Wall clock time and date at job start Mon Mar 30 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47097 * 2 1 4 4 H 1.09004 * 109.47002 * 56.06980 * 3 2 1 5 5 C 1.50696 * 109.47367 * 176.06682 * 3 2 1 6 6 H 1.08001 * 120.00113 * 114.59374 * 5 3 2 7 7 C 1.37874 * 120.00059 * 294.60386 * 5 3 2 8 8 N 1.31519 * 120.00025 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 120.00053 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47115 * 90.00498 * 9 7 5 11 11 H 1.48499 * 109.47066 * 210.00155 * 9 7 5 12 12 H 1.48501 * 109.47116 * 330.00274 * 9 7 5 13 13 N 1.46899 * 109.47398 * 296.07070 * 3 2 1 14 14 C 1.46899 * 111.00036 * 283.15484 * 13 3 2 15 15 C 1.46905 * 111.00026 * 159.20138 * 13 3 2 16 16 C 1.52998 * 112.84763 * 166.38344 * 15 13 3 17 17 N 1.46899 * 109.47521 * 65.99182 * 16 15 13 18 18 C 1.53780 * 113.61420 * 297.57571 * 15 13 3 19 19 C 1.53774 * 87.17396 * 139.93774 * 18 15 13 20 20 C 1.53777 * 113.61444 * 35.07009 * 15 13 3 21 21 H 1.08997 * 109.47363 * 65.06260 * 1 2 3 22 22 H 1.09000 * 109.46928 * 185.06221 * 1 2 3 23 23 H 1.09005 * 109.46830 * 305.05815 * 1 2 3 24 24 H 1.09003 * 109.46523 * 240.00314 * 2 1 3 25 25 H 1.08995 * 109.47508 * 120.00416 * 2 1 3 26 26 H 0.97000 * 120.00106 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47161 * 289.02052 * 14 13 3 28 28 H 1.08996 * 109.46878 * 49.01767 * 14 13 3 29 29 H 1.09001 * 109.47005 * 169.01535 * 14 13 3 30 30 H 1.09005 * 109.46821 * 185.99778 * 16 15 13 31 31 H 1.09007 * 109.46863 * 305.99392 * 16 15 13 32 32 H 1.00902 * 110.99806 * 184.59919 * 17 16 15 33 33 H 1.00893 * 110.99944 * 308.56153 * 17 16 15 34 34 H 1.09001 * 113.61275 * 254.53260 * 18 15 13 35 35 H 1.09003 * 113.61478 * 25.34457 * 18 15 13 36 36 H 1.09008 * 113.61148 * 89.15956 * 19 18 15 37 37 H 1.09000 * 113.61906 * 220.05692 * 19 18 15 38 38 H 1.08999 * 113.61676 * 334.57199 * 20 15 13 39 39 H 1.09003 * 113.61212 * 105.38806 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9762 0.8527 5 6 3.5438 1.4437 0.0975 6 1 4.1380 1.8138 -0.7250 7 6 4.1612 0.9720 1.2365 8 7 5.4737 0.9726 1.3213 9 14 3.1336 0.3322 2.6592 10 1 2.8976 -1.1235 2.4841 11 1 3.8552 0.5666 3.9357 12 1 1.8310 1.0448 2.6888 13 7 1.6294 2.1071 -1.2440 14 6 2.4720 1.6832 -2.3702 15 6 1.6498 3.5681 -1.0919 16 6 1.5566 4.3059 -2.4290 17 7 0.2421 4.0565 -3.0354 18 6 0.6677 4.0907 -0.0302 19 6 1.7650 5.0844 0.3858 20 6 2.7808 4.0770 -0.1827 21 1 -0.3634 0.4333 -0.9318 22 1 -0.3633 -1.0237 0.0907 23 1 -0.3633 0.5903 0.8413 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.9080 0.6411 2.1228 27 1 3.4697 2.1075 -2.2574 28 1 2.5393 0.5954 -2.3843 29 1 2.0322 2.0322 -3.3045 30 1 1.6832 5.3758 -2.2631 31 1 2.3391 3.9467 -3.0975 32 1 0.1828 4.4712 -3.9534 33 1 0.0421 3.0683 -3.0713 34 1 -0.2170 4.5681 -0.4513 35 1 0.4271 3.3581 0.7403 36 1 1.7312 6.0265 -0.1616 37 1 1.8428 5.2230 1.4642 38 1 3.1191 3.3412 0.5468 39 1 3.6027 4.5422 -0.7271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385107370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:41 Heat of formation + Delta-G solvation = 14.970045 kcal Electronic energy + Delta-G solvation = -17598.395300 eV Core-core repulsion = 15155.193906 eV Total energy + Delta-G solvation = -2443.201395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.29542 -37.17976 -34.85154 -34.12997 -32.96790 -29.23287 -27.29038 -26.84642 -25.73270 -24.35808 -22.64377 -21.49481 -18.85528 -18.66076 -17.63720 -16.68895 -16.60266 -15.76239 -15.38878 -15.34623 -14.88156 -14.42175 -14.12613 -13.81417 -13.66139 -13.59908 -13.03554 -12.90338 -12.71975 -12.59666 -12.46216 -12.14910 -11.78685 -11.60776 -11.46554 -11.32822 -11.27172 -10.94097 -10.75700 -10.57539 -9.43631 -8.75473 -8.26574 -6.23268 1.29610 1.35039 1.43162 2.32572 3.07517 3.27642 3.68762 3.96362 3.97368 4.09396 4.33857 4.42119 4.47488 4.62528 4.65102 4.67835 4.71817 4.81972 4.88903 4.92488 5.06552 5.11705 5.15653 5.27390 5.27808 5.33604 5.40091 5.50109 5.51739 5.58600 5.66028 5.84325 6.26620 6.32927 6.47219 6.65336 6.78136 6.81802 7.37985 8.88662 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027182 B = 0.011868 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.853435 B = 2358.648261 C = 2608.867379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.183 3.817 4 H 0.034 0.966 5 C -0.513 4.513 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.946 5.946 9 Si 0.928 3.072 10 H -0.270 1.270 11 H -0.303 1.303 12 H -0.246 1.246 13 N -0.503 5.503 14 C 0.044 3.956 15 C 0.095 3.905 16 C 0.096 3.904 17 N -0.839 5.839 18 C -0.107 4.107 19 C -0.136 4.136 20 C -0.183 4.183 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.005 0.995 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.022 0.978 32 H 0.346 0.654 33 H 0.348 0.652 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 4.390 -5.600 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.156 4.156 3 C 0.075 3.925 4 H 0.052 0.948 5 C -0.552 4.552 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.230 1.230 12 H -0.170 1.170 13 N -0.225 5.225 14 C -0.105 4.105 15 C 0.004 3.996 16 C -0.035 4.035 17 N -0.370 5.370 18 C -0.145 4.145 19 C -0.174 4.174 20 C -0.223 4.223 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.601 4.610 -5.008 13.450 hybrid contribution 2.033 -0.810 0.407 2.226 sum -9.568 3.800 -4.602 11.276 Atomic orbital electron populations 1.21616 0.94587 1.00553 1.02129 1.21776 0.96445 0.97845 0.99583 1.19669 0.91589 0.91568 0.89716 0.94777 1.21857 0.92476 1.39211 1.01667 0.93273 1.25638 0.95356 0.96031 1.00859 1.70047 1.10071 1.49184 1.29400 0.86132 0.80019 0.79585 0.78737 1.19659 1.23049 1.17005 1.62332 1.50628 1.04946 1.04560 1.22131 0.94660 1.00060 0.93605 1.22408 0.95523 0.87424 0.94253 1.21432 0.90462 0.99062 0.92567 1.58619 1.29572 1.20733 1.28082 1.22790 0.97101 0.97442 0.97140 1.22814 0.96820 0.97455 1.00333 1.24099 0.96605 0.99980 1.01589 0.91162 0.92902 0.94069 0.92879 0.95105 0.92968 0.97650 0.92854 0.91462 0.90546 0.95979 0.84071 0.83814 0.89849 0.91929 0.89256 0.92268 0.88290 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.73 71.98 0.70 -3.65 16 2 C -0.12 -4.84 5.04 30.59 0.15 -4.68 16 3 C 0.18 8.01 0.71 44.17 0.03 8.04 16 4 H 0.03 1.59 4.25 -2.38 -0.01 1.58 16 5 C -0.51 -27.13 5.29 25.60 0.14 -26.99 16 6 H 0.05 2.90 5.69 -2.91 -0.02 2.89 16 7 C 0.02 1.05 5.45 84.65 0.46 1.52 16 8 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 9 Si 0.93 44.28 24.68 68.60 1.69 45.97 16 10 H -0.27 -12.52 6.86 99.48 0.68 -11.84 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 12 H -0.25 -10.99 6.39 99.48 0.64 -10.35 16 13 N -0.50 -18.80 3.82 -848.94 -3.25 -22.04 16 14 C 0.04 1.63 7.47 127.69 0.95 2.58 16 15 C 0.09 3.28 0.83 4.05 0.00 3.29 16 16 C 0.10 2.75 5.41 86.30 0.47 3.21 16 17 N -0.84 -20.05 9.36 -186.71 -1.75 -21.80 16 18 C -0.11 -3.51 7.01 31.12 0.22 -3.30 16 19 C -0.14 -4.43 7.75 31.18 0.24 -4.19 16 20 C -0.18 -7.35 6.12 31.18 0.19 -7.16 16 21 H 0.07 2.19 7.87 -2.39 -0.02 2.17 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 23 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.05 2.17 6.74 -2.39 -0.02 2.15 16 25 H 0.03 1.34 3.99 -2.39 -0.01 1.34 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.00 0.21 6.21 -2.39 -0.01 0.20 16 28 H 0.05 2.04 6.63 -2.39 -0.02 2.03 16 29 H 0.07 2.04 6.38 -2.39 -0.02 2.03 16 30 H 0.08 2.07 7.33 -2.38 -0.02 2.05 16 31 H 0.02 0.66 6.47 -2.38 -0.02 0.64 16 32 H 0.35 6.49 9.08 -89.69 -0.81 5.68 16 33 H 0.35 8.68 8.04 -89.70 -0.72 7.96 16 34 H 0.08 2.50 7.91 -2.39 -0.02 2.48 16 35 H 0.06 2.26 6.47 -2.39 -0.02 2.24 16 36 H 0.09 2.49 7.63 -2.38 -0.02 2.47 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.10 4.84 4.32 -2.39 -0.01 4.83 16 39 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -59.51 278.83 -0.01 -59.52 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.57 Total: 27.21 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 3.56 Total: -31.33 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -4.69 Total: -101.37 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.69 Total: 45.97 kcal Total: -59.51 -0.01 -59.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385107370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.491 kcal (2) G-P(sol) polarization free energy of solvation -59.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds