Wall clock time and date at job start Mon Mar 30 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47480 * 111.00171 * 265.97194 * 4 3 2 6 6 C 1.53513 * 87.93170 * 221.29782 * 5 4 3 7 7 N 1.46908 * 114.16911 * 139.66977 * 6 5 4 8 8 C 1.46903 * 110.99670 * 111.15756 * 7 6 5 9 9 C 1.52999 * 109.47087 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47485 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47296 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99911 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47323 * 59.99561 * 15 13 11 17 17 H 1.48502 * 109.47426 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46998 * 299.99938 * 15 13 11 19 19 C 1.47482 * 110.99764 * 169.99993 * 4 3 2 20 20 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 21 21 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 24 24 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 27 27 H 1.08999 * 113.47664 * 336.06792 * 5 4 3 28 28 H 1.08994 * 113.47488 * 106.52987 * 5 4 3 29 29 H 1.08997 * 114.34322 * 272.36212 * 6 5 4 30 30 H 1.00896 * 110.99681 * 235.11276 * 7 6 5 31 31 H 1.09003 * 109.47251 * 300.00157 * 8 7 6 32 32 H 1.09002 * 109.46949 * 60.00179 * 8 7 6 33 33 H 1.08999 * 109.46925 * 300.00601 * 9 8 7 34 34 H 1.08998 * 109.47086 * 59.99725 * 9 8 7 35 35 H 1.08999 * 109.47457 * 300.00185 * 10 9 8 36 36 H 1.09002 * 109.46823 * 59.99970 * 10 9 8 37 37 H 0.96998 * 120.00032 * 180.02562 * 14 13 11 38 38 H 1.08994 * 113.48196 * 253.46980 * 19 4 3 39 39 H 1.09003 * 113.47819 * 23.94188 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0381 1.5390 1.3726 6 6 5.0941 2.5164 0.8375 7 7 5.3656 3.6542 1.7262 8 6 6.7135 3.5616 2.3030 9 6 6.9589 4.7607 3.2211 10 6 8.3628 4.6647 3.8213 11 6 8.6047 5.8461 4.7250 12 1 7.8339 6.5908 4.8583 13 6 9.8100 5.9764 5.3818 14 7 10.7484 5.0693 5.2199 15 14 10.1095 7.4404 6.5025 16 1 9.1037 7.4415 7.5950 17 1 11.4728 7.3479 7.0841 18 1 9.9904 8.6962 5.7189 19 6 4.0374 2.7985 -0.2397 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6765 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.3409 1.9949 2.0756 28 1 4.4594 0.6042 1.7422 29 1 5.9986 2.0387 0.4612 30 1 5.2391 4.5299 1.2413 31 1 6.7999 2.6400 2.8787 32 1 7.4523 3.5600 1.5016 33 1 6.8723 5.6825 2.6457 34 1 6.2200 4.7620 4.0224 35 1 8.4498 3.7430 4.3966 36 1 9.1014 4.6637 3.0197 37 1 11.5962 5.1608 5.6822 38 1 4.4581 2.9311 -1.2364 39 1 3.3400 3.5906 0.0330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379157329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:14 Heat of formation + Delta-G solvation = 11.369591 kcal Electronic energy + Delta-G solvation = -15141.585519 eV Core-core repulsion = 12698.227997 eV Total energy + Delta-G solvation = -2443.357522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24861 -35.93260 -34.37167 -33.04066 -30.94243 -28.45748 -26.13175 -25.92189 -23.78316 -22.26334 -21.18922 -20.42442 -19.45953 -16.34313 -16.19912 -15.92441 -15.66197 -14.98217 -14.45063 -14.21188 -13.63530 -13.56890 -12.92183 -12.72452 -12.47575 -12.28220 -11.89932 -11.86021 -11.39582 -11.37491 -10.92947 -10.86637 -10.71538 -10.60014 -10.49190 -10.42569 -9.68497 -9.35584 -9.11523 -8.98300 -8.32553 -8.23166 -5.97721 -3.99923 3.34920 3.39009 3.41724 3.81038 4.36745 4.38419 4.49854 4.68173 4.82356 4.98112 5.07960 5.12280 5.30956 5.37838 5.38581 5.47455 5.51551 5.56141 5.75305 5.77007 5.78823 5.81551 5.89846 6.03046 6.05530 6.21440 6.33077 6.72587 6.78106 6.93515 7.14660 7.33412 7.58301 7.70259 7.85533 8.02710 8.45825 9.07145 9.63884 11.13740 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.074740 B = 0.003370 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.540230 B = 8305.572358 C = 8366.069543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.020 3.980 4 N -0.476 5.476 5 C 0.009 3.991 6 C 0.055 3.945 7 N -0.679 5.679 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.007 4.007 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.340 0.660 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.261 0.739 38 H 0.082 0.918 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 -7.428 -11.122 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.108 4.108 4 N -0.198 5.198 5 C -0.121 4.121 6 C -0.056 4.056 7 N -0.310 5.310 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.136 4.136 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.667 -8.330 -10.970 21.622 hybrid contribution 0.451 1.650 0.391 1.755 sum -16.216 -6.679 -10.579 20.481 Atomic orbital electron populations 1.21757 0.95818 1.01707 1.01701 1.21392 0.95046 0.96229 1.02652 1.22721 0.89286 0.97667 1.01171 1.68829 1.08916 1.24169 1.17892 1.24071 0.97307 0.99632 0.91063 1.23129 0.96607 0.93663 0.92209 1.60669 1.30082 1.04143 1.36145 1.22197 0.86534 1.00953 0.97320 1.21626 1.00637 0.94729 0.97527 1.19058 0.89853 0.97147 0.95490 1.21224 0.99686 1.08125 1.26777 0.92737 1.25033 0.96231 0.96358 0.96912 1.69955 1.05691 1.34620 1.43354 0.86651 0.77206 0.83072 0.81023 1.20223 1.21310 1.20278 1.24114 0.97361 0.92043 1.00126 0.92810 0.92574 0.92819 0.91405 0.91983 0.91275 0.93550 0.90444 0.90136 0.89711 0.84155 0.91384 0.95524 0.93673 0.92604 0.96564 0.96800 0.92972 0.89980 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.00 6.26 -26.73 -0.17 -1.17 16 3 C 0.02 0.20 4.82 -3.82 -0.02 0.18 16 4 N -0.48 -5.37 6.33 -244.63 -1.55 -6.91 16 5 C 0.01 0.11 7.52 -7.54 -0.06 0.05 16 6 C 0.05 0.69 4.49 -67.49 -0.30 0.39 16 7 N -0.68 -9.77 6.59 -106.43 -0.70 -10.47 16 8 C 0.06 1.01 5.53 -3.82 -0.02 0.99 16 9 C -0.11 -2.23 5.41 -26.74 -0.14 -2.38 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.01 -0.07 7.28 -7.54 -0.05 -0.13 16 20 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.05 0.45 7.30 -51.93 -0.38 0.07 16 27 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.12 7.87 -51.93 -0.41 0.71 16 30 H 0.34 4.52 8.57 -39.29 -0.34 4.18 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.76 7.91 -51.93 -0.41 0.35 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -29.87 316.87 -10.08 -39.96 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.38 Total: -1.56 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.95 Total: -16.09 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -1.51 Total: -43.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.87 -10.08 -39.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379157329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.325 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds