Wall clock time and date at job start Mon Mar 30 2020 03:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47073 * 2 1 4 4 H 1.08999 * 109.47225 * 305.61822 * 3 2 1 5 5 C 1.50697 * 109.47456 * 185.62056 * 3 2 1 6 6 H 1.08004 * 119.99998 * 245.34210 * 5 3 2 7 7 C 1.37873 * 119.99949 * 65.33518 * 5 3 2 8 8 N 1.31514 * 120.00271 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47021 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46975 * 120.00299 * 9 7 5 12 12 H 1.48495 * 109.47236 * 240.00272 * 9 7 5 13 13 N 1.46904 * 109.47320 * 65.62067 * 3 2 1 14 14 C 1.46895 * 110.99890 * 69.52574 * 13 3 2 15 15 C 1.46899 * 111.00200 * 193.48354 * 13 3 2 16 16 C 1.53000 * 112.84910 * 42.46076 * 15 13 3 17 17 N 1.46906 * 109.47265 * 65.48880 * 16 15 13 18 18 C 1.53788 * 113.61452 * 173.65255 * 15 13 3 19 19 C 1.53787 * 87.07451 * 89.11657 * 18 15 13 20 20 C 1.53784 * 87.17411 * 25.39270 * 19 18 15 21 21 H 1.09004 * 109.46867 * 184.80461 * 1 2 3 22 22 H 1.08997 * 109.47091 * 304.80738 * 1 2 3 23 23 H 1.08993 * 109.47159 * 64.81163 * 1 2 3 24 24 H 1.09002 * 109.47261 * 239.99914 * 2 1 3 25 25 H 1.08998 * 109.47364 * 119.99954 * 2 1 3 26 26 H 0.96998 * 120.00216 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47180 * 193.71970 * 14 13 3 28 28 H 1.08999 * 109.47397 * 313.71740 * 14 13 3 29 29 H 1.08999 * 109.47171 * 73.72282 * 14 13 3 30 30 H 1.08998 * 109.47163 * 185.48588 * 16 15 13 31 31 H 1.08998 * 109.47480 * 305.48939 * 16 15 13 32 32 H 1.00902 * 110.99929 * 56.04524 * 17 16 15 33 33 H 1.00891 * 111.00167 * 179.97438 * 17 16 15 34 34 H 1.08996 * 113.61156 * 334.57472 * 18 15 13 35 35 H 1.08993 * 113.68853 * 203.67298 * 18 15 13 36 36 H 1.09006 * 113.60995 * 139.97881 * 19 18 15 37 37 H 1.09002 * 113.61556 * 270.79816 * 19 18 15 38 38 H 1.08998 * 113.61733 * 89.15478 * 20 19 18 39 39 H 1.09002 * 113.60834 * 220.05857 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8354 5 6 3.5405 1.4448 -0.1391 6 1 4.1573 1.8079 0.6697 7 6 4.1260 0.9833 -1.2989 8 7 3.3750 0.5415 -2.2840 9 14 5.9861 0.9856 -1.4712 10 1 6.5973 1.5278 -0.2311 11 1 6.4644 -0.4028 -1.6922 12 1 6.3752 1.8331 -2.6268 13 7 1.6642 2.0947 1.2615 14 6 2.4199 1.5340 2.3895 15 6 1.8471 3.5498 1.1767 16 6 1.3623 4.1331 -0.1521 17 7 -0.0935 3.9672 -0.2577 18 6 1.3269 4.3089 2.4089 19 6 2.7246 4.1153 3.0203 20 6 3.2572 4.0169 1.5810 21 1 -0.3633 -1.0241 0.0861 22 1 -0.3633 0.5866 0.8438 23 1 -0.3633 0.4373 -0.9299 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7869 0.2172 -3.1001 27 1 1.9615 1.8498 3.3267 28 1 2.4096 0.4458 2.3287 29 1 3.4492 1.8904 2.3503 30 1 1.6113 5.1933 -0.1959 31 1 1.8481 3.6114 -0.9767 32 1 -0.5634 4.3872 0.5304 33 1 -0.4384 4.3452 -1.1272 34 1 0.5386 3.7815 2.9459 35 1 1.0785 5.3511 2.2085 36 1 3.0890 4.9883 3.5619 37 1 2.8285 3.1909 3.5885 38 1 3.5380 4.9790 1.1525 39 1 4.0249 3.2541 1.4507 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385107372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:43 Heat of formation + Delta-G solvation = 24.578410 kcal Electronic energy + Delta-G solvation = -17591.310736 eV Core-core repulsion = 15148.525992 eV Total energy + Delta-G solvation = -2442.784745 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35038 -36.92362 -34.76987 -33.92969 -32.22524 -28.86154 -28.17483 -26.50295 -25.26567 -24.35477 -22.83430 -20.89134 -19.34864 -18.20095 -17.26552 -16.80491 -16.46896 -15.57562 -15.26212 -15.15889 -14.87519 -14.40029 -13.91033 -13.47818 -13.38256 -13.10723 -12.99503 -12.86676 -12.73377 -12.42588 -12.35802 -12.12147 -12.04784 -11.60646 -11.36613 -11.23294 -10.94064 -10.78165 -10.36520 -10.25491 -9.29111 -8.66332 -7.92452 -6.12277 1.34846 1.39310 1.46834 2.44205 3.25399 3.41466 3.80030 3.90373 4.07982 4.16363 4.37100 4.60133 4.66880 4.70885 4.84782 4.85828 4.88605 4.92170 5.00788 5.04331 5.08727 5.17238 5.32168 5.33000 5.46609 5.48946 5.57948 5.59889 5.72462 5.81151 5.97320 6.17756 6.36658 6.45346 6.59205 6.87072 6.96838 7.15101 7.57631 9.02067 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.012304 C = 0.010396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.581671 B = 2275.104973 C = 2692.606573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.034 0.966 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.933 3.067 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.496 5.496 14 C 0.028 3.972 15 C 0.106 3.894 16 C 0.085 3.915 17 N -0.836 5.836 18 C -0.117 4.117 19 C -0.144 4.144 20 C -0.179 4.179 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.045 0.955 25 H 0.027 0.973 26 H 0.256 0.744 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.025 0.975 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.344 0.656 33 H 0.339 0.661 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 7.324 7.853 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.051 0.949 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.554 5.554 9 Si 0.760 3.240 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.218 5.218 14 C -0.120 4.120 15 C 0.014 3.986 16 C -0.046 4.046 17 N -0.366 5.366 18 C -0.155 4.155 19 C -0.181 4.181 20 C -0.219 4.219 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.317 6.363 7.783 10.941 hybrid contribution 2.219 0.851 -0.917 2.547 sum -2.099 7.214 6.867 10.179 Atomic orbital electron populations 1.21476 0.96283 0.99092 1.00668 1.21413 0.94594 0.99178 0.98919 1.19118 0.91193 0.90799 0.87472 0.94863 1.22326 0.94605 1.40425 1.00429 0.92179 1.25539 1.00555 0.95662 0.96152 1.70060 1.35608 1.43902 1.05864 0.85903 0.83053 0.77281 0.77737 1.19585 1.21273 1.21244 1.62266 1.53717 1.01300 1.04489 1.22566 0.96287 0.98960 0.94187 1.22045 0.93623 0.89155 0.93740 1.21630 0.89313 0.96316 0.97366 1.58378 1.03710 1.67294 1.07236 1.22929 0.96868 0.99723 0.96011 1.23172 0.96749 1.02587 0.95630 1.23755 0.99305 1.00877 0.97918 0.94410 0.92230 0.95195 0.93667 0.95446 0.93481 0.91127 0.93759 0.95633 0.95385 0.93480 0.84293 0.84831 0.91027 0.89265 0.90850 0.89181 0.90851 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.86 71.98 0.71 -4.23 16 2 C -0.10 -4.97 5.28 30.59 0.16 -4.81 16 3 C 0.22 10.72 1.17 44.17 0.05 10.77 16 4 H 0.03 1.83 5.51 -2.39 -0.01 1.81 16 5 C -0.54 -28.29 7.06 25.60 0.18 -28.11 16 6 H 0.06 3.14 4.11 -2.91 -0.01 3.13 16 7 C 0.02 1.09 5.30 84.65 0.45 1.53 16 8 N -0.91 -52.70 11.71 21.45 0.25 -52.45 16 9 Si 0.93 43.91 29.54 68.60 2.03 45.93 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.50 -20.00 4.16 -848.61 -3.53 -23.53 16 14 C 0.03 1.07 7.04 127.69 0.90 1.96 16 15 C 0.11 3.75 0.81 4.11 0.00 3.75 16 16 C 0.08 3.05 5.45 86.30 0.47 3.52 16 17 N -0.84 -26.16 9.60 -186.71 -1.79 -27.95 16 18 C -0.12 -3.24 6.41 31.12 0.20 -3.04 16 19 C -0.14 -4.04 7.30 31.12 0.23 -3.82 16 20 C -0.18 -6.25 6.41 31.18 0.20 -6.05 16 21 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 2.40 7.65 -2.39 -0.02 2.38 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.04 2.48 6.40 -2.39 -0.02 2.47 16 25 H 0.03 1.30 6.27 -2.39 -0.01 1.28 16 26 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.07 2.27 6.29 -2.39 -0.02 2.25 16 28 H 0.04 1.78 6.11 -2.39 -0.01 1.77 16 29 H 0.03 1.02 4.15 -2.39 -0.01 1.01 16 30 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 31 H 0.05 2.14 6.06 -2.39 -0.01 2.13 16 32 H 0.34 9.11 8.34 -89.69 -0.75 8.36 16 33 H 0.34 9.41 9.08 -89.70 -0.81 8.59 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 2.11 8.10 -2.39 -0.02 2.09 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.09 2.56 4.77 -2.39 -0.01 2.55 16 38 H 0.07 2.41 8.06 -2.39 -0.02 2.39 16 39 H 0.06 2.42 4.29 -2.39 -0.01 2.41 16 Total: -1.00 -58.40 282.56 0.00 -58.40 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.50 Total: 28.11 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 3.55 Total: -28.51 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -5.08 Total: -103.93 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -58.40 0.00 -58.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385107372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.976 kcal (2) G-P(sol) polarization free energy of solvation -58.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds