Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47183 * 2 1 4 4 H 1.08994 * 109.47553 * 304.43168 * 3 2 1 5 5 C 1.50704 * 109.46973 * 184.42765 * 3 2 1 6 6 H 1.08002 * 120.00455 * 239.99992 * 5 3 2 7 7 C 1.37883 * 119.99587 * 60.00309 * 5 3 2 8 8 N 1.31512 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99835 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47028 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47120 * 119.99793 * 9 7 5 12 12 H 1.48502 * 109.47413 * 239.99979 * 9 7 5 13 13 N 1.46900 * 109.47304 * 64.43194 * 3 2 1 14 14 C 1.46897 * 111.00403 * 206.93681 * 13 3 2 15 15 H 1.09001 * 110.36572 * 30.91571 * 14 13 3 16 16 C 1.54382 * 110.32577 * 268.73861 * 14 13 3 17 17 N 1.48665 * 104.67350 * 217.32978 * 16 14 13 18 18 C 1.46896 * 111.11041 * 158.89516 * 17 16 14 19 19 C 1.48568 * 104.16767 * 39.31604 * 17 16 14 20 20 C 1.54250 * 110.32746 * 153.09698 * 14 13 3 21 21 H 1.09001 * 110.32810 * 237.79654 * 20 14 13 22 22 C 1.53005 * 110.41052 * 359.96037 * 20 14 13 23 23 H 1.08993 * 109.47315 * 294.71169 * 1 2 3 24 24 H 1.09006 * 109.46979 * 54.71326 * 1 2 3 25 25 H 1.09001 * 109.47064 * 174.70785 * 1 2 3 26 26 H 1.08995 * 109.47272 * 239.99629 * 2 1 3 27 27 H 1.09000 * 109.46542 * 120.00246 * 2 1 3 28 28 H 0.97003 * 120.00068 * 180.02562 * 8 7 5 29 29 H 1.00905 * 110.99966 * 82.98353 * 13 3 2 30 30 H 1.09004 * 110.40844 * 336.02265 * 16 14 13 31 31 H 1.08998 * 110.41630 * 98.34526 * 16 14 13 32 32 H 1.08999 * 109.47739 * 304.45737 * 18 17 16 33 33 H 1.08999 * 109.46849 * 64.45934 * 18 17 16 34 34 H 1.09004 * 109.47303 * 184.45097 * 18 17 16 35 35 H 1.08993 * 110.41111 * 201.83463 * 19 17 16 36 36 H 1.09002 * 110.40518 * 79.51303 * 19 17 16 37 37 H 1.09000 * 109.47641 * 177.14517 * 22 20 14 38 38 H 1.09001 * 109.46741 * 297.13746 * 22 20 14 39 39 H 1.08994 * 109.47193 * 57.13816 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6133 1.9787 -0.8475 5 6 3.5430 1.4438 -0.1097 6 1 4.1411 1.8909 0.6706 7 6 4.1547 0.8742 -1.2063 8 7 3.4264 0.3302 -2.1568 9 14 6.0177 0.8765 -1.3427 10 1 6.6004 1.5454 -0.1517 11 1 6.5105 -0.5225 -1.4146 12 1 6.4234 1.6079 -2.5698 13 7 1.6397 2.1034 1.2493 14 6 1.5179 3.5552 1.0614 15 1 1.2094 3.7810 0.0406 16 6 2.8576 4.2518 1.3831 17 7 2.4705 5.5230 2.0496 18 6 3.5789 6.0594 2.8505 19 6 1.3229 5.1454 2.9143 20 6 0.5084 4.1431 2.0686 21 1 -0.2957 4.6574 1.5424 22 6 -0.0624 3.0375 2.9590 23 1 -0.3633 0.4296 0.9335 24 1 -0.3633 0.5937 -0.8389 25 1 -0.3633 -1.0233 -0.0948 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.8568 -0.0708 -2.9281 29 1 2.2846 1.8882 1.9950 30 1 3.4532 3.6370 2.0579 31 1 3.4109 4.4538 0.4660 32 1 3.9101 5.3049 3.5640 33 1 4.4065 6.3257 2.1930 34 1 3.2428 6.9457 3.3886 35 1 0.7198 6.0222 3.1499 36 1 1.6767 4.6712 3.8297 37 1 -0.7344 3.4757 3.6969 38 1 -0.6126 2.3244 2.3450 39 1 0.7528 2.5246 3.4692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389252701.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = -19.389110 kcal Electronic energy + Delta-G solvation = -16853.717308 eV Core-core repulsion = 14409.025988 eV Total energy + Delta-G solvation = -2444.691319 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39817 -37.39895 -34.72116 -33.52525 -32.29945 -29.37057 -28.18288 -27.17751 -25.02670 -24.35477 -22.19983 -21.44651 -20.26517 -18.58288 -17.24140 -16.63120 -16.40980 -15.52029 -15.37658 -14.91909 -14.77351 -14.43643 -14.12719 -13.66051 -13.38326 -13.18783 -13.12295 -12.99930 -12.84110 -12.58382 -12.37197 -12.29846 -12.03220 -11.86181 -11.76294 -11.46421 -11.32995 -11.07288 -10.88870 -10.43884 -9.49585 -8.97558 -8.03260 -6.24162 1.35068 1.38593 1.47060 2.39777 3.10443 3.16738 3.69814 3.77697 3.98985 4.21126 4.33579 4.49307 4.55975 4.61822 4.66456 4.74998 4.79170 4.84166 4.91706 4.95225 4.96499 5.03252 5.14228 5.23312 5.32288 5.42397 5.50249 5.56667 5.65893 5.70230 5.77669 5.88887 6.10791 6.15989 6.23331 6.43973 6.85152 7.04711 7.46891 8.93169 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022769 B = 0.010058 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.471305 B = 2783.050951 C = 3813.013946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.223 3.777 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.659 5.659 14 C 0.096 3.904 15 H 0.050 0.950 16 C 0.027 3.973 17 N -0.530 5.530 18 C 0.015 3.985 19 C 0.041 3.959 20 C -0.085 4.085 21 H 0.076 0.924 22 C -0.109 4.109 23 H 0.060 0.940 24 H 0.028 0.972 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 7.137 10.050 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.287 5.287 14 C -0.016 4.016 15 H 0.069 0.931 16 C -0.103 4.103 17 N -0.254 5.254 18 C -0.133 4.133 19 C -0.087 4.087 20 C -0.104 4.104 21 H 0.094 0.906 22 C -0.167 4.167 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.611 7.345 9.399 12.789 hybrid contribution 2.562 -0.537 -0.216 2.627 sum -2.049 6.808 9.182 11.613 Atomic orbital electron populations 1.21551 0.96427 0.99359 1.00702 1.21345 0.94357 0.98433 0.99898 1.18990 0.91534 0.91434 0.86669 0.98578 1.22186 0.93923 1.37085 1.05416 0.93070 1.25618 1.01570 0.95105 0.95723 1.70013 1.36111 1.39016 1.09943 0.85729 0.81828 0.77610 0.77758 1.19546 1.20734 1.21100 1.61009 1.53210 1.06469 1.07983 1.22166 0.93277 0.88095 0.98089 0.93117 1.23665 0.98134 0.90428 0.98055 1.65330 1.07612 1.25224 1.27266 1.22526 0.94004 1.00142 0.96678 1.23245 0.92435 0.98625 0.94409 1.21937 0.96797 0.95829 0.95870 0.90555 1.21387 1.00063 0.97107 0.98162 0.92052 0.95329 0.93978 0.92362 0.95321 0.93078 0.85452 0.94709 0.92787 0.95503 0.91837 0.89478 0.88852 0.93412 0.92252 0.92800 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.73 71.98 0.70 -4.20 16 2 C -0.10 -4.81 5.45 30.59 0.17 -4.65 16 3 C 0.22 10.84 1.99 44.17 0.09 10.93 16 4 H 0.00 -0.21 7.38 -2.39 -0.02 -0.23 16 5 C -0.55 -28.94 8.02 25.60 0.21 -28.73 16 6 H 0.05 2.68 7.11 -2.91 -0.02 2.66 16 7 C 0.02 1.07 5.29 84.66 0.45 1.51 16 8 N -0.91 -52.07 11.30 21.45 0.24 -51.83 16 9 Si 0.94 43.50 29.54 68.60 2.03 45.53 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.66 -26.17 3.84 -468.76 -1.80 -27.97 16 14 C 0.10 3.52 3.36 45.81 0.15 3.68 16 15 H 0.05 2.14 7.39 -2.39 -0.02 2.12 16 16 C 0.03 0.98 5.24 86.43 0.45 1.43 16 17 N -0.53 -15.96 5.66 -907.32 -5.14 -21.09 16 18 C 0.02 0.38 9.53 127.69 1.22 1.59 16 19 C 0.04 1.04 6.03 86.45 0.52 1.56 16 20 C -0.08 -2.44 3.65 -9.90 -0.04 -2.48 16 21 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 22 C -0.11 -2.88 8.11 71.98 0.58 -2.30 16 23 H 0.06 2.25 7.79 -2.39 -0.02 2.23 16 24 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 3.14 5.96 -2.39 -0.01 3.13 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.26 14.21 8.31 -92.71 -0.77 13.43 16 29 H 0.33 13.07 7.34 -89.69 -0.66 12.41 16 30 H 0.03 1.30 7.09 -2.38 -0.02 1.28 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.03 0.65 7.98 -2.39 -0.02 0.63 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.57 7.87 -2.39 -0.02 1.55 16 39 H 0.05 1.27 7.47 -2.39 -0.02 1.26 16 Total: -1.00 -56.65 300.72 0.17 -56.48 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.34 Total: 20.52 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.50 Total: -21.64 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -6.70 Total: -100.89 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -56.65 0.17 -56.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389252701.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.096 kcal (2) G-P(sol) polarization free energy of solvation -56.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds