Wall clock time and date at job start Mon Mar 30 2020 03:14:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1
5 5 C 1.47480 * 111.00171 * 265.97194 * 4 3 2
6 6 C 1.53513 * 87.93170 * 221.29782 * 5 4 3
7 7 N 1.46908 * 114.16911 * 139.66977 * 6 5 4
8 8 C 1.46903 * 110.99670 * 111.15756 * 7 6 5
9 9 C 1.52999 * 109.47087 * 180.02562 * 8 7 6
10 10 C 1.52991 * 109.47485 * 180.02562 * 9 8 7
11 11 C 1.50698 * 109.47296 * 179.97438 * 10 9 8
12 12 H 1.07996 * 119.99923 * 0.02562 * 11 10 9
13 13 C 1.37882 * 119.99911 * 180.02562 * 11 10 9
14 14 N 1.31512 * 119.99990 * 359.97438 * 13 11 10
15 15 Si 1.86793 * 119.99951 * 180.02562 * 13 11 10
16 16 H 1.48500 * 109.47323 * 59.99561 * 15 13 11
17 17 H 1.48502 * 109.47426 * 180.02562 * 15 13 11
18 18 H 1.48504 * 109.46998 * 299.99938 * 15 13 11
19 19 C 1.47482 * 110.99764 * 169.99993 * 4 3 2
20 20 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
21 21 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
23 23 H 1.09001 * 109.46652 * 240.00345 * 2 1 3
24 24 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
25 25 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
26 26 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
27 27 H 1.08999 * 113.47664 * 336.06792 * 5 4 3
28 28 H 1.08994 * 113.47488 * 106.52987 * 5 4 3
29 29 H 1.08997 * 114.34322 * 272.36212 * 6 5 4
30 30 H 1.00896 * 110.99681 * 235.11276 * 7 6 5
31 31 H 1.09003 * 109.47251 * 300.00157 * 8 7 6
32 32 H 1.09002 * 109.46949 * 60.00179 * 8 7 6
33 33 H 1.08999 * 109.46925 * 300.00601 * 9 8 7
34 34 H 1.08998 * 109.47086 * 59.99725 * 9 8 7
35 35 H 1.08999 * 109.47457 * 300.00185 * 10 9 8
36 36 H 1.09002 * 109.46823 * 59.99970 * 10 9 8
37 37 H 0.96998 * 120.00032 * 180.02562 * 14 13 11
38 38 H 1.08994 * 113.48196 * 253.46980 * 19 4 3
39 39 H 1.09003 * 113.47819 * 23.94188 * 19 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 3.5090 1.4425 -0.0006
5 6 4.0381 1.5390 1.3726
6 6 5.0941 2.5164 0.8375
7 7 5.3656 3.6542 1.7262
8 6 6.7135 3.5616 2.3030
9 6 6.9589 4.7607 3.2211
10 6 8.3628 4.6647 3.8213
11 6 8.6047 5.8461 4.7250
12 1 7.8339 6.5908 4.8583
13 6 9.8100 5.9764 5.3818
14 7 10.7484 5.0693 5.2199
15 14 10.1095 7.4404 6.5025
16 1 9.1037 7.4415 7.5950
17 1 11.4728 7.3479 7.0841
18 1 9.9904 8.6962 5.7189
19 6 4.0374 2.7985 -0.2397
20 1 -0.3634 0.5139 -0.8899
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3633 0.5137 0.8900
23 1 1.8933 -0.5138 -0.8900
24 1 1.8934 -0.5138 0.8899
25 1 1.6765 1.9564 -0.8899
26 1 1.6767 1.9563 0.8900
27 1 3.3409 1.9949 2.0756
28 1 4.4594 0.6042 1.7422
29 1 5.9986 2.0387 0.4612
30 1 5.2391 4.5299 1.2413
31 1 6.7999 2.6400 2.8787
32 1 7.4523 3.5600 1.5016
33 1 6.8723 5.6825 2.6457
34 1 6.2200 4.7620 4.0224
35 1 8.4498 3.7430 4.3966
36 1 9.1014 4.6637 3.0197
37 1 11.5962 5.1608 5.6822
38 1 4.4581 2.9311 -1.2364
39 1 3.3400 3.5906 0.0330
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379157329.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:13
Heat of formation + Delta-G solvation = -9.606749 kcal
Electronic energy + Delta-G solvation = -15142.495121 eV
Core-core repulsion = 12698.227997 eV
Total energy + Delta-G solvation = -2444.267125 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.17524 -37.29417 -35.57805 -34.68010 -32.64391 -29.55921 -27.70176 -26.93670
-24.99203 -23.75552 -22.06705 -21.93839 -20.59461 -18.48346 -17.24921 -16.88497
-16.68339 -16.46220 -16.06010 -15.46235 -14.68339 -14.60362 -14.21666 -14.08870
-13.65465 -13.50551 -13.33965 -13.03107 -12.74335 -12.59010 -12.46726 -12.38089
-12.10027 -11.72678 -11.63410 -11.47142 -11.42097 -11.34077 -11.04520 -10.54730
-9.94343 -9.42780 -8.19858 -6.31138 1.40291 1.43641 1.51596 2.41328
2.89399 3.13141 3.31902 3.44049 3.92456 4.02551 4.10545 4.24167
4.26143 4.39162 4.41282 4.54620 4.56231 4.68113 4.71677 4.76909
4.83474 4.85977 4.92754 5.04157 5.12551 5.16758 5.19969 5.25157
5.38253 5.44480 5.52364 5.75468 5.86225 6.05374 6.08345 6.27030
6.44953 6.85969 7.38125 8.91974
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.074740 B = 0.003370 C = 0.003346
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 374.540230 B = 8305.572358 C = 8366.069543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.113 4.113
3 C 0.020 3.980
4 N -0.484 5.484
5 C 0.011 3.989
6 C 0.049 3.951
7 N -0.676 5.676
8 C 0.073 3.927
9 C -0.092 4.092
10 C 0.025 3.975
11 C -0.545 4.545
12 H 0.060 0.940
13 C -0.002 4.002
14 N -0.935 5.935
15 Si 0.966 3.034
16 H -0.267 1.267
17 H -0.283 1.283
18 H -0.266 1.266
19 C 0.004 3.996
20 H 0.060 0.940
21 H 0.062 0.938
22 H 0.054 0.946
23 H 0.063 0.937
24 H 0.052 0.948
25 H 0.079 0.921
26 H 0.046 0.954
27 H 0.075 0.925
28 H 0.076 0.924
29 H 0.079 0.921
30 H 0.348 0.652
31 H 0.059 0.941
32 H 0.026 0.974
33 H 0.052 0.948
34 H 0.052 0.948
35 H -0.010 1.010
36 H -0.009 1.009
37 H 0.264 0.736
38 H 0.092 0.908
39 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.067 -6.547 -11.467 22.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.151 4.151
3 C -0.108 4.108
4 N -0.207 5.207
5 C -0.119 4.119
6 C -0.061 4.061
7 N -0.308 5.308
8 C -0.057 4.057
9 C -0.130 4.130
10 C -0.013 4.013
11 C -0.582 4.582
12 H 0.078 0.922
13 C -0.200 4.200
14 N -0.575 5.575
15 Si 0.790 3.210
16 H -0.192 1.192
17 H -0.208 1.208
18 H -0.191 1.191
19 C -0.126 4.126
20 H 0.079 0.921
21 H 0.081 0.919
22 H 0.073 0.927
23 H 0.082 0.918
24 H 0.071 0.929
25 H 0.097 0.903
26 H 0.064 0.936
27 H 0.093 0.907
28 H 0.094 0.906
29 H 0.097 0.903
30 H 0.168 0.832
31 H 0.078 0.922
32 H 0.044 0.956
33 H 0.071 0.929
34 H 0.071 0.929
35 H 0.009 0.991
36 H 0.009 0.991
37 H 0.072 0.928
38 H 0.110 0.890
39 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -18.061 -7.449 -11.331 22.585
hybrid contribution 0.866 1.327 0.467 1.652
sum -17.195 -6.122 -10.864 21.241
Atomic orbital electron populations
1.21729 0.94499 1.02309 1.02091 1.21371 0.96175 0.95558 1.02000
1.22768 0.88161 0.98299 1.01595 1.68840 1.10174 1.24543 1.17105
1.24017 0.97071 0.99195 0.91570 1.23157 0.96954 0.93158 0.92878
1.60573 1.27741 1.05336 1.37148 1.21880 0.88307 0.98802 0.96677
1.21371 0.97005 0.96695 0.97928 1.18970 0.92579 0.95352 0.94403
1.21688 1.00171 1.08984 1.27407 0.92156 1.26013 0.95917 0.99523
0.98545 1.70092 1.06238 1.36707 1.44458 0.85483 0.77305 0.79248
0.78914 1.19168 1.20817 1.19062 1.24075 0.96543 0.92083 0.99870
0.92112 0.91921 0.92712 0.91807 0.92883 0.90305 0.93562 0.90670
0.90574 0.90336 0.83198 0.92233 0.95617 0.92897 0.92910 0.99139
0.99080 0.92750 0.88979 0.89864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16
2 C -0.11 -1.82 6.26 30.59 0.19 -1.63 16
3 C 0.02 0.36 4.82 86.30 0.42 0.77 16
4 N -0.48 -10.17 6.33 -927.88 -5.88 -16.05 16
5 C 0.01 0.26 7.52 83.58 0.63 0.89 16
6 C 0.05 1.18 4.49 45.37 0.20 1.38 16
7 N -0.68 -18.61 6.59 -490.62 -3.23 -21.85 16
8 C 0.07 2.49 5.53 86.30 0.48 2.97 16
9 C -0.09 -3.82 5.41 30.59 0.17 -3.65 16
10 C 0.02 1.32 4.97 29.84 0.15 1.47 16
11 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16
12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
13 C 0.00 -0.14 5.46 84.66 0.46 0.32 16
14 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16
15 Si 0.97 44.67 29.54 68.60 2.03 46.70 16
16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16
19 C 0.00 0.07 7.28 83.58 0.61 0.68 16
20 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
22 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
25 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16
26 H 0.05 0.82 7.30 -2.39 -0.02 0.80 16
27 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16
28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
29 H 0.08 2.01 7.87 -2.39 -0.02 2.00 16
30 H 0.35 8.62 8.57 -89.70 -0.77 7.85 16
31 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16
32 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16
34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16
35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
37 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16
38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
39 H 0.08 1.49 7.91 -2.39 -0.02 1.47 16
Total: -1.00 -63.37 316.87 -2.33 -65.70
By element:
Atomic # 1 Polarization: 11.98 SS G_CDS: 0.21 Total: 12.19 kcal
Atomic # 6 Polarization: -33.49 SS G_CDS: 4.25 Total: -29.25 kcal
Atomic # 7 Polarization: -86.52 SS G_CDS: -8.82 Total: -95.34 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Total: -63.37 -2.33 -65.70 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379157329.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.097 kcal
(2) G-P(sol) polarization free energy of solvation -63.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.272 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.607 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds