Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47097 * 2 1 4 4 H 1.09004 * 109.47002 * 56.06980 * 3 2 1 5 5 C 1.50696 * 109.47367 * 176.06682 * 3 2 1 6 6 H 1.08001 * 120.00113 * 114.59374 * 5 3 2 7 7 C 1.37874 * 120.00059 * 294.60386 * 5 3 2 8 8 N 1.31519 * 120.00025 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 120.00053 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47115 * 90.00498 * 9 7 5 11 11 H 1.48499 * 109.47066 * 210.00155 * 9 7 5 12 12 H 1.48501 * 109.47116 * 330.00274 * 9 7 5 13 13 N 1.46899 * 109.47398 * 296.07070 * 3 2 1 14 14 C 1.46899 * 111.00036 * 283.15484 * 13 3 2 15 15 C 1.46905 * 111.00026 * 159.20138 * 13 3 2 16 16 C 1.52998 * 112.84763 * 166.38344 * 15 13 3 17 17 N 1.46899 * 109.47521 * 65.99182 * 16 15 13 18 18 C 1.53780 * 113.61420 * 297.57571 * 15 13 3 19 19 C 1.53774 * 87.17396 * 139.93774 * 18 15 13 20 20 C 1.53777 * 113.61444 * 35.07009 * 15 13 3 21 21 H 1.08997 * 109.47363 * 65.06260 * 1 2 3 22 22 H 1.09000 * 109.46928 * 185.06221 * 1 2 3 23 23 H 1.09005 * 109.46830 * 305.05815 * 1 2 3 24 24 H 1.09003 * 109.46523 * 240.00314 * 2 1 3 25 25 H 1.08995 * 109.47508 * 120.00416 * 2 1 3 26 26 H 0.97000 * 120.00106 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47161 * 289.02052 * 14 13 3 28 28 H 1.08996 * 109.46878 * 49.01767 * 14 13 3 29 29 H 1.09001 * 109.47005 * 169.01535 * 14 13 3 30 30 H 1.09005 * 109.46821 * 185.99778 * 16 15 13 31 31 H 1.09007 * 109.46863 * 305.99392 * 16 15 13 32 32 H 1.00902 * 110.99806 * 184.59919 * 17 16 15 33 33 H 1.00893 * 110.99944 * 308.56153 * 17 16 15 34 34 H 1.09001 * 113.61275 * 254.53260 * 18 15 13 35 35 H 1.09003 * 113.61478 * 25.34457 * 18 15 13 36 36 H 1.09008 * 113.61148 * 89.15956 * 19 18 15 37 37 H 1.09000 * 113.61906 * 220.05692 * 19 18 15 38 38 H 1.08999 * 113.61676 * 334.57199 * 20 15 13 39 39 H 1.09003 * 113.61212 * 105.38806 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9762 0.8527 5 6 3.5438 1.4437 0.0975 6 1 4.1380 1.8138 -0.7250 7 6 4.1612 0.9720 1.2365 8 7 5.4737 0.9726 1.3213 9 14 3.1336 0.3322 2.6592 10 1 2.8976 -1.1235 2.4841 11 1 3.8552 0.5666 3.9357 12 1 1.8310 1.0448 2.6888 13 7 1.6294 2.1071 -1.2440 14 6 2.4720 1.6832 -2.3702 15 6 1.6498 3.5681 -1.0919 16 6 1.5566 4.3059 -2.4290 17 7 0.2421 4.0565 -3.0354 18 6 0.6677 4.0907 -0.0302 19 6 1.7650 5.0844 0.3858 20 6 2.7808 4.0770 -0.1827 21 1 -0.3634 0.4333 -0.9318 22 1 -0.3633 -1.0237 0.0907 23 1 -0.3633 0.5903 0.8413 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.9080 0.6411 2.1228 27 1 3.4697 2.1075 -2.2574 28 1 2.5393 0.5954 -2.3843 29 1 2.0322 2.0322 -3.3045 30 1 1.6832 5.3758 -2.2631 31 1 2.3391 3.9467 -3.0975 32 1 0.1828 4.4712 -3.9534 33 1 0.0421 3.0683 -3.0713 34 1 -0.2170 4.5681 -0.4513 35 1 0.4271 3.3581 0.7403 36 1 1.7312 6.0265 -0.1616 37 1 1.8428 5.2230 1.4642 38 1 3.1191 3.3412 0.5468 39 1 3.6027 4.5422 -0.7271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385107370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = 34.780328 kcal Electronic energy + Delta-G solvation = -17597.536262 eV Core-core repulsion = 15155.193906 eV Total energy + Delta-G solvation = -2442.342356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75233 -35.51703 -33.51785 -32.17667 -31.42015 -27.43447 -25.77142 -25.36888 -24.17976 -22.68179 -21.17325 -19.76758 -17.12521 -16.87762 -16.04627 -15.38409 -14.78254 -14.35566 -13.93444 -13.63409 -13.23739 -12.65955 -12.60676 -12.42535 -11.93620 -11.90637 -11.50826 -11.32840 -11.13613 -10.95426 -10.85319 -10.51349 -10.03581 -9.95660 -9.82471 -9.70701 -9.51875 -9.33194 -8.99239 -8.55063 -8.29994 -7.06815 -6.14259 -4.10564 3.24412 3.35446 3.36983 4.35339 4.78804 5.00442 5.15325 5.37119 5.39935 5.52738 5.75881 5.97340 5.99071 6.03620 6.08974 6.12990 6.17166 6.27696 6.39862 6.46719 6.59412 6.69291 6.71045 6.75265 6.85026 6.86941 7.01346 7.04070 7.16159 7.26940 7.39947 7.46243 7.66174 7.80709 8.14934 8.23094 8.46836 8.89832 9.47953 10.97389 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.011868 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.853435 B = 2358.648261 C = 2608.867379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.176 3.824 4 H 0.043 0.957 5 C -0.536 4.536 6 H 0.083 0.917 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.262 1.262 13 N -0.514 5.514 14 C 0.037 3.963 15 C 0.096 3.904 16 C 0.088 3.912 17 N -0.844 5.844 18 C -0.114 4.114 19 C -0.151 4.151 20 C -0.171 4.171 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.264 0.736 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.329 0.671 33 H 0.349 0.651 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.140 0.860 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 3.828 -4.852 10.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.069 3.931 4 H 0.061 0.939 5 C -0.574 4.574 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.187 1.187 13 N -0.236 5.236 14 C -0.112 4.112 15 C 0.005 3.995 16 C -0.043 4.043 17 N -0.373 5.373 18 C -0.152 4.152 19 C -0.189 4.189 20 C -0.210 4.210 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.158 0.842 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.788 4.038 -4.235 10.558 hybrid contribution 1.132 -0.707 0.274 1.363 sum -7.656 3.331 -3.962 9.241 Atomic orbital electron populations 1.21716 0.97531 0.98989 1.01636 1.21831 0.93838 0.99358 1.00405 1.19827 0.94356 0.90369 0.88581 0.93920 1.21675 0.90530 1.41842 1.03366 0.89889 1.24961 0.94654 0.95031 0.98269 1.69908 1.08272 1.46507 1.28598 0.86980 0.80908 0.79707 0.81866 1.20389 1.22336 1.18665 1.62294 1.51444 1.04101 1.05799 1.22179 0.95977 1.00666 0.92364 1.22219 0.96492 0.88104 0.92676 1.21565 0.89545 0.99022 0.94154 1.58679 1.31189 1.20684 1.26774 1.22883 0.96683 0.97775 0.97899 1.22843 0.98844 0.97191 0.99975 1.24276 0.95649 0.99457 1.01588 0.92069 0.95052 0.94098 0.92613 0.93637 0.92657 0.94682 0.92070 0.94745 0.91530 0.95506 0.86057 0.83700 0.91469 0.90470 0.91715 0.92419 0.84241 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.73 37.16 0.36 -2.20 16 2 C -0.12 -2.46 5.04 -26.73 -0.13 -2.59 16 3 C 0.18 3.90 0.71 -68.87 -0.05 3.85 16 4 H 0.04 1.01 4.25 -51.93 -0.22 0.79 16 5 C -0.54 -13.76 5.29 -34.44 -0.18 -13.95 16 6 H 0.08 2.33 5.69 -52.49 -0.30 2.03 16 7 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -26.24 13.96 55.43 0.77 -25.47 16 9 Si 0.88 21.22 24.68 -169.99 -4.20 17.03 16 10 H -0.28 -6.65 6.86 56.52 0.39 -6.26 16 11 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.11 6.39 56.52 0.36 -5.75 16 13 N -0.51 -9.94 3.82 -219.68 -0.84 -10.78 16 14 C 0.04 0.69 7.47 60.06 0.45 1.14 16 15 C 0.10 1.74 0.83 -130.79 -0.11 1.63 16 16 C 0.09 1.38 5.41 -3.83 -0.02 1.36 16 17 N -0.84 -11.65 9.36 -10.37 -0.10 -11.75 16 18 C -0.11 -2.03 7.01 -25.92 -0.18 -2.21 16 19 C -0.15 -2.59 7.75 -25.83 -0.20 -2.79 16 20 C -0.17 -3.42 6.12 -25.83 -0.16 -3.58 16 21 H 0.06 1.06 7.87 -51.93 -0.41 0.66 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.17 6.74 -51.93 -0.35 0.82 16 25 H 0.05 1.03 3.99 -51.93 -0.21 0.82 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.74 6.21 -51.93 -0.32 0.42 16 28 H 0.06 1.19 6.63 -51.93 -0.34 0.84 16 29 H 0.03 0.56 6.38 -51.93 -0.33 0.23 16 30 H 0.07 1.01 7.33 -51.93 -0.38 0.63 16 31 H 0.03 0.43 6.47 -51.93 -0.34 0.09 16 32 H 0.33 3.73 9.08 -39.29 -0.36 3.38 16 33 H 0.35 5.02 8.04 -39.30 -0.32 4.70 16 34 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 35 H 0.08 1.47 6.47 -51.93 -0.34 1.14 16 36 H 0.06 1.01 7.63 -51.92 -0.40 0.61 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.14 3.32 4.32 -51.93 -0.22 3.09 16 39 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 278.83 15.07 4.20 4.20 Total: -1.00 -27.02 278.83 -6.60 -33.62 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.12 Total: 10.55 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.32 Total: -17.41 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.16 Total: -47.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.20 Total: 17.03 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.02 -6.60 -33.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385107370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.401 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds