Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08996 * 110.90815 * 51.12651 * 3 2 1 5 5 C 1.55380 * 111.17102 * 287.10760 * 3 2 1 6 6 N 1.47844 * 104.83918 * 204.90508 * 5 3 2 7 7 C 1.46900 * 110.99982 * 146.36889 * 6 5 3 8 8 C 1.53000 * 109.47216 * 174.28337 * 7 6 5 9 9 C 1.53007 * 109.46887 * 294.28266 * 7 6 5 10 10 C 1.47443 * 108.56494 * 24.09964 * 6 5 3 11 11 C 1.54312 * 107.23612 * 359.01050 * 10 6 5 12 12 H 1.09002 * 110.70596 * 96.10119 * 11 10 6 13 13 N 1.46504 * 110.70639 * 219.16284 * 11 10 6 14 14 C 1.36940 * 119.99679 * 271.19341 * 13 11 10 15 15 H 1.08002 * 120.00010 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99829 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99932 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99688 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47633 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47254 * 119.99935 * 18 16 14 21 21 H 1.48504 * 109.47067 * 239.99706 * 18 16 14 22 22 H 1.08997 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47694 * 300.00777 * 1 2 3 24 24 H 1.09007 * 109.46977 * 60.00613 * 1 2 3 25 25 H 1.08996 * 109.47225 * 239.99120 * 2 1 3 26 26 H 1.09007 * 109.46977 * 119.99387 * 2 1 3 27 27 H 1.08999 * 110.35214 * 86.05752 * 5 3 2 28 28 H 1.09007 * 110.44781 * 323.79625 * 5 3 2 29 29 H 1.08998 * 109.47315 * 54.27875 * 7 6 5 30 30 H 1.08998 * 109.47355 * 59.99563 * 8 7 6 31 31 H 1.08998 * 109.47153 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.46712 * 299.99923 * 8 7 6 33 33 H 1.08994 * 109.47272 * 60.00123 * 9 7 6 34 34 H 1.09005 * 109.46370 * 180.02562 * 9 7 6 35 35 H 1.08998 * 109.46824 * 299.99910 * 9 7 6 36 36 H 1.08997 * 109.88254 * 239.60085 * 10 6 5 37 37 H 1.09003 * 109.88840 * 118.42215 * 10 6 5 38 38 H 0.96991 * 120.00541 * 91.19168 * 13 11 10 39 39 H 0.97006 * 119.99634 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5671 2.0222 0.7927 5 6 1.8252 2.1136 -1.3848 6 7 2.8479 3.1792 -1.4519 7 6 3.3288 3.3614 -2.8279 8 6 4.2759 4.5618 -2.8824 9 6 4.0737 2.1032 -3.2787 10 6 3.9566 2.8233 -0.5474 11 6 3.5856 1.4855 0.1263 12 1 4.0391 0.6481 -0.4042 13 7 3.9905 1.4847 1.5342 14 6 5.2445 1.0615 1.8858 15 1 5.9351 0.7287 1.1251 16 6 5.6283 1.0613 3.2199 17 7 4.7871 1.4683 4.1467 18 14 7.3391 0.4847 3.6993 19 1 8.0860 0.0832 2.4803 20 1 8.0611 1.5893 4.3802 21 1 7.2305 -0.6764 4.6188 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3635 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.8252 2.5429 -1.4470 28 1 1.9774 1.3905 -2.1862 29 1 2.4803 3.5377 -3.4890 30 1 5.1243 4.3855 -2.2213 31 1 4.6330 4.6967 -3.9034 32 1 3.7451 5.4581 -2.5613 33 1 3.3990 1.2480 -3.2399 34 1 4.4309 2.2387 -4.2996 35 1 4.9221 1.9269 -2.6176 36 1 4.0807 3.5978 0.2094 37 1 4.8782 2.7083 -1.1179 38 1 3.3704 1.7840 2.2174 39 1 5.0554 1.4685 5.0789 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308566626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = -15.031328 kcal Electronic energy + Delta-G solvation = -16664.197489 eV Core-core repulsion = 14219.695137 eV Total energy + Delta-G solvation = -2444.502352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71904 -36.90658 -35.46406 -33.29574 -32.21150 -28.90398 -28.70787 -27.94119 -25.59196 -24.19771 -22.28588 -21.17072 -20.17892 -19.10036 -17.34024 -17.07471 -16.11088 -15.52137 -15.39379 -15.20957 -14.62281 -14.45350 -14.24973 -13.76185 -13.46254 -13.28482 -13.08081 -12.89552 -12.79103 -12.61119 -12.52918 -12.25559 -12.13552 -12.03122 -11.76072 -11.63647 -11.59230 -11.36830 -11.20164 -10.90182 -9.25059 -8.88834 -7.95110 -5.23615 1.45394 1.46075 1.55856 2.54354 3.11091 3.37157 3.68078 3.82876 3.96430 4.14113 4.20967 4.24155 4.39489 4.45837 4.50406 4.51377 4.65610 4.72142 4.75633 4.79515 4.87169 4.95305 5.01656 5.05774 5.12781 5.18827 5.25712 5.36243 5.40084 5.41926 5.44519 5.50413 5.60130 6.11202 6.27532 6.34505 7.32577 8.08355 8.32254 9.28459 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.008457 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.357701 B = 3310.050986 C = 4148.646750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.097 4.097 4 H 0.062 0.938 5 C 0.055 3.945 6 N -0.532 5.532 7 C 0.068 3.932 8 C -0.140 4.140 9 C -0.184 4.184 10 C 0.033 3.967 11 C 0.161 3.839 12 H 0.045 0.955 13 N -0.726 5.726 14 C -0.238 4.238 15 H 0.072 0.928 16 C -0.074 4.074 17 N -0.968 5.968 18 Si 0.970 3.030 19 H -0.267 1.267 20 H -0.294 1.294 21 H -0.293 1.293 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.373 0.627 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 0.646 -15.686 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.117 4.117 4 H 0.081 0.919 5 C -0.073 4.073 6 N -0.256 5.256 7 C -0.041 4.041 8 C -0.197 4.197 9 C -0.242 4.242 10 C -0.098 4.098 11 C 0.051 3.949 12 H 0.063 0.937 13 N -0.365 5.365 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.221 1.221 21 H -0.220 1.220 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.205 0.795 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.189 1.054 -15.568 16.786 hybrid contribution 1.287 -0.802 0.917 1.772 sum -4.902 0.252 -14.651 15.452 Atomic orbital electron populations 1.21722 0.94097 1.02056 1.02083 1.21349 0.97018 0.94662 1.01218 1.22561 0.94718 0.96767 0.97610 0.91911 1.23124 0.96309 0.92305 0.95517 1.63785 1.11266 1.43189 1.07382 1.21923 0.97923 0.95007 0.89218 1.21807 0.98455 0.97486 1.01965 1.22486 1.00736 0.98826 1.02189 1.23381 0.93409 0.97836 0.95150 1.21632 0.93711 0.94526 0.85041 0.93690 1.42486 1.13908 1.77572 1.02571 1.19614 0.91498 1.33995 0.91854 0.90981 1.25525 1.01822 1.03352 0.95972 1.69829 1.36673 1.55293 1.00085 0.85123 0.79969 0.77044 0.77942 1.19126 1.22132 1.21994 0.91952 0.93492 0.91225 0.91509 0.94174 0.89426 0.91921 0.88651 0.94348 0.90388 0.92445 0.92312 0.90409 0.93863 0.93800 0.93086 0.79531 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.82 71.98 0.71 -2.65 16 2 C -0.10 -3.13 5.45 30.59 0.17 -2.96 16 3 C -0.10 -3.24 2.63 -9.24 -0.02 -3.26 16 4 H 0.06 2.34 8.01 -2.39 -0.02 2.32 16 5 C 0.05 1.50 5.48 86.94 0.48 1.97 16 6 N -0.53 -16.20 5.16 -859.37 -4.44 -20.64 16 7 C 0.07 1.64 2.90 44.92 0.13 1.77 16 8 C -0.14 -3.26 9.15 71.98 0.66 -2.60 16 9 C -0.18 -4.24 8.63 71.98 0.62 -3.62 16 10 C 0.03 1.24 5.35 86.64 0.46 1.70 16 11 C 0.16 6.56 3.05 46.17 0.14 6.70 16 12 H 0.05 1.88 8.00 -2.39 -0.02 1.86 16 13 N -0.73 -37.54 5.16 -317.36 -1.64 -39.18 16 14 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 16 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 17 N -0.97 -60.13 13.06 21.65 0.28 -59.84 16 18 Si 0.97 46.80 29.55 68.60 2.03 48.82 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.07 1.38 7.76 -2.38 -0.02 1.36 16 25 H 0.07 1.81 7.98 -2.39 -0.02 1.79 16 26 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 1.52 5.69 -2.38 -0.01 1.50 16 29 H 0.10 1.97 8.13 -2.39 -0.02 1.95 16 30 H 0.04 1.03 6.81 -2.39 -0.02 1.02 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.32 6.28 -2.39 -0.02 1.31 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.04 1.18 6.06 -2.39 -0.01 1.17 16 36 H 0.04 1.95 8.03 -2.39 -0.02 1.93 16 37 H 0.05 1.89 4.76 -2.39 -0.01 1.88 16 38 H 0.37 20.90 7.74 -92.71 -0.72 20.18 16 39 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -63.03 300.56 1.17 -61.87 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.29 Total: 28.34 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.64 Total: -19.37 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -5.79 Total: -119.66 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.82 kcal Total: -63.03 1.17 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308566626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.835 kcal (2) G-P(sol) polarization free energy of solvation -63.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds