Wall clock time and date at job start Mon Mar 30 2020 03:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 H 1.09004 * 109.47569 * 175.24731 * 3 2 1 5 5 C 1.50697 * 109.47164 * 55.24488 * 3 2 1 6 6 H 1.08004 * 120.00550 * 245.72713 * 5 3 2 7 7 C 1.37875 * 119.99886 * 65.72789 * 5 3 2 8 8 N 1.31515 * 120.00199 * 5.50446 * 7 5 3 9 9 Si 1.86800 * 120.00236 * 185.50950 * 7 5 3 10 10 H 1.48494 * 109.47212 * 269.99776 * 9 7 5 11 11 H 1.48499 * 109.47181 * 29.99753 * 9 7 5 12 12 H 1.48500 * 109.47408 * 149.99801 * 9 7 5 13 13 N 1.46902 * 109.47018 * 295.24841 * 3 2 1 14 14 C 1.48529 * 110.99951 * 302.24051 * 13 3 2 15 15 C 1.54941 * 103.22937 * 200.27738 * 14 13 3 16 16 C 1.54600 * 102.91795 * 37.41700 * 15 14 13 17 17 C 1.52998 * 110.39390 * 97.00230 * 16 15 14 18 18 C 1.53005 * 110.30696 * 219.12693 * 16 15 14 19 19 N 1.46900 * 109.47096 * 295.71337 * 18 16 15 20 20 C 1.47905 * 110.99992 * 184.84759 * 13 3 2 21 21 H 1.08995 * 109.47678 * 64.94775 * 1 2 3 22 22 H 1.08999 * 109.47108 * 184.95170 * 1 2 3 23 23 H 1.09007 * 109.46777 * 304.94972 * 1 2 3 24 24 H 1.09006 * 109.46989 * 240.00157 * 2 1 3 25 25 H 1.08998 * 109.47700 * 120.00213 * 2 1 3 26 26 H 0.96999 * 119.99730 * 355.16163 * 8 7 5 27 27 H 1.08998 * 110.67144 * 318.71348 * 14 13 3 28 28 H 1.09004 * 110.66869 * 81.84946 * 14 13 3 29 29 H 1.08996 * 110.72446 * 279.05822 * 15 14 13 30 30 H 1.08998 * 110.87722 * 155.84214 * 15 14 13 31 31 H 1.08997 * 109.46969 * 304.23205 * 17 16 15 32 32 H 1.08998 * 109.46948 * 64.23388 * 17 16 15 33 33 H 1.09004 * 109.47243 * 184.23539 * 17 16 15 34 34 H 1.08996 * 109.47089 * 55.71718 * 18 16 15 35 35 H 1.08998 * 109.47043 * 175.71706 * 18 16 15 36 36 H 1.00906 * 111.00018 * 56.04635 * 19 18 16 37 37 H 1.00899 * 110.99954 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.91429 * 265.19346 * 20 13 3 39 39 H 1.08997 * 109.91585 * 26.48812 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4437 0.0851 5 6 1.4439 2.1861 1.1673 6 1 0.7595 3.0035 0.9943 7 6 1.7721 1.8229 2.4562 8 7 2.6862 0.9012 2.6672 9 14 0.9183 2.6398 3.9030 10 1 1.6828 3.8451 4.3127 11 1 -0.4566 3.0369 3.5066 12 1 0.8499 1.6869 5.0399 13 7 1.6463 2.1010 -1.2527 14 6 2.1721 1.3635 -2.4299 15 6 2.1352 2.4245 -3.5584 16 6 2.5356 3.7246 -2.8238 17 6 4.0287 4.0030 -3.0085 18 6 1.7085 4.9032 -3.3413 19 7 2.0231 5.1381 -4.7569 20 6 2.2206 3.4613 -1.3397 21 1 -0.3634 0.4351 -0.9309 22 1 -0.3633 -1.0238 0.0887 23 1 -0.3633 0.5888 0.8424 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.0790 0.4272 1.9176 27 1 3.1937 1.0291 -2.2495 28 1 1.5273 0.5194 -2.6744 29 1 1.1314 2.5101 -3.9746 30 1 2.8562 2.1854 -4.3401 31 1 4.6035 3.1409 -2.6702 32 1 4.2362 4.1873 -4.0625 33 1 4.3099 4.8792 -2.4242 34 1 0.6476 4.6758 -3.2377 35 1 1.9469 5.7959 -2.7632 36 1 1.8716 4.3040 -5.3042 37 1 1.4888 5.9120 -5.1224 38 1 1.4982 4.1931 -0.9779 39 1 3.1358 3.5162 -0.7503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389259386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:40 Heat of formation + Delta-G solvation = -12.436035 kcal Electronic energy + Delta-G solvation = -16945.507571 eV Core-core repulsion = 14501.117760 eV Total energy + Delta-G solvation = -2444.389812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21102 -35.94232 -33.53533 -31.42522 -30.16609 -29.14445 -26.26980 -25.29259 -24.08756 -22.85744 -21.34723 -19.20753 -18.34375 -16.69616 -15.93025 -15.23854 -14.91598 -14.12528 -13.70075 -13.59168 -13.47119 -13.12100 -12.63519 -12.41741 -12.12175 -11.74369 -11.66593 -11.33167 -11.16359 -10.84738 -10.75146 -10.36273 -10.27606 -10.20297 -10.09209 -10.02422 -9.81079 -9.57575 -8.62817 -8.44915 -8.32037 -7.29680 -6.28943 -3.99605 3.44417 3.48689 3.64089 4.53559 4.60594 4.88894 4.98187 5.06745 5.37828 5.43577 5.55100 5.73992 5.78990 5.88648 5.96378 6.05162 6.21621 6.29136 6.30195 6.34350 6.35461 6.46418 6.50895 6.56874 6.69942 6.76540 6.90584 7.05150 7.15281 7.21938 7.31916 7.44526 7.53801 7.84551 8.06929 8.37191 8.64108 8.92961 9.69879 11.06967 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.008212 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.688072 B = 3408.941626 C = 3786.558672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C 0.196 3.804 4 H -0.010 1.010 5 C -0.573 4.573 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.501 5.501 14 C 0.034 3.966 15 C -0.112 4.112 16 C -0.074 4.074 17 C -0.125 4.125 18 C 0.078 3.922 19 N -0.849 5.849 20 C 0.064 3.936 21 H 0.043 0.957 22 H 0.018 0.982 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.061 0.939 26 H 0.270 0.730 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.337 0.663 37 H 0.335 0.665 38 H 0.068 0.932 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 4.283 -11.720 12.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.153 4.153 3 C 0.089 3.911 4 H 0.007 0.993 5 C -0.612 4.612 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.225 5.225 14 C -0.094 4.094 15 C -0.150 4.150 16 C -0.075 4.075 17 C -0.183 4.183 18 C -0.053 4.053 19 N -0.378 5.378 20 C -0.065 4.065 21 H 0.062 0.938 22 H 0.037 0.963 23 H 0.085 0.915 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.346 4.514 -9.769 10.845 hybrid contribution -0.063 -0.400 -1.721 1.768 sum -1.409 4.114 -11.491 12.286 Atomic orbital electron populations 1.21465 0.96253 0.97964 1.02109 1.21629 0.96601 0.98269 0.98817 1.19597 0.93020 0.91233 0.87229 0.99251 1.21808 1.29915 1.18377 0.91098 0.92742 1.25698 0.95703 0.97051 1.00060 1.70770 1.24597 1.24410 1.35623 0.83563 0.75610 0.75687 0.75494 1.21671 1.21420 1.21116 1.64784 1.54378 1.00986 1.02350 1.23132 0.97671 0.96750 0.91890 1.22555 1.00476 0.94734 0.97251 1.21518 0.95668 0.94206 0.96101 1.21724 0.94164 1.00572 1.01812 1.21825 0.96738 0.98007 0.88717 1.58768 1.64741 1.10603 1.03722 1.22664 0.98428 0.92962 0.92401 0.93816 0.96288 0.91523 0.95880 0.92055 0.91856 0.95034 0.91169 0.91851 0.91872 0.93631 0.91870 0.93117 0.95142 0.91279 0.85022 0.85300 0.91322 0.93822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.53 37.15 0.35 -2.31 16 2 C -0.11 -2.69 5.18 -26.73 -0.14 -2.83 16 3 C 0.20 4.88 1.10 -68.87 -0.08 4.81 16 4 H -0.01 -0.27 7.47 -51.93 -0.39 -0.66 16 5 C -0.57 -15.66 6.47 -34.44 -0.22 -15.88 16 6 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.02 0.52 5.28 -17.82 -0.09 0.43 16 8 N -0.92 -27.26 13.20 55.43 0.73 -26.53 16 9 Si 1.07 25.25 29.91 -169.99 -5.08 20.17 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 N -0.50 -10.68 4.63 -223.88 -1.04 -11.72 16 14 C 0.03 0.62 5.31 -1.90 -0.01 0.61 16 15 C -0.11 -1.66 5.23 -24.87 -0.13 -1.79 16 16 C -0.07 -1.14 0.76 -153.15 -0.12 -1.25 16 17 C -0.13 -1.85 8.06 37.16 0.30 -1.55 16 18 C 0.08 1.05 5.43 -3.82 -0.02 1.03 16 19 N -0.85 -9.41 8.79 -10.37 -0.09 -9.50 16 20 C 0.06 1.27 5.28 -2.75 -0.01 1.25 16 21 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 1.61 6.89 -51.92 -0.36 1.25 16 24 H 0.02 0.49 6.64 -51.93 -0.34 0.14 16 25 H 0.06 1.57 6.18 -51.93 -0.32 1.25 16 26 H 0.27 8.00 5.62 -40.82 -0.23 7.77 16 27 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 28 H 0.07 1.25 7.55 -51.93 -0.39 0.86 16 29 H 0.06 0.90 7.81 -51.93 -0.41 0.49 16 30 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.43 8.11 -51.93 -0.42 0.01 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.34 3.49 8.07 -39.29 -0.32 3.17 16 37 H 0.34 3.07 9.08 -39.29 -0.36 2.71 16 38 H 0.07 1.39 7.68 -51.93 -0.40 0.99 16 39 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -29.01 295.39 -8.02 -37.04 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.82 Total: 3.59 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.17 Total: -17.49 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.40 Total: -47.75 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.01 -8.02 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389259386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.600 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds