Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46684 * 2 1 4 4 H 1.09002 * 109.47155 * 304.17056 * 3 2 1 5 5 C 1.50703 * 109.46624 * 184.17480 * 3 2 1 6 6 H 1.08001 * 119.99929 * 240.00059 * 5 3 2 7 7 C 1.37872 * 120.00259 * 60.00171 * 5 3 2 8 8 N 1.31516 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99873 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47174 * 90.00111 * 9 7 5 11 11 H 1.48507 * 109.46908 * 209.99558 * 9 7 5 12 12 H 1.48497 * 109.47223 * 329.99797 * 9 7 5 13 13 N 1.46897 * 109.47296 * 64.17510 * 3 2 1 14 14 C 1.46899 * 110.99911 * 207.23206 * 13 3 2 15 15 H 1.08996 * 110.62764 * 35.98156 * 14 13 3 16 16 C 1.54316 * 110.70377 * 272.87266 * 14 13 3 17 17 N 1.47443 * 107.23578 * 219.33399 * 16 14 13 18 18 C 1.46894 * 111.00142 * 236.74630 * 17 16 14 19 19 C 1.47844 * 108.56435 * 359.01382 * 17 16 14 20 20 C 1.54903 * 104.79889 * 24.09275 * 19 17 16 21 21 H 1.09003 * 110.98884 * 81.01807 * 20 19 17 22 22 C 1.52991 * 110.99496 * 204.83713 * 20 19 17 23 23 H 1.08999 * 109.46980 * 174.87705 * 1 2 3 24 24 H 1.09002 * 109.46979 * 294.87377 * 1 2 3 25 25 H 1.08998 * 109.47404 * 54.87721 * 1 2 3 26 26 H 1.09005 * 109.47023 * 240.00065 * 2 1 3 27 27 H 1.08993 * 109.47343 * 120.00223 * 2 1 3 28 28 H 0.97000 * 119.99863 * 179.97438 * 8 7 5 29 29 H 1.00906 * 110.99982 * 83.27295 * 13 3 2 30 30 H 1.09006 * 109.89326 * 338.74311 * 16 14 13 31 31 H 1.09007 * 109.88839 * 99.93010 * 16 14 13 32 32 H 1.09001 * 109.47687 * 59.99976 * 18 17 16 33 33 H 1.09002 * 109.47254 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47466 * 299.99720 * 18 17 16 35 35 H 1.09000 * 110.37287 * 142.92348 * 19 17 16 36 36 H 1.09002 * 110.37474 * 265.15324 * 19 17 16 37 37 H 1.09001 * 109.47788 * 172.26727 * 22 20 19 38 38 H 1.09001 * 109.47332 * 292.27129 * 22 20 19 39 39 H 1.09003 * 109.47078 * 52.27033 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6168 1.9775 -0.8503 5 6 3.5434 1.4438 -0.1034 6 1 4.1381 1.8921 0.6787 7 6 4.1597 0.8726 -1.1965 8 7 3.4355 0.3263 -2.1488 9 14 6.0233 0.8749 -1.3250 10 1 6.5647 -0.3535 -0.6901 11 1 6.4208 0.9091 -2.7555 12 1 6.5659 2.0708 -0.6317 13 7 1.6343 2.1053 1.2466 14 6 1.5064 3.5560 1.0541 15 1 1.1136 3.7785 0.0620 16 6 2.8634 4.2572 1.2736 17 7 2.5934 5.5167 1.9910 18 6 3.1125 6.6699 1.2437 19 6 1.1348 5.6350 2.2017 20 6 0.6090 4.1786 2.1559 21 1 0.7613 3.6783 3.1123 22 6 -0.8651 4.1406 1.7484 23 1 -0.3633 -1.0236 -0.0918 24 1 -0.3633 0.4323 0.9324 25 1 -0.3634 0.5912 -0.8405 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8692 -0.0752 -2.9180 29 1 2.2786 1.8951 1.9942 30 1 3.5165 3.6221 1.8723 31 1 3.3303 4.4709 0.3120 32 1 2.6331 6.7150 0.2658 33 1 2.9003 7.5858 1.7953 34 1 4.1899 6.5648 1.1157 35 1 0.9269 6.0831 3.1733 36 1 0.6834 6.2283 1.4065 37 1 -1.1720 3.1066 1.5906 38 1 -1.4720 4.5831 2.5384 39 1 -1.0018 4.7049 0.8260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389252699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = -8.336210 kcal Electronic energy + Delta-G solvation = -16774.167271 eV Core-core repulsion = 14329.955242 eV Total energy + Delta-G solvation = -2444.212030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.98279 -35.68362 -33.10682 -31.85605 -30.86993 -27.77167 -26.66116 -25.88252 -23.55283 -22.45411 -20.46287 -19.97201 -19.23153 -16.58437 -15.61659 -15.15807 -14.71592 -14.00231 -13.66148 -13.62992 -13.18711 -12.82438 -12.69466 -12.38564 -11.90691 -11.77401 -11.51212 -11.31256 -11.21776 -11.09871 -10.83066 -10.72750 -10.60411 -10.44413 -10.23776 -10.11741 -9.57720 -9.37943 -9.00050 -8.38247 -8.03523 -7.22494 -6.00050 -4.12592 3.26106 3.33548 3.36220 4.35327 4.38871 5.00129 5.06238 5.25602 5.31706 5.50676 5.64064 5.68421 5.78783 5.84941 5.91772 6.02068 6.03859 6.14089 6.24951 6.40193 6.43088 6.49814 6.54810 6.61538 6.71949 6.81083 7.13352 7.17585 7.28640 7.38805 7.44890 7.60145 7.78085 8.09758 8.14726 8.33933 8.66134 9.00441 9.55121 11.00092 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022532 B = 0.009934 C = 0.007275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.405537 B = 2817.855464 C = 3848.071205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.029 0.971 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.089 3.911 15 H 0.073 0.927 16 C 0.022 3.978 17 N -0.539 5.539 18 C 0.022 3.978 19 C 0.044 3.956 20 C -0.094 4.094 21 H 0.082 0.918 22 C -0.132 4.132 23 H 0.023 0.977 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.331 0.669 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 7.763 5.707 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.024 4.024 15 H 0.091 0.909 16 C -0.107 4.107 17 N -0.263 5.263 18 C -0.127 4.127 19 C -0.084 4.084 20 C -0.113 4.113 21 H 0.100 0.900 22 C -0.190 4.190 23 H 0.043 0.957 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.012 7.529 5.887 10.792 hybrid contribution 1.781 0.309 -1.119 2.126 sum -3.231 7.837 4.768 9.726 Atomic orbital electron populations 1.21686 0.99064 0.98217 1.00310 1.21501 0.92026 0.99303 1.01669 1.19196 0.92782 0.91134 0.86113 0.95286 1.21899 0.92600 1.37789 1.05807 0.92614 1.24928 0.97801 0.95061 0.95736 1.69879 1.34817 1.38101 1.09589 0.86696 0.86311 0.78445 0.77151 1.20652 1.21308 1.20047 1.60870 1.54185 1.05340 1.10033 1.22661 0.92644 0.89793 0.97288 0.90888 1.23670 0.99299 0.90486 0.97263 1.63557 1.13291 1.02664 1.46768 1.22489 1.00452 0.93834 0.95881 1.23105 0.87674 0.97228 1.00374 1.22293 0.94987 0.94052 0.99999 0.89985 1.21609 0.95009 1.02368 1.00021 0.95741 0.93452 0.94578 0.89243 0.95072 0.92943 0.85159 0.90400 0.92555 0.95745 0.92098 0.91691 0.91056 0.94080 0.91598 0.93513 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.73 37.16 0.36 -2.40 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.22 5.17 1.99 -68.86 -0.14 5.03 16 4 H 0.03 0.78 7.43 -51.93 -0.39 0.40 16 5 C -0.54 -14.12 7.89 -34.44 -0.27 -14.39 16 6 H 0.06 1.44 6.74 -52.49 -0.35 1.09 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.89 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.69 5.65 -99.05 -0.56 -14.25 16 14 C 0.09 1.63 2.70 -65.89 -0.18 1.45 16 15 H 0.07 1.46 7.40 -51.93 -0.38 1.08 16 16 C 0.02 0.40 5.62 -2.84 -0.02 0.39 16 17 N -0.54 -8.63 5.44 -239.52 -1.30 -9.94 16 18 C 0.02 0.31 9.12 60.06 0.55 0.86 16 19 C 0.04 0.63 6.19 -2.30 -0.01 0.62 16 20 C -0.09 -1.43 3.32 -88.49 -0.29 -1.72 16 21 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 22 C -0.13 -1.81 9.31 37.15 0.35 -1.46 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.09 2.37 5.97 -51.93 -0.31 2.06 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.33 6.77 7.77 -39.29 -0.31 6.46 16 30 H 0.08 1.54 6.91 -51.93 -0.36 1.18 16 31 H 0.06 1.12 7.58 -51.92 -0.39 0.73 16 32 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.56 7.63 -51.93 -0.40 0.17 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -26.48 302.94 -8.67 -35.15 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.08 Total: 5.18 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 0.10 Total: -12.58 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -1.24 Total: -48.29 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.48 -8.67 -35.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389252699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.814 kcal (2) G-P(sol) polarization free energy of solvation -26.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds