Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47349 * 2 1 4 4 H 1.08998 * 110.28872 * 307.12771 * 3 2 1 5 5 C 1.54379 * 110.32534 * 69.36218 * 3 2 1 6 6 N 1.48563 * 104.59438 * 142.74867 * 5 3 2 7 7 C 1.46899 * 110.99865 * 200.96073 * 6 5 3 8 8 C 1.53006 * 109.47163 * 175.29539 * 7 6 5 9 9 C 1.52999 * 109.47571 * 295.29232 * 7 6 5 10 10 C 1.48558 * 104.22239 * 320.51639 * 6 5 3 11 11 C 1.54262 * 110.32577 * 184.99933 * 3 2 1 12 12 H 1.09002 * 110.32019 * 122.20615 * 11 3 2 13 13 N 1.46497 * 110.40714 * 0.04555 * 11 3 2 14 14 C 1.36940 * 120.00017 * 157.85607 * 13 11 3 15 15 H 1.08005 * 119.99583 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00371 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00338 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99642 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47447 * 89.99773 * 18 16 14 20 20 H 1.48499 * 109.47161 * 209.99747 * 18 16 14 21 21 H 1.48496 * 109.47553 * 329.99760 * 18 16 14 22 22 H 1.09003 * 109.47497 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47271 * 299.99614 * 1 2 3 24 24 H 1.08998 * 109.47465 * 60.00064 * 1 2 3 25 25 H 1.08999 * 109.46914 * 239.99743 * 2 1 3 26 26 H 1.09006 * 109.46879 * 120.00158 * 2 1 3 27 27 H 1.09001 * 110.41125 * 23.97223 * 5 3 2 28 28 H 1.08997 * 110.41290 * 261.52718 * 5 3 2 29 29 H 1.09000 * 109.47162 * 55.29578 * 7 6 5 30 30 H 1.09001 * 109.46801 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46998 * 299.99678 * 8 7 6 32 32 H 1.09000 * 109.47050 * 59.99970 * 8 7 6 33 33 H 1.09000 * 109.47160 * 300.00348 * 9 7 6 34 34 H 1.09002 * 109.46719 * 60.00068 * 9 7 6 35 35 H 1.08993 * 109.47839 * 179.97438 * 9 7 6 36 36 H 1.09006 * 110.40733 * 158.26370 * 10 6 5 37 37 H 1.08999 * 110.41564 * 280.58478 * 10 6 5 38 38 H 0.96990 * 120.00117 * 337.85541 * 13 11 3 39 39 H 0.96995 * 119.99492 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5842 2.0044 -0.8151 5 6 1.7377 2.1180 1.3548 6 7 2.9221 2.9754 1.6180 7 6 3.0342 3.2937 3.0477 8 6 4.3250 4.0768 3.2962 9 6 1.8339 4.1395 3.4777 10 6 4.0744 2.1556 1.1632 11 6 3.5773 1.4672 -0.1261 12 1 3.8760 2.0428 -1.0021 13 7 4.1049 0.1031 -0.2105 14 6 5.3356 -0.1217 -0.7674 15 1 5.9173 0.7067 -1.1441 16 6 5.8358 -1.4141 -0.8470 17 7 7.0189 -1.6301 -1.3819 18 14 4.8300 -2.8467 -0.1948 19 1 3.9668 -3.3799 -1.2792 20 1 5.7431 -3.9162 0.2821 21 1 3.9802 -2.3830 0.9313 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6299 1.3678 2.1381 28 1 0.8362 2.7266 1.2833 29 1 3.0530 2.3695 3.6253 30 1 4.4083 4.3125 4.3571 31 1 5.1801 3.4742 2.9900 32 1 4.3062 5.0009 2.7186 33 1 1.8151 5.0637 2.9001 34 1 0.9144 3.5817 3.3007 35 1 1.9168 4.3753 4.5385 36 1 4.9324 2.7925 0.9474 37 1 4.3337 1.4126 1.9173 38 1 3.5827 -0.6407 0.1282 39 1 7.3682 -2.5333 -1.4377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308566629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = 11.119130 kcal Electronic energy + Delta-G solvation = -16729.493293 eV Core-core repulsion = 14286.124910 eV Total energy + Delta-G solvation = -2443.368383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.33270 -35.87077 -33.53695 -32.11523 -30.91691 -28.16857 -27.59210 -26.25652 -23.50093 -22.77591 -21.22922 -19.80591 -18.63464 -17.76326 -15.99878 -15.23913 -14.85786 -14.34039 -14.00153 -13.82857 -13.40669 -13.06857 -12.77092 -12.43414 -12.32486 -11.99895 -11.96337 -11.82807 -11.53805 -11.08071 -11.01616 -10.86269 -10.75885 -10.57807 -10.33575 -10.29626 -10.16251 -9.80215 -9.53193 -8.92479 -8.14710 -7.26256 -5.77387 -3.12535 3.34700 3.37228 3.43133 4.23447 4.57604 4.93741 5.02391 5.09892 5.18450 5.33486 5.45534 5.47366 5.53021 5.60478 5.66088 5.69167 5.81301 5.83523 5.91018 5.96152 5.99485 6.00546 6.13126 6.20379 6.26967 6.27225 6.34603 6.36977 6.53621 6.65496 6.72082 6.86344 7.22347 7.42195 8.01762 8.42668 9.21230 9.93598 10.13497 11.41145 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.008858 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.470441 B = 3160.093247 C = 3841.978073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.099 4.099 4 H 0.078 0.922 5 C 0.042 3.958 6 N -0.509 5.509 7 C 0.065 3.935 8 C -0.144 4.144 9 C -0.141 4.141 10 C 0.016 3.984 11 C 0.182 3.818 12 H 0.066 0.934 13 N -0.746 5.746 14 C -0.243 4.243 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.878 3.122 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.279 1.279 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.365 0.635 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 8.348 7.888 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.119 4.119 4 H 0.096 0.904 5 C -0.086 4.086 6 N -0.234 5.234 7 C -0.044 4.044 8 C -0.202 4.202 9 C -0.198 4.198 10 C -0.114 4.114 11 C 0.072 3.928 12 H 0.084 0.916 13 N -0.390 5.390 14 C -0.373 4.373 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.581 5.581 18 Si 0.709 3.291 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.205 1.205 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.201 0.799 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.089 8.872 7.500 16.766 hybrid contribution -0.457 -1.923 1.039 2.233 sum -12.546 6.948 8.539 16.691 Atomic orbital electron populations 1.21797 0.96398 1.01085 1.01360 1.21552 0.94819 0.96675 1.02715 1.22180 0.97325 0.95549 0.96836 0.90405 1.23107 0.94323 0.94595 0.96544 1.65432 1.03339 1.39221 1.15430 1.21771 0.95919 0.97465 0.89289 1.21834 0.96834 1.00758 1.00740 1.21807 0.97305 1.00375 1.00345 1.23942 0.93414 0.95187 0.98848 1.20891 0.89997 0.86675 0.95278 0.91608 1.43073 1.20244 1.02456 1.73242 1.19132 0.92684 0.94285 1.31195 0.89111 1.24649 0.96572 0.96878 1.00924 1.69696 1.17699 1.20501 1.50226 0.86651 0.79851 0.83710 0.78920 1.20926 1.21687 1.20504 0.93210 0.93155 0.92814 0.90584 0.92354 0.94361 0.90985 0.94533 0.92792 0.92279 0.91953 0.91940 0.92977 0.92778 0.90788 0.93680 0.79948 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.78 37.16 0.36 -1.52 16 2 C -0.12 -1.91 3.95 -26.74 -0.11 -2.02 16 3 C -0.10 -1.60 3.06 -89.24 -0.27 -1.87 16 4 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 5 C 0.04 0.62 4.35 -2.18 -0.01 0.61 16 6 N -0.51 -7.88 5.20 -222.02 -1.15 -9.03 16 7 C 0.06 0.87 2.44 -67.71 -0.17 0.71 16 8 C -0.14 -1.82 9.05 37.16 0.34 -1.48 16 9 C -0.14 -1.56 9.15 37.16 0.34 -1.22 16 10 C 0.02 0.30 5.05 -2.18 -0.01 0.29 16 11 C 0.18 3.59 3.67 -66.55 -0.24 3.34 16 12 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 13 N -0.75 -17.56 4.37 -52.09 -0.23 -17.79 16 14 C -0.24 -6.83 10.45 -15.06 -0.16 -6.98 16 15 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -29.34 13.97 55.49 0.78 -28.56 16 18 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 21 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.58 7.58 -51.93 -0.39 0.18 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.36 7.42 -51.93 -0.39 0.98 16 26 H 0.06 1.00 7.15 -51.93 -0.37 0.63 16 27 H 0.04 0.57 7.51 -51.93 -0.39 0.18 16 28 H 0.07 0.93 7.70 -51.93 -0.40 0.54 16 29 H 0.04 0.53 7.97 -51.93 -0.41 0.11 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.82 6.94 -51.93 -0.36 0.46 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.56 7.07 -51.93 -0.37 0.20 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.38 7.67 -51.93 -0.40 0.98 16 37 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 38 H 0.36 8.43 2.93 -40.82 -0.12 8.31 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -29.90 297.76 -7.84 -37.74 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.98 Total: 5.80 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.02 Total: -10.08 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.61 Total: -55.38 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.90 -7.84 -37.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308566629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.860 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds