.063 0.937
29 H 0.095 0.905
30 H 0.037 0.963
31 H 0.077 0.923
32 H 0.056 0.944
33 H 0.058 0.942
34 H 0.077 0.923
35 H 0.042 0.958
36 H 0.044 0.956
37 H 0.051 0.949
38 H 0.373 0.627
39 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.157 0.646 -15.686 16.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.142 4.142
3 C -0.117 4.117
4 H 0.081 0.919
5 C -0.073 4.073
6 N -0.256 5.256
7 C -0.041 4.041
8 C -0.197 4.197
9 C -0.242 4.242
10 C -0.098 4.098
11 C 0.051 3.949
12 H 0.063 0.937
13 N -0.365 5.365
14 C -0.370 4.370
15 H 0.090 0.910
16 C -0.267 4.267
17 N -0.619 5.619
18 Si 0.799 3.201
19 H -0.191 1.191
20 H -0.221 1.221
21 H -0.220 1.220
22 H 0.080 0.920
23 H 0.065 0.935
24 H 0.088 0.912
25 H 0.085 0.915
26 H 0.058 0.942
27 H 0.106 0.894
28 H 0.081 0.919
29 H 0.113 0.887
30 H 0.057 0.943
31 H 0.096 0.904
32 H 0.076 0.924
33 H 0.077 0.923
34 H 0.096 0.904
35 H 0.061 0.939
36 H 0.062 0.938
37 H 0.069 0.931
38 H 0.205 0.795
39 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -6.189 1.054 -15.568 16.786
hybrid contribution 1.287 -0.802 0.917 1.772
sum -4.902 0.252 -14.651 15.452
Atomic orbital electron populations
1.21722 0.94097 1.02056 1.02083 1.21349 0.97018 0.94662 1.01218
1.22561 0.94718 0.96767 0.97610 0.91911 1.23124 0.96309 0.92305
0.95517 1.63785 1.11266 1.43189 1.07382 1.21923 0.97923 0.95007
0.89218 1.21807 0.98455 0.97486 1.01965 1.22486 1.00736 0.98826
1.02189 1.23381 0.93409 0.97836 0.95150 1.21632 0.93711 0.94526
0.85041 0.93690 1.42486 1.13908 1.77572 1.02571 1.19614 0.91498
1.33995 0.91854 0.90981 1.25525 1.01822 1.03352 0.95972 1.69829
1.36673 1.55293 1.00085 0.85123 0.79969 0.77044 0.77942 1.19126
1.22132 1.21994 0.91952 0.93492 0.91225 0.91509 0.94174 0.89426
0.91921 0.88651 0.94348 0.90388 0.92445 0.92312 0.90409 0.93863
0.93800 0.93086 0.79531 0.94062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.36 9.82 71.98 0.71 -2.65 16
2 C -0.10 -3.13 5.45 30.59 0.17 -2.96 16
3 C -0.10 -3.24 2.63 -9.24 -0.02 -3.26 16
4 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16
5 C 0.05 1.50 5.48 86.94 0.48 1.97 16
6 N -0.53 -16.20 5.16 -859.37 -4.44 -20.64 16
7 C 0.07 1.64 2.90 44.92 0.13 1.77 16
8 C -0.14 -3.26 9.15 71.98 0.66 -2.60 16
9 C -0.18 -4.24 8.63 71.98 0.62 -3.62 16
10 C 0.03 1.24 5.35 86.64 0.46 1.70 16
11 C 0.16 6.56 3.05 46.17 0.14 6.70 16
12 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16
13 N -0.73 -37.54 5.16 -317.36 -1.64 -39.18 16
14 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16
15 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16
16 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16
17 N -0.97 -60.13 13.06 21.65 0.28 -59.84 16
18 Si 0.97 46.80 29.55 68.60 2.03 48.82 16
19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
20 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16
21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16
22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16
23 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16
24 H 0.07 1.38 7.76 -2.38 -0.02 1.36 16
25 H 0.07 1.81 7.98 -2.39 -0.02 1.79 16
26 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16
27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16
28 H 0.06 1.52 5.69 -2.38 -0.01 1.50 16
29 H 0.10 1.97 8.13 -2.39 -0.02 1.95 16
30 H 0.04 1.03 6.81 -2.39 -0.02 1.02 16
31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16
32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16
33 H 0.06 1.32 6.28 -2.39 -0.02 1.31 16
34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16
35 H 0.04 1.18 6.06 -2.39 -0.01 1.17 16
36 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16
37 H 0.05 1.89 4.76 -2.39 -0.01 1.88 16
38 H 0.37 20.90 7.74 -92.71 -0.72 20.18 16
39 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16
Total: -1.00 -63.03 300.56 1.17 -61.87
By element:
Atomic # 1 Polarization: 28.05 SS G_CDS: 0.29 Total: 28.34 kcal
Atomic # 6 Polarization: -24.01 SS G_CDS: 4.64 Total: -19.37 kcal
Atomic # 7 Polarization: -113.87 SS G_CDS: -5.79 Total: -119.66 kcal
Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal
Total: -63.03 1.17 -61.87 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308566626.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.835 kcal
(2) G-P(sol) polarization free energy of solvation -63.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.198 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds