Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52989 * 109.47349 * 2 1 4 4 H 1.08998 * 110.28872 * 307.12771 * 3 2 1 5 5 C 1.54379 * 110.32534 * 69.36218 * 3 2 1 6 6 N 1.48563 * 104.59438 * 142.74867 * 5 3 2 7 7 C 1.46899 * 110.99865 * 200.96073 * 6 5 3 8 8 C 1.53006 * 109.47163 * 175.29539 * 7 6 5 9 9 C 1.52999 * 109.47571 * 295.29232 * 7 6 5 10 10 C 1.48558 * 104.22239 * 320.51639 * 6 5 3 11 11 C 1.54262 * 110.32577 * 184.99933 * 3 2 1 12 12 H 1.09002 * 110.32019 * 122.20615 * 11 3 2 13 13 N 1.46497 * 110.40714 * 0.04555 * 11 3 2 14 14 C 1.36940 * 120.00017 * 157.85607 * 13 11 3 15 15 H 1.08005 * 119.99583 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00371 * 179.97438 * 14 13 11 17 17 N 1.31621 * 120.00338 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99642 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47447 * 89.99773 * 18 16 14 20 20 H 1.48499 * 109.47161 * 209.99747 * 18 16 14 21 21 H 1.48496 * 109.47553 * 329.99760 * 18 16 14 22 22 H 1.09003 * 109.47497 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47271 * 299.99614 * 1 2 3 24 24 H 1.08998 * 109.47465 * 60.00064 * 1 2 3 25 25 H 1.08999 * 109.46914 * 239.99743 * 2 1 3 26 26 H 1.09006 * 109.46879 * 120.00158 * 2 1 3 27 27 H 1.09001 * 110.41125 * 23.97223 * 5 3 2 28 28 H 1.08997 * 110.41290 * 261.52718 * 5 3 2 29 29 H 1.09000 * 109.47162 * 55.29578 * 7 6 5 30 30 H 1.09001 * 109.46801 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.46998 * 299.99678 * 8 7 6 32 32 H 1.09000 * 109.47050 * 59.99970 * 8 7 6 33 33 H 1.09000 * 109.47160 * 300.00348 * 9 7 6 34 34 H 1.09002 * 109.46719 * 60.00068 * 9 7 6 35 35 H 1.08993 * 109.47839 * 179.97438 * 9 7 6 36 36 H 1.09006 * 110.40733 * 158.26370 * 10 6 5 37 37 H 1.08999 * 110.41564 * 280.58478 * 10 6 5 38 38 H 0.96990 * 120.00117 * 337.85541 * 13 11 3 39 39 H 0.96995 * 119.99492 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5842 2.0044 -0.8151 5 6 1.7377 2.1180 1.3548 6 7 2.9221 2.9754 1.6180 7 6 3.0342 3.2937 3.0477 8 6 4.3250 4.0768 3.2962 9 6 1.8339 4.1395 3.4777 10 6 4.0744 2.1556 1.1632 11 6 3.5773 1.4672 -0.1261 12 1 3.8760 2.0428 -1.0021 13 7 4.1049 0.1031 -0.2105 14 6 5.3356 -0.1217 -0.7674 15 1 5.9173 0.7067 -1.1441 16 6 5.8358 -1.4141 -0.8470 17 7 7.0189 -1.6301 -1.3819 18 14 4.8300 -2.8467 -0.1948 19 1 3.9668 -3.3799 -1.2792 20 1 5.7431 -3.9162 0.2821 21 1 3.9802 -2.3830 0.9313 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6299 1.3678 2.1381 28 1 0.8362 2.7266 1.2833 29 1 3.0530 2.3695 3.6253 30 1 4.4083 4.3125 4.3571 31 1 5.1801 3.4742 2.9900 32 1 4.3062 5.0009 2.7186 33 1 1.8151 5.0637 2.9001 34 1 0.9144 3.5817 3.3007 35 1 1.9168 4.3753 4.5385 36 1 4.9324 2.7925 0.9474 37 1 4.3337 1.4126 1.9173 38 1 3.5827 -0.6407 0.1282 39 1 7.3682 -2.5333 -1.4377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308566629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = -8.736047 kcal Electronic energy + Delta-G solvation = -16730.354278 eV Core-core repulsion = 14286.124910 eV Total energy + Delta-G solvation = -2444.229368 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68983 -37.23947 -35.30929 -33.48562 -32.76657 -29.39372 -29.01695 -27.41078 -25.21155 -24.25140 -22.62935 -20.96508 -20.13341 -19.80514 -17.32931 -16.88007 -16.07650 -16.01608 -15.48900 -15.31819 -14.83606 -14.51480 -14.18860 -13.70159 -13.61688 -13.43149 -13.09298 -13.00356 -12.91952 -12.70492 -12.46347 -12.23664 -12.15336 -12.04357 -11.84495 -11.65116 -11.52857 -11.38004 -11.27737 -10.98849 -9.46595 -9.29331 -8.04656 -5.37492 1.31555 1.35208 1.41819 2.44211 2.97420 3.25833 3.63272 3.77765 3.83665 3.98994 4.10144 4.19070 4.35691 4.43964 4.44477 4.54219 4.62801 4.67148 4.76815 4.82685 4.93144 4.96615 4.98446 5.03637 5.07187 5.12255 5.20430 5.23505 5.29581 5.40535 5.43948 5.47320 5.72293 5.93345 6.19817 6.21497 7.06049 7.82449 8.01910 9.17188 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.008858 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.470441 B = 3160.093247 C = 3841.978073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.092 0.908 5 C 0.048 3.952 6 N -0.508 5.508 7 C 0.059 3.941 8 C -0.142 4.142 9 C -0.133 4.133 10 C 0.029 3.971 11 C 0.169 3.831 12 H 0.049 0.951 13 N -0.746 5.746 14 C -0.230 4.230 15 H 0.056 0.944 16 C -0.061 4.061 17 N -0.983 5.983 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.294 1.294 21 H -0.258 1.258 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.025 0.975 38 H 0.369 0.631 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 8.855 9.430 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 C -0.111 4.111 4 H 0.110 0.890 5 C -0.079 4.079 6 N -0.233 5.233 7 C -0.050 4.050 8 C -0.199 4.199 9 C -0.191 4.191 10 C -0.102 4.102 11 C 0.060 3.940 12 H 0.067 0.933 13 N -0.391 5.391 14 C -0.361 4.361 15 H 0.074 0.926 16 C -0.253 4.253 17 N -0.633 5.633 18 Si 0.773 3.227 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.182 1.182 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.206 0.794 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.201 9.423 9.064 20.050 hybrid contribution 0.531 -1.952 0.542 2.094 sum -14.670 7.471 9.606 19.060 Atomic orbital electron populations 1.21737 0.93306 1.02106 1.02717 1.21510 0.97507 0.95827 1.00905 1.22149 0.93974 0.96419 0.98546 0.88980 1.23144 0.94739 0.94782 0.95271 1.65463 1.02330 1.38329 1.17141 1.21930 0.97635 0.97752 0.87687 1.21823 0.95679 1.00246 1.02188 1.21755 0.95990 0.99813 1.01499 1.23591 0.94351 0.94686 0.97528 1.21111 0.93042 0.84589 0.95247 0.93301 1.43029 1.18747 1.04374 1.72974 1.19084 0.93814 0.93300 1.29892 0.92567 1.25429 0.97880 0.99876 1.02091 1.69876 1.19911 1.21019 1.52527 0.85552 0.78403 0.79675 0.79030 1.19965 1.22084 1.18247 0.92464 0.91477 0.91742 0.92947 0.93614 0.94254 0.88129 0.95351 0.90600 0.94461 0.91772 0.91766 0.92293 0.90920 0.92097 0.95684 0.79403 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.78 71.98 0.70 -2.36 16 2 C -0.12 -3.56 3.95 30.59 0.12 -3.44 16 3 C -0.09 -2.76 3.06 -9.90 -0.03 -2.79 16 4 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 5 C 0.05 1.26 4.35 86.45 0.38 1.64 16 6 N -0.51 -14.83 5.20 -856.33 -4.45 -19.28 16 7 C 0.06 1.46 2.44 44.92 0.11 1.57 16 8 C -0.14 -3.39 9.05 71.98 0.65 -2.74 16 9 C -0.13 -2.47 9.15 71.98 0.66 -1.81 16 10 C 0.03 1.08 5.05 86.45 0.44 1.51 16 11 C 0.17 6.70 3.67 45.89 0.17 6.87 16 12 H 0.05 2.08 8.11 -2.39 -0.02 2.06 16 13 N -0.75 -35.47 4.37 -318.70 -1.39 -36.86 16 14 C -0.23 -13.33 10.45 84.03 0.88 -12.45 16 15 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 16 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 17 N -0.98 -63.81 13.97 21.65 0.30 -63.51 16 18 Si 0.95 46.13 27.74 68.60 1.90 48.03 16 19 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 21 H -0.26 -11.49 6.52 99.48 0.65 -10.84 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.07 1.24 7.58 -2.38 -0.02 1.22 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.81 7.42 -2.39 -0.02 1.79 16 26 H 0.05 1.47 7.15 -2.38 -0.02 1.45 16 27 H 0.04 1.04 7.51 -2.39 -0.02 1.03 16 28 H 0.10 2.13 7.70 -2.39 -0.02 2.11 16 29 H 0.03 0.77 7.97 -2.39 -0.02 0.75 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.03 6.94 -2.39 -0.02 1.01 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.02 7.07 -2.39 -0.02 1.01 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 2.36 7.67 -2.38 -0.02 2.34 16 37 H 0.02 1.01 7.89 -2.39 -0.02 0.99 16 38 H 0.37 16.85 2.93 -92.72 -0.27 16.57 16 39 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -66.04 297.76 1.56 -64.47 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.66 Total: 24.36 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.54 Total: -17.21 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -5.54 Total: -119.65 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Total: -66.04 1.56 -64.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308566629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.739 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds