Wall clock time and date at job start Mon Mar 30 2020 03:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47073 * 2 1 4 4 H 1.08999 * 109.47225 * 305.61822 * 3 2 1 5 5 C 1.50697 * 109.47456 * 185.62056 * 3 2 1 6 6 H 1.08004 * 119.99998 * 245.34210 * 5 3 2 7 7 C 1.37873 * 119.99949 * 65.33518 * 5 3 2 8 8 N 1.31514 * 120.00271 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47021 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46975 * 120.00299 * 9 7 5 12 12 H 1.48495 * 109.47236 * 240.00272 * 9 7 5 13 13 N 1.46904 * 109.47320 * 65.62067 * 3 2 1 14 14 C 1.46895 * 110.99890 * 69.52574 * 13 3 2 15 15 C 1.46899 * 111.00200 * 193.48354 * 13 3 2 16 16 C 1.53000 * 112.84910 * 42.46076 * 15 13 3 17 17 N 1.46906 * 109.47265 * 65.48880 * 16 15 13 18 18 C 1.53788 * 113.61452 * 173.65255 * 15 13 3 19 19 C 1.53787 * 87.07451 * 89.11657 * 18 15 13 20 20 C 1.53784 * 87.17411 * 25.39270 * 19 18 15 21 21 H 1.09004 * 109.46867 * 184.80461 * 1 2 3 22 22 H 1.08997 * 109.47091 * 304.80738 * 1 2 3 23 23 H 1.08993 * 109.47159 * 64.81163 * 1 2 3 24 24 H 1.09002 * 109.47261 * 239.99914 * 2 1 3 25 25 H 1.08998 * 109.47364 * 119.99954 * 2 1 3 26 26 H 0.96998 * 120.00216 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47180 * 193.71970 * 14 13 3 28 28 H 1.08999 * 109.47397 * 313.71740 * 14 13 3 29 29 H 1.08999 * 109.47171 * 73.72282 * 14 13 3 30 30 H 1.08998 * 109.47163 * 185.48588 * 16 15 13 31 31 H 1.08998 * 109.47480 * 305.48939 * 16 15 13 32 32 H 1.00902 * 110.99929 * 56.04524 * 17 16 15 33 33 H 1.00891 * 111.00167 * 179.97438 * 17 16 15 34 34 H 1.08996 * 113.61156 * 334.57472 * 18 15 13 35 35 H 1.08993 * 113.68853 * 203.67298 * 18 15 13 36 36 H 1.09006 * 113.60995 * 139.97881 * 19 18 15 37 37 H 1.09002 * 113.61556 * 270.79816 * 19 18 15 38 38 H 1.08998 * 113.61733 * 89.15478 * 20 19 18 39 39 H 1.09002 * 113.60834 * 220.05857 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 3.5405 1.4448 -0.1391 6 1 4.1573 1.8079 0.6697 7 6 4.1260 0.9833 -1.2989 8 7 3.3750 0.5415 -2.2840 9 14 5.9861 0.9856 -1.4712 10 1 6.5973 1.5278 -0.2311 11 1 6.4644 -0.4028 -1.6922 12 1 6.3752 1.8331 -2.6268 13 7 1.6642 2.0947 1.2615 14 6 2.4199 1.5340 2.3895 15 6 1.8471 3.5498 1.1767 16 6 1.3623 4.1331 -0.1521 17 7 -0.0935 3.9672 -0.2577 18 6 1.3269 4.3089 2.4089 19 6 2.7246 4.1153 3.0203 20 6 3.2572 4.0169 1.5810 21 1 -0.3633 -1.0241 0.0861 22 1 -0.3633 0.5866 0.8438 23 1 -0.3633 0.4373 -0.9299 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7869 0.2172 -3.1001 27 1 1.9615 1.8498 3.3267 28 1 2.4096 0.4458 2.3287 29 1 3.4492 1.8904 2.3503 30 1 1.6113 5.1933 -0.1959 31 1 1.8481 3.6114 -0.9767 32 1 -0.5634 4.3872 0.5304 33 1 -0.4384 4.3452 -1.1272 34 1 0.5386 3.7815 2.9459 35 1 1.0785 5.3511 2.2085 36 1 3.0890 4.9883 3.5619 37 1 2.8285 3.1909 3.5885 38 1 3.5380 4.9790 1.1525 39 1 4.0249 3.2541 1.4507 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385107372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:43 Heat of formation + Delta-G solvation = 43.208957 kcal Electronic energy + Delta-G solvation = -17590.502855 eV Core-core repulsion = 15148.525992 eV Total energy + Delta-G solvation = -2441.976864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86823 -35.16736 -33.39210 -31.96413 -30.48810 -27.28524 -26.37927 -25.10655 -23.57694 -22.64836 -21.35013 -19.15036 -17.75590 -16.24765 -15.79529 -15.25882 -14.69077 -14.07682 -13.76960 -13.51175 -13.14683 -12.66256 -12.39067 -11.88998 -11.79360 -11.52297 -11.28500 -11.16029 -11.04030 -10.77755 -10.57944 -10.51712 -10.17380 -9.96251 -9.77750 -9.43554 -9.26083 -9.17631 -8.61213 -8.24538 -7.97655 -6.92759 -5.91374 -4.02508 3.27845 3.37057 3.39353 4.44535 4.87746 5.16560 5.27466 5.35398 5.42088 5.48343 5.74943 6.03608 6.15837 6.19999 6.21079 6.31089 6.41952 6.51184 6.53648 6.60238 6.68473 6.71536 6.85979 6.90193 6.95494 7.01697 7.29855 7.40437 7.54235 7.74415 7.81246 7.88431 8.04407 8.13102 8.28591 8.47936 8.66766 9.11229 9.64080 11.08684 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.012304 C = 0.010396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.581671 B = 2275.104973 C = 2692.606573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C 0.210 3.790 4 H 0.061 0.939 5 C -0.541 4.541 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.879 3.121 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.497 5.497 14 C 0.024 3.976 15 C 0.123 3.877 16 C 0.077 3.923 17 N -0.830 5.830 18 C -0.135 4.135 19 C -0.156 4.156 20 C -0.173 4.173 21 H 0.018 0.982 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.078 0.922 25 H 0.028 0.972 26 H 0.258 0.742 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.011 0.989 31 H 0.093 0.907 32 H 0.330 0.670 33 H 0.329 0.671 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 6.082 6.091 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.143 4.143 3 C 0.104 3.896 4 H 0.079 0.921 5 C -0.580 4.580 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.707 3.293 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.219 5.219 14 C -0.124 4.124 15 C 0.031 3.969 16 C -0.054 4.054 17 N -0.358 5.358 18 C -0.174 4.174 19 C -0.193 4.193 20 C -0.212 4.212 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.029 0.971 31 H 0.111 0.889 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.818 5.105 6.001 8.755 hybrid contribution 2.077 1.206 -0.376 2.431 sum -1.741 6.311 5.626 8.632 Atomic orbital electron populations 1.21654 0.98520 0.97855 1.01070 1.21522 0.92646 0.99437 1.00680 1.19430 0.92592 0.90977 0.86552 0.92144 1.22029 0.93274 1.41870 1.00872 0.92035 1.24907 0.97171 0.95337 0.96037 1.69937 1.34334 1.42592 1.05493 0.86755 0.87026 0.77601 0.77897 1.20034 1.21166 1.21226 1.62309 1.53819 0.99940 1.05842 1.22562 0.96571 0.99888 0.93424 1.21809 0.92650 0.90254 0.92192 1.21852 0.88436 0.96055 0.99055 1.58486 1.04688 1.66612 1.05972 1.23016 0.96888 0.99040 0.98434 1.23253 0.97253 1.01613 0.97228 1.23756 1.00465 1.01514 0.95470 0.96320 0.92862 0.94127 0.90372 0.95341 0.93173 0.93989 0.92316 0.94693 0.97139 0.88852 0.85845 0.85969 0.91445 0.91496 0.93189 0.88993 0.91622 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.86 37.16 0.37 -2.48 16 2 C -0.10 -2.50 5.28 -26.73 -0.14 -2.64 16 3 C 0.21 5.03 1.17 -68.87 -0.08 4.95 16 4 H 0.06 1.60 5.51 -51.93 -0.29 1.32 16 5 C -0.54 -13.97 7.06 -34.44 -0.24 -14.22 16 6 H 0.06 1.59 4.11 -52.48 -0.22 1.37 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 8 N -0.88 -24.75 11.71 55.43 0.65 -24.10 16 9 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.50 -10.25 4.16 -219.58 -0.91 -11.16 16 14 C 0.02 0.47 7.04 60.06 0.42 0.89 16 15 C 0.12 2.27 0.81 -130.70 -0.11 2.17 16 16 C 0.08 1.41 5.45 -3.82 -0.02 1.39 16 17 N -0.83 -13.57 9.60 -10.37 -0.10 -13.67 16 18 C -0.14 -2.13 6.41 -25.91 -0.17 -2.29 16 19 C -0.16 -2.46 7.30 -25.91 -0.19 -2.65 16 20 C -0.17 -3.15 6.41 -25.83 -0.17 -3.31 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 1.11 7.65 -51.93 -0.40 0.72 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.08 2.09 6.40 -51.93 -0.33 1.76 16 25 H 0.03 0.67 6.27 -51.93 -0.33 0.34 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 28 H 0.06 1.21 6.11 -51.93 -0.32 0.89 16 29 H 0.03 0.71 4.15 -51.93 -0.22 0.49 16 30 H 0.01 0.18 8.08 -51.93 -0.42 -0.24 16 31 H 0.09 2.07 6.06 -51.93 -0.31 1.76 16 32 H 0.33 4.81 8.34 -39.29 -0.33 4.48 16 33 H 0.33 4.74 9.08 -39.30 -0.36 4.39 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.46 4.77 -51.93 -0.25 1.21 16 38 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 39 H 0.09 1.87 4.29 -51.93 -0.22 1.64 16 LS Contribution 282.56 15.07 4.26 4.26 Total: -1.00 -26.99 282.56 -7.52 -34.50 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.97 Total: 10.66 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.42 Total: -16.47 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.36 Total: -48.93 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.99 -7.52 -34.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385107372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.711 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds