Wall clock time and date at job start Mon Mar 30 2020 03:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.47480 * 111.00171 * 265.97194 * 4 3 2 6 6 C 1.53513 * 87.93170 * 221.29782 * 5 4 3 7 7 N 1.46908 * 114.16911 * 139.66977 * 6 5 4 8 8 C 1.46903 * 110.99670 * 111.15756 * 7 6 5 9 9 C 1.52999 * 109.47087 * 180.02562 * 8 7 6 10 10 C 1.52991 * 109.47485 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47296 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99911 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47323 * 59.99561 * 15 13 11 17 17 H 1.48502 * 109.47426 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46998 * 299.99938 * 15 13 11 19 19 C 1.47482 * 110.99764 * 169.99993 * 4 3 2 20 20 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 21 21 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 23 23 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 24 24 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 25 25 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 26 26 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 27 27 H 1.08999 * 113.47664 * 336.06792 * 5 4 3 28 28 H 1.08994 * 113.47488 * 106.52987 * 5 4 3 29 29 H 1.08997 * 114.34322 * 272.36212 * 6 5 4 30 30 H 1.00896 * 110.99681 * 235.11276 * 7 6 5 31 31 H 1.09003 * 109.47251 * 300.00157 * 8 7 6 32 32 H 1.09002 * 109.46949 * 60.00179 * 8 7 6 33 33 H 1.08999 * 109.46925 * 300.00601 * 9 8 7 34 34 H 1.08998 * 109.47086 * 59.99725 * 9 8 7 35 35 H 1.08999 * 109.47457 * 300.00185 * 10 9 8 36 36 H 1.09002 * 109.46823 * 59.99970 * 10 9 8 37 37 H 0.96998 * 120.00032 * 180.02562 * 14 13 11 38 38 H 1.08994 * 113.48196 * 253.46980 * 19 4 3 39 39 H 1.09003 * 113.47819 * 23.94188 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0381 1.5390 1.3726 6 6 5.0941 2.5164 0.8375 7 7 5.3656 3.6542 1.7262 8 6 6.7135 3.5616 2.3030 9 6 6.9589 4.7607 3.2211 10 6 8.3628 4.6647 3.8213 11 6 8.6047 5.8461 4.7250 12 1 7.8339 6.5908 4.8583 13 6 9.8100 5.9764 5.3818 14 7 10.7484 5.0693 5.2199 15 14 10.1095 7.4404 6.5025 16 1 9.1037 7.4415 7.5950 17 1 11.4728 7.3479 7.0841 18 1 9.9904 8.6962 5.7189 19 6 4.0374 2.7985 -0.2397 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6765 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.3409 1.9949 2.0756 28 1 4.4594 0.6042 1.7422 29 1 5.9986 2.0387 0.4612 30 1 5.2391 4.5299 1.2413 31 1 6.7999 2.6400 2.8787 32 1 7.4523 3.5600 1.5016 33 1 6.8723 5.6825 2.6457 34 1 6.2200 4.7620 4.0224 35 1 8.4498 3.7430 4.3966 36 1 9.1014 4.6637 3.0197 37 1 11.5962 5.1608 5.6822 38 1 4.4581 2.9311 -1.2364 39 1 3.3400 3.5906 0.0330 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379157329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:13 Heat of formation + Delta-G solvation = -9.606749 kcal Electronic energy + Delta-G solvation = -15142.495121 eV Core-core repulsion = 12698.227997 eV Total energy + Delta-G solvation = -2444.267125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17524 -37.29417 -35.57805 -34.68010 -32.64391 -29.55921 -27.70176 -26.93670 -24.99203 -23.75552 -22.06705 -21.93839 -20.59461 -18.48346 -17.24921 -16.88497 -16.68339 -16.46220 -16.06010 -15.46235 -14.68339 -14.60362 -14.21666 -14.08870 -13.65465 -13.50551 -13.33965 -13.03107 -12.74335 -12.59010 -12.46726 -12.38089 -12.10027 -11.72678 -11.63410 -11.47142 -11.42097 -11.34077 -11.04520 -10.54730 -9.94343 -9.42780 -8.19858 -6.31138 1.40291 1.43641 1.51596 2.41328 2.89399 3.13141 3.31902 3.44049 3.92456 4.02551 4.10545 4.24167 4.26143 4.39162 4.41282 4.54620 4.56231 4.68113 4.71677 4.76909 4.83474 4.85977 4.92754 5.04157 5.12551 5.16758 5.19969 5.25157 5.38253 5.44480 5.52364 5.75468 5.86225 6.05374 6.08345 6.27030 6.44953 6.85969 7.38125 8.91974 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.074740 B = 0.003370 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.540230 B = 8305.572358 C = 8366.069543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.020 3.980 4 N -0.484 5.484 5 C 0.011 3.989 6 C 0.049 3.951 7 N -0.676 5.676 8 C 0.073 3.927 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.004 3.996 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.348 0.652 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.052 0.948 35 H -0.010 1.010 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.092 0.908 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.067 -6.547 -11.467 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.108 4.108 4 N -0.207 5.207 5 C -0.119 4.119 6 C -0.061 4.061 7 N -0.308 5.308 8 C -0.057 4.057 9 C -0.130 4.130 10 C -0.013 4.013 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.126 4.126 20 H 0.079 0.921 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.168 0.832 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.061 -7.449 -11.331 22.585 hybrid contribution 0.866 1.327 0.467 1.652 sum -17.195 -6.122 -10.864 21.241 Atomic orbital electron populations 1.21729 0.94499 1.02309 1.02091 1.21371 0.96175 0.95558 1.02000 1.22768 0.88161 0.98299 1.01595 1.68840 1.10174 1.24543 1.17105 1.24017 0.97071 0.99195 0.91570 1.23157 0.96954 0.93158 0.92878 1.60573 1.27741 1.05336 1.37148 1.21880 0.88307 0.98802 0.96677 1.21371 0.97005 0.96695 0.97928 1.18970 0.92579 0.95352 0.94403 1.21688 1.00171 1.08984 1.27407 0.92156 1.26013 0.95917 0.99523 0.98545 1.70092 1.06238 1.36707 1.44458 0.85483 0.77305 0.79248 0.78914 1.19168 1.20817 1.19062 1.24075 0.96543 0.92083 0.99870 0.92112 0.91921 0.92712 0.91807 0.92883 0.90305 0.93562 0.90670 0.90574 0.90336 0.83198 0.92233 0.95617 0.92897 0.92910 0.99139 0.99080 0.92750 0.88979 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.14 16 2 C -0.11 -1.82 6.26 30.59 0.19 -1.63 16 3 C 0.02 0.36 4.82 86.30 0.42 0.77 16 4 N -0.48 -10.17 6.33 -927.88 -5.88 -16.05 16 5 C 0.01 0.26 7.52 83.58 0.63 0.89 16 6 C 0.05 1.18 4.49 45.37 0.20 1.38 16 7 N -0.68 -18.61 6.59 -490.62 -3.23 -21.85 16 8 C 0.07 2.49 5.53 86.30 0.48 2.97 16 9 C -0.09 -3.82 5.41 30.59 0.17 -3.65 16 10 C 0.02 1.32 4.97 29.84 0.15 1.47 16 11 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 14 N -0.93 -57.73 13.29 21.45 0.28 -57.45 16 15 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 C 0.00 0.07 7.28 83.58 0.61 0.68 16 20 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 26 H 0.05 0.82 7.30 -2.39 -0.02 0.80 16 27 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.01 7.87 -2.39 -0.02 2.00 16 30 H 0.35 8.62 8.57 -89.70 -0.77 7.85 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 1.49 7.91 -2.39 -0.02 1.47 16 Total: -1.00 -63.37 316.87 -2.33 -65.70 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.21 Total: 12.19 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 4.25 Total: -29.25 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -8.82 Total: -95.34 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -63.37 -2.33 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379157329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.097 kcal (2) G-P(sol) polarization free energy of solvation -63.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds