Wall clock time and date at job start Mon Mar 30 2020 03:14:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1
5 5 C 1.47480 * 111.00171 * 265.97194 * 4 3 2
6 6 C 1.53513 * 87.93170 * 221.29782 * 5 4 3
7 7 N 1.46908 * 114.16911 * 139.66977 * 6 5 4
8 8 C 1.46903 * 110.99670 * 111.15756 * 7 6 5
9 9 C 1.52999 * 109.47087 * 180.02562 * 8 7 6
10 10 C 1.52991 * 109.47485 * 180.02562 * 9 8 7
11 11 C 1.50698 * 109.47296 * 179.97438 * 10 9 8
12 12 H 1.07996 * 119.99923 * 0.02562 * 11 10 9
13 13 C 1.37882 * 119.99911 * 180.02562 * 11 10 9
14 14 N 1.31512 * 119.99990 * 359.97438 * 13 11 10
15 15 Si 1.86793 * 119.99951 * 180.02562 * 13 11 10
16 16 H 1.48500 * 109.47323 * 59.99561 * 15 13 11
17 17 H 1.48502 * 109.47426 * 180.02562 * 15 13 11
18 18 H 1.48504 * 109.46998 * 299.99938 * 15 13 11
19 19 C 1.47482 * 110.99764 * 169.99993 * 4 3 2
20 20 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
21 21 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
23 23 H 1.09001 * 109.46652 * 240.00345 * 2 1 3
24 24 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
25 25 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
26 26 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
27 27 H 1.08999 * 113.47664 * 336.06792 * 5 4 3
28 28 H 1.08994 * 113.47488 * 106.52987 * 5 4 3
29 29 H 1.08997 * 114.34322 * 272.36212 * 6 5 4
30 30 H 1.00896 * 110.99681 * 235.11276 * 7 6 5
31 31 H 1.09003 * 109.47251 * 300.00157 * 8 7 6
32 32 H 1.09002 * 109.46949 * 60.00179 * 8 7 6
33 33 H 1.08999 * 109.46925 * 300.00601 * 9 8 7
34 34 H 1.08998 * 109.47086 * 59.99725 * 9 8 7
35 35 H 1.08999 * 109.47457 * 300.00185 * 10 9 8
36 36 H 1.09002 * 109.46823 * 59.99970 * 10 9 8
37 37 H 0.96998 * 120.00032 * 180.02562 * 14 13 11
38 38 H 1.08994 * 113.48196 * 253.46980 * 19 4 3
39 39 H 1.09003 * 113.47819 * 23.94188 * 19 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 3.5090 1.4425 -0.0006
5 6 4.0381 1.5390 1.3726
6 6 5.0941 2.5164 0.8375
7 7 5.3656 3.6542 1.7262
8 6 6.7135 3.5616 2.3030
9 6 6.9589 4.7607 3.2211
10 6 8.3628 4.6647 3.8213
11 6 8.6047 5.8461 4.7250
12 1 7.8339 6.5908 4.8583
13 6 9.8100 5.9764 5.3818
14 7 10.7484 5.0693 5.2199
15 14 10.1095 7.4404 6.5025
16 1 9.1037 7.4415 7.5950
17 1 11.4728 7.3479 7.0841
18 1 9.9904 8.6962 5.7189
19 6 4.0374 2.7985 -0.2397
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3633 0.5137 0.8900
23 1 1.8933 -0.5138 -0.8900
24 1 1.8934 -0.5138 0.8899
25 1 1.6765 1.9564 -0.8899
26 1 1.6767 1.9563 0.8900
27 1 3.3409 1.9949 2.0756
28 1 4.4594 0.6042 1.7422
29 1 5.9986 2.0387 0.4612
30 1 5.2391 4.5299 1.2413
31 1 6.7999 2.6400 2.8787
32 1 7.4523 3.5600 1.5016
33 1 6.8723 5.6825 2.6457
34 1 6.2200 4.7620 4.0224
35 1 8.4498 3.7430 4.3966
36 1 9.1014 4.6637 3.0197
37 1 11.5962 5.1608 5.6822
38 1 4.4581 2.9311 -1.2364
39 1 3.3400 3.5906 0.0330
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379157329.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:14
Heat of formation + Delta-G solvation = 11.369591 kcal
Electronic energy + Delta-G solvation = -15141.585519 eV
Core-core repulsion = 12698.227997 eV
Total energy + Delta-G solvation = -2443.357522 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.24861 -35.93260 -34.37167 -33.04066 -30.94243 -28.45748 -26.13175 -25.92189
-23.78316 -22.26334 -21.18922 -20.42442 -19.45953 -16.34313 -16.19912 -15.92441
-15.66197 -14.98217 -14.45063 -14.21188 -13.63530 -13.56890 -12.92183 -12.72452
-12.47575 -12.28220 -11.89932 -11.86021 -11.39582 -11.37491 -10.92947 -10.86637
-10.71538 -10.60014 -10.49190 -10.42569 -9.68497 -9.35584 -9.11523 -8.98300
-8.32553 -8.23166 -5.97721 -3.99923 3.34920 3.39009 3.41724 3.81038
4.36745 4.38419 4.49854 4.68173 4.82356 4.98112 5.07960 5.12280
5.30956 5.37838 5.38581 5.47455 5.51551 5.56141 5.75305 5.77007
5.78823 5.81551 5.89846 6.03046 6.05530 6.21440 6.33077 6.72587
6.78106 6.93515 7.14660 7.33412 7.58301 7.70259 7.85533 8.02710
8.45825 9.07145 9.63884 11.13740
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.074740 B = 0.003370 C = 0.003346
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 374.540230 B = 8305.572358 C = 8366.069543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.115 4.115
3 C 0.020 3.980
4 N -0.476 5.476
5 C 0.009 3.991
6 C 0.055 3.945
7 N -0.679 5.679
8 C 0.058 3.942
9 C -0.107 4.107
10 C 0.022 3.978
11 C -0.520 4.520
12 H 0.054 0.946
13 C 0.056 3.944
14 N -0.897 5.897
15 Si 0.893 3.107
16 H -0.277 1.277
17 H -0.287 1.287
18 H -0.277 1.277
19 C -0.007 4.007
20 H 0.053 0.947
21 H 0.055 0.945
22 H 0.053 0.947
23 H 0.067 0.933
24 H 0.061 0.939
25 H 0.069 0.931
26 H 0.046 0.954
27 H 0.077 0.923
28 H 0.080 0.920
29 H 0.085 0.915
30 H 0.340 0.660
31 H 0.068 0.932
32 H 0.026 0.974
33 H 0.044 0.956
34 H 0.055 0.945
35 H 0.016 0.984
36 H 0.014 0.986
37 H 0.261 0.739
38 H 0.082 0.918
39 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.698 -7.428 -11.122 21.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.153 4.153
3 C -0.108 4.108
4 N -0.198 5.198
5 C -0.121 4.121
6 C -0.056 4.056
7 N -0.310 5.310
8 C -0.070 4.070
9 C -0.145 4.145
10 C -0.015 4.015
11 C -0.558 4.558
12 H 0.073 0.927
13 C -0.145 4.145
14 N -0.536 5.536
15 Si 0.720 3.280
16 H -0.202 1.202
17 H -0.213 1.213
18 H -0.203 1.203
19 C -0.136 4.136
20 H 0.072 0.928
21 H 0.074 0.926
22 H 0.072 0.928
23 H 0.086 0.914
24 H 0.080 0.920
25 H 0.087 0.913
26 H 0.064 0.936
27 H 0.096 0.904
28 H 0.099 0.901
29 H 0.103 0.897
30 H 0.158 0.842
31 H 0.086 0.914
32 H 0.045 0.955
33 H 0.063 0.937
34 H 0.074 0.926
35 H 0.034 0.966
36 H 0.032 0.968
37 H 0.070 0.930
38 H 0.100 0.900
39 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -16.667 -8.330 -10.970 21.622
hybrid contribution 0.451 1.650 0.391 1.755
sum -16.216 -6.679 -10.579 20.481
Atomic orbital electron populations
1.21757 0.95818 1.01707 1.01701 1.21392 0.95046 0.96229 1.02652
1.22721 0.89286 0.97667 1.01171 1.68829 1.08916 1.24169 1.17892
1.24071 0.97307 0.99632 0.91063 1.23129 0.96607 0.93663 0.92209
1.60669 1.30082 1.04143 1.36145 1.22197 0.86534 1.00953 0.97320
1.21626 1.00637 0.94729 0.97527 1.19058 0.89853 0.97147 0.95490
1.21224 0.99686 1.08125 1.26777 0.92737 1.25033 0.96231 0.96358
0.96912 1.69955 1.05691 1.34620 1.43354 0.86651 0.77206 0.83072
0.81023 1.20223 1.21310 1.20278 1.24114 0.97361 0.92043 1.00126
0.92810 0.92574 0.92819 0.91405 0.91983 0.91275 0.93550 0.90444
0.90136 0.89711 0.84155 0.91384 0.95524 0.93673 0.92604 0.96564
0.96800 0.92972 0.89980 0.90779
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16
2 C -0.12 -1.00 6.26 -26.73 -0.17 -1.17 16
3 C 0.02 0.20 4.82 -3.82 -0.02 0.18 16
4 N -0.48 -5.37 6.33 -244.63 -1.55 -6.91 16
5 C 0.01 0.11 7.52 -7.54 -0.06 0.05 16
6 C 0.05 0.69 4.49 -67.49 -0.30 0.39 16
7 N -0.68 -9.77 6.59 -106.43 -0.70 -10.47 16
8 C 0.06 1.01 5.53 -3.82 -0.02 0.99 16
9 C -0.11 -2.23 5.41 -26.74 -0.14 -2.38 16
10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16
11 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16
12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16
13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
14 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16
15 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16
16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
19 C -0.01 -0.07 7.28 -7.54 -0.05 -0.13 16
20 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16
21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
22 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16
26 H 0.05 0.45 7.30 -51.93 -0.38 0.07 16
27 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16
28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
29 H 0.09 1.12 7.87 -51.93 -0.41 0.71 16
30 H 0.34 4.52 8.57 -39.29 -0.34 4.18 16
31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
33 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16
37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
39 H 0.07 0.76 7.91 -51.93 -0.41 0.35 16
LS Contribution 316.87 15.07 4.78 4.78
Total: -1.00 -29.87 316.87 -10.08 -39.96
By element:
Atomic # 1 Polarization: 5.82 SS G_CDS: -7.38 Total: -1.56 kcal
Atomic # 6 Polarization: -15.14 SS G_CDS: -0.95 Total: -16.09 kcal
Atomic # 7 Polarization: -42.44 SS G_CDS: -1.51 Total: -43.96 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 4.78 Total: 4.78 kcal
Total: -29.87 -10.08 -39.96 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379157329.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.325 kcal
(2) G-P(sol) polarization free energy of solvation -29.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.370 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds