Wall clock time and date at job start Mon Mar 30 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47109 * 2 1 4 4 H 1.09005 * 110.78528 * 308.24476 * 3 2 1 5 5 C 1.54934 * 110.72536 * 71.49762 * 3 2 1 6 6 N 1.48535 * 103.22985 * 155.77442 * 5 3 2 7 7 C 1.46895 * 111.00087 * 200.28319 * 6 5 3 8 8 C 1.53004 * 109.47091 * 177.26811 * 7 6 5 9 9 C 1.53005 * 109.46875 * 297.26352 * 7 6 5 10 10 C 1.47904 * 105.81791 * 320.79144 * 6 5 3 11 11 C 1.53998 * 107.05803 * 25.33036 * 10 6 5 12 12 H 1.09002 * 110.31004 * 239.76046 * 11 10 6 13 13 N 1.46498 * 110.31077 * 117.68989 * 11 10 6 14 14 C 1.36943 * 119.99752 * 86.17741 * 13 11 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 11 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 11 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47213 * 60.00246 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47081 * 299.99875 * 18 16 14 22 22 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46966 * 299.99950 * 1 2 3 24 24 H 1.09003 * 109.46752 * 60.00092 * 1 2 3 25 25 H 1.08998 * 109.47340 * 239.99660 * 2 1 3 26 26 H 1.09003 * 109.46752 * 119.99908 * 2 1 3 27 27 H 1.09001 * 110.66897 * 37.33551 * 5 3 2 28 28 H 1.08999 * 110.81031 * 274.27053 * 5 3 2 29 29 H 1.08994 * 109.47550 * 57.26475 * 7 6 5 30 30 H 1.08996 * 109.46930 * 299.99588 * 8 7 6 31 31 H 1.08994 * 109.47199 * 59.99448 * 8 7 6 32 32 H 1.08998 * 109.46755 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47048 * 60.00319 * 9 7 6 34 34 H 1.08998 * 109.47464 * 179.97438 * 9 7 6 35 35 H 1.08994 * 109.47132 * 300.00379 * 9 7 6 36 36 H 1.09003 * 109.91622 * 265.98039 * 10 6 5 37 37 H 1.09001 * 109.92026 * 144.68074 * 10 6 5 38 38 H 0.97001 * 120.00384 * 266.46097 * 13 11 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5742 2.0174 -0.8004 5 6 1.7892 2.1127 1.3742 6 7 2.8154 3.1855 1.4214 7 6 3.0624 3.6172 2.8036 8 6 4.1708 4.6719 2.8182 9 6 1.7811 4.2159 3.3876 10 6 4.0356 2.6030 0.8221 11 6 3.5805 1.4781 -0.1260 12 1 4.0091 0.5251 0.1844 13 7 3.9709 1.7855 -1.5041 14 6 5.2162 1.4390 -1.9564 15 1 5.9087 0.9351 -1.2985 16 6 5.5882 1.7354 -3.2605 17 7 4.7443 2.3499 -4.0621 18 14 7.2866 1.2621 -3.8777 19 1 7.4554 -0.2102 -3.7823 20 1 7.4353 1.6873 -5.2928 21 1 8.3194 1.9336 -3.0485 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.9413 1.3989 2.1838 28 1 0.7864 2.5373 1.4207 29 1 3.3688 2.7599 3.4028 30 1 5.0835 4.2455 2.4022 31 1 3.8644 5.5292 2.2190 32 1 4.3537 4.9925 3.8438 33 1 0.9915 3.4645 3.3773 34 1 1.9642 4.5358 4.4134 35 1 1.4747 5.0732 2.7884 36 1 4.6744 2.1934 1.6046 37 1 4.5744 3.3663 0.2607 38 1 3.3489 2.2381 -2.0950 39 1 5.0041 2.5567 -4.9735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308566628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:35 Heat of formation + Delta-G solvation = 0.159568 kcal Electronic energy + Delta-G solvation = -16501.684486 eV Core-core repulsion = 14057.840861 eV Total energy + Delta-G solvation = -2443.843625 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.11991 -35.52739 -33.71792 -32.00708 -30.47882 -28.12894 -27.25740 -26.08567 -23.44428 -23.04248 -20.53576 -19.92904 -19.21380 -16.96030 -15.94099 -15.18843 -14.75423 -14.46540 -13.64664 -13.51547 -13.39941 -12.98360 -12.60541 -12.44544 -12.28606 -12.00201 -11.84050 -11.50736 -11.46900 -11.07515 -10.85773 -10.75339 -10.71448 -10.52580 -10.33713 -10.12047 -10.08521 -9.83963 -9.58855 -8.86009 -7.93640 -6.91235 -5.72918 -3.01429 3.45747 3.50231 3.51195 4.33438 4.61865 5.03851 5.10328 5.15669 5.27294 5.42119 5.51360 5.55254 5.64112 5.70548 5.74124 5.83042 5.87740 5.89306 5.97738 6.03471 6.04084 6.10496 6.25939 6.29828 6.31286 6.36270 6.43689 6.49120 6.58718 6.71806 6.87566 7.04981 7.43953 7.56243 7.72881 8.45900 9.56852 10.15928 10.50970 11.49522 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.007925 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.398422 B = 3532.423490 C = 4408.892994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.083 0.917 5 C 0.044 3.956 6 N -0.511 5.511 7 C 0.067 3.933 8 C -0.144 4.144 9 C -0.142 4.142 10 C 0.016 3.984 11 C 0.175 3.825 12 H 0.051 0.949 13 N -0.715 5.715 14 C -0.241 4.241 15 H 0.068 0.932 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.287 1.287 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.086 0.914 38 H 0.386 0.614 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -0.174 13.257 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.116 4.116 4 H 0.102 0.898 5 C -0.084 4.084 6 N -0.236 5.236 7 C -0.042 4.042 8 C -0.201 4.201 9 C -0.199 4.199 10 C -0.115 4.115 11 C 0.063 3.937 12 H 0.069 0.931 13 N -0.355 5.355 14 C -0.372 4.372 15 H 0.086 0.914 16 C -0.208 4.208 17 N -0.579 5.579 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.220 0.780 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.696 0.235 12.919 14.553 hybrid contribution 1.126 -0.730 -0.035 1.342 sum -5.571 -0.494 12.884 14.045 Atomic orbital electron populations 1.21776 0.96418 1.00870 1.01557 1.21477 0.95132 0.96313 1.01978 1.22378 0.97230 0.95337 0.96676 0.89818 1.23195 0.96280 0.92272 0.96641 1.64817 1.08256 1.34503 1.15976 1.21773 0.95703 0.96955 0.89758 1.21829 0.98165 0.99207 1.00930 1.21820 0.97011 1.01298 0.99790 1.23897 0.91221 0.99150 0.97186 1.21089 0.91264 0.94566 0.86763 0.93102 1.42440 1.15644 1.70242 1.07196 1.19201 0.91331 1.31381 0.95293 0.91383 1.24725 0.98071 1.01362 0.96626 1.69659 1.35032 1.46411 1.06846 0.86299 0.84270 0.78025 0.77771 1.21333 1.21707 1.21335 0.93368 0.93175 0.92689 0.91235 0.92723 0.94578 0.90969 0.94833 0.92431 0.91865 0.92932 0.92946 0.92864 0.91893 0.95515 0.89539 0.78003 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.80 37.16 0.36 -1.51 16 2 C -0.11 -1.67 5.31 -26.73 -0.14 -1.81 16 3 C -0.10 -1.65 2.75 -88.76 -0.24 -1.89 16 4 H 0.08 1.58 7.74 -51.93 -0.40 1.17 16 5 C 0.04 0.67 4.38 -1.90 -0.01 0.66 16 6 N -0.51 -8.48 5.11 -222.50 -1.14 -9.61 16 7 C 0.07 0.94 2.35 -67.71 -0.16 0.78 16 8 C -0.14 -1.92 9.09 37.16 0.34 -1.58 16 9 C -0.14 -1.66 9.11 37.16 0.34 -1.32 16 10 C 0.02 0.31 5.20 -2.75 -0.01 0.29 16 11 C 0.17 3.57 3.21 -66.57 -0.21 3.35 16 12 H 0.05 1.06 7.82 -51.93 -0.41 0.66 16 13 N -0.71 -18.10 5.07 -52.11 -0.26 -18.37 16 14 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.77 7.99 -51.93 -0.42 0.35 16 27 H 0.04 0.52 7.76 -51.93 -0.40 0.11 16 28 H 0.07 1.01 7.64 -51.93 -0.40 0.61 16 29 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 30 H 0.06 0.83 7.05 -51.93 -0.37 0.46 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.59 7.00 -51.93 -0.36 0.23 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.48 7.52 -51.93 -0.39 0.09 16 37 H 0.09 1.90 7.92 -51.93 -0.41 1.49 16 38 H 0.39 10.49 7.54 -40.82 -0.31 10.18 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 305.55 15.07 4.60 4.60 Total: -1.00 -29.24 305.55 -8.26 -37.50 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.18 Total: 6.31 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.01 Total: -10.33 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.68 Total: -55.60 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.24 -8.26 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308566628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.664 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds