Wall clock time and date at job start Mon Mar 30 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47372 * 2 1 4 4 H 1.09004 * 109.47569 * 175.24731 * 3 2 1 5 5 C 1.50697 * 109.47164 * 55.24488 * 3 2 1 6 6 H 1.08004 * 120.00550 * 245.72713 * 5 3 2 7 7 C 1.37875 * 119.99886 * 65.72789 * 5 3 2 8 8 N 1.31515 * 120.00199 * 5.50446 * 7 5 3 9 9 Si 1.86800 * 120.00236 * 185.50950 * 7 5 3 10 10 H 1.48494 * 109.47212 * 269.99776 * 9 7 5 11 11 H 1.48499 * 109.47181 * 29.99753 * 9 7 5 12 12 H 1.48500 * 109.47408 * 149.99801 * 9 7 5 13 13 N 1.46902 * 109.47018 * 295.24841 * 3 2 1 14 14 C 1.48529 * 110.99951 * 302.24051 * 13 3 2 15 15 C 1.54941 * 103.22937 * 200.27738 * 14 13 3 16 16 C 1.54600 * 102.91795 * 37.41700 * 15 14 13 17 17 C 1.52998 * 110.39390 * 97.00230 * 16 15 14 18 18 C 1.53005 * 110.30696 * 219.12693 * 16 15 14 19 19 N 1.46900 * 109.47096 * 295.71337 * 18 16 15 20 20 C 1.47905 * 110.99992 * 184.84759 * 13 3 2 21 21 H 1.08995 * 109.47678 * 64.94775 * 1 2 3 22 22 H 1.08999 * 109.47108 * 184.95170 * 1 2 3 23 23 H 1.09007 * 109.46777 * 304.94972 * 1 2 3 24 24 H 1.09006 * 109.46989 * 240.00157 * 2 1 3 25 25 H 1.08998 * 109.47700 * 120.00213 * 2 1 3 26 26 H 0.96999 * 119.99730 * 355.16163 * 8 7 5 27 27 H 1.08998 * 110.67144 * 318.71348 * 14 13 3 28 28 H 1.09004 * 110.66869 * 81.84946 * 14 13 3 29 29 H 1.08996 * 110.72446 * 279.05822 * 15 14 13 30 30 H 1.08998 * 110.87722 * 155.84214 * 15 14 13 31 31 H 1.08997 * 109.46969 * 304.23205 * 17 16 15 32 32 H 1.08998 * 109.46948 * 64.23388 * 17 16 15 33 33 H 1.09004 * 109.47243 * 184.23539 * 17 16 15 34 34 H 1.08996 * 109.47089 * 55.71718 * 18 16 15 35 35 H 1.08998 * 109.47043 * 175.71706 * 18 16 15 36 36 H 1.00906 * 111.00018 * 56.04635 * 19 18 16 37 37 H 1.00899 * 110.99954 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.91429 * 265.19346 * 20 13 3 39 39 H 1.08997 * 109.91585 * 26.48812 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1267 1.4437 0.0851 5 6 1.4439 2.1861 1.1673 6 1 0.7595 3.0035 0.9943 7 6 1.7721 1.8229 2.4562 8 7 2.6862 0.9012 2.6672 9 14 0.9183 2.6398 3.9030 10 1 1.6828 3.8451 4.3127 11 1 -0.4566 3.0369 3.5066 12 1 0.8499 1.6869 5.0399 13 7 1.6463 2.1010 -1.2527 14 6 2.1721 1.3635 -2.4299 15 6 2.1352 2.4245 -3.5584 16 6 2.5356 3.7246 -2.8238 17 6 4.0287 4.0030 -3.0085 18 6 1.7085 4.9032 -3.3413 19 7 2.0231 5.1381 -4.7569 20 6 2.2206 3.4613 -1.3397 21 1 -0.3634 0.4351 -0.9309 22 1 -0.3633 -1.0238 0.0887 23 1 -0.3633 0.5888 0.8424 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.0790 0.4272 1.9176 27 1 3.1937 1.0291 -2.2495 28 1 1.5273 0.5194 -2.6744 29 1 1.1314 2.5101 -3.9746 30 1 2.8562 2.1854 -4.3401 31 1 4.6035 3.1409 -2.6702 32 1 4.2362 4.1873 -4.0625 33 1 4.3099 4.8792 -2.4242 34 1 0.6476 4.6758 -3.2377 35 1 1.9469 5.7959 -2.7632 36 1 1.8716 4.3040 -5.3042 37 1 1.4888 5.9120 -5.1224 38 1 1.4982 4.1931 -0.9779 39 1 3.1358 3.5162 -0.7503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389259386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:39 Heat of formation + Delta-G solvation = -32.745746 kcal Electronic energy + Delta-G solvation = -16946.388267 eV Core-core repulsion = 14501.117760 eV Total energy + Delta-G solvation = -2445.270507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69789 -37.59829 -35.07303 -33.22793 -31.66797 -30.62774 -27.83498 -27.02721 -25.72000 -24.40128 -22.98158 -21.04812 -19.69310 -18.73918 -17.18729 -16.59630 -16.38472 -15.66584 -15.43047 -15.36698 -14.87090 -14.57681 -14.33048 -13.92949 -13.58795 -13.29959 -13.17683 -12.95502 -12.71257 -12.64683 -12.55501 -11.98279 -11.92123 -11.86049 -11.71161 -11.57425 -11.36687 -11.30470 -10.52820 -10.44281 -9.54640 -9.10307 -8.53990 -6.24967 1.51397 1.59807 1.77327 2.56509 3.22573 3.33171 3.51837 3.69633 3.78804 4.15464 4.32150 4.34322 4.37975 4.44731 4.51953 4.61123 4.71021 4.78620 4.80476 4.82073 4.90645 4.98438 5.04271 5.07219 5.18069 5.24855 5.30337 5.34916 5.38946 5.47675 5.67266 5.95075 6.08167 6.24836 6.37640 6.52020 6.67379 6.75633 7.52342 8.82009 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.008212 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.688072 B = 3408.941626 C = 3786.558672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C 0.202 3.798 4 H -0.051 1.051 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.029 4.029 8 N -0.942 5.942 9 Si 1.109 2.891 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.284 1.284 13 N -0.507 5.507 14 C 0.029 3.971 15 C -0.098 4.098 16 C -0.066 4.066 17 C -0.119 4.119 18 C 0.087 3.913 19 N -0.845 5.845 20 C 0.064 3.936 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.034 0.966 26 H 0.258 0.742 27 H 0.019 0.981 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.027 0.973 35 H 0.065 0.935 36 H 0.346 0.654 37 H 0.350 0.650 38 H 0.058 0.942 39 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 4.924 -13.635 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C 0.094 3.906 4 H -0.034 1.034 5 C -0.612 4.612 6 H 0.062 0.938 7 C -0.227 4.227 8 N -0.580 5.580 9 Si 0.932 3.068 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.210 1.210 13 N -0.231 5.231 14 C -0.099 4.099 15 C -0.136 4.136 16 C -0.067 4.067 17 C -0.176 4.176 18 C -0.044 4.044 19 N -0.376 5.376 20 C -0.065 4.065 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.083 0.917 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.076 0.924 39 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -2.420 5.168 -11.725 13.040 hybrid contribution 0.298 -0.592 -1.184 1.357 sum -2.123 4.576 -12.909 13.859 Atomic orbital electron populations 1.21338 0.94718 0.99165 1.01473 1.21524 0.97800 0.97046 0.98435 1.19400 0.90338 0.92346 0.88533 1.03395 1.22008 1.29094 1.17907 0.92190 0.93763 1.26998 0.95619 0.97025 1.03041 1.70881 1.26192 1.25837 1.35133 0.83023 0.75630 0.75258 0.72842 1.20466 1.19632 1.21009 1.64706 1.54602 1.01824 1.01919 1.23239 0.96959 0.97913 0.91749 1.22521 1.02153 0.92550 0.96386 1.21434 0.96577 0.95772 0.92962 1.21671 0.93363 0.99780 1.02826 1.21612 0.95898 0.96699 0.90197 1.58683 1.65023 1.11597 1.02335 1.22654 0.96423 0.92012 0.95389 0.92711 0.93797 0.94089 0.93855 0.94765 0.93141 0.96260 0.90283 0.90339 0.89307 0.95036 0.89909 0.93558 0.95513 0.91671 0.84109 0.83667 0.92406 0.97097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.53 71.98 0.69 -4.05 16 2 C -0.11 -5.20 5.18 30.59 0.16 -5.04 16 3 C 0.20 10.34 1.10 44.17 0.05 10.39 16 4 H -0.05 -3.00 7.47 -2.38 -0.02 -3.02 16 5 C -0.57 -32.14 6.47 25.60 0.17 -31.97 16 6 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 7 C -0.03 -1.66 5.28 84.65 0.45 -1.21 16 8 N -0.94 -57.75 13.20 21.45 0.28 -57.47 16 9 Si 1.11 51.19 29.91 68.60 2.05 53.24 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 N -0.51 -21.69 4.63 -862.22 -3.99 -25.68 16 14 C 0.03 1.03 5.31 86.65 0.46 1.49 16 15 C -0.10 -2.64 5.23 31.80 0.17 -2.47 16 16 C -0.07 -1.94 0.76 -51.30 -0.04 -1.98 16 17 C -0.12 -3.34 8.06 71.98 0.58 -2.76 16 18 C 0.09 2.14 5.43 86.30 0.47 2.61 16 19 N -0.85 -15.79 8.79 -186.72 -1.64 -17.43 16 20 C 0.06 2.57 5.28 86.44 0.46 3.02 16 21 H 0.05 2.21 7.89 -2.39 -0.02 2.19 16 22 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.04 1.96 6.89 -2.38 -0.02 1.94 16 24 H 0.04 1.84 6.64 -2.38 -0.02 1.83 16 25 H 0.03 1.79 6.18 -2.39 -0.01 1.78 16 26 H 0.26 16.02 5.62 -92.71 -0.52 15.50 16 27 H 0.02 0.72 8.02 -2.39 -0.02 0.70 16 28 H 0.08 2.63 7.55 -2.38 -0.02 2.62 16 29 H 0.08 1.92 7.81 -2.39 -0.02 1.90 16 30 H 0.09 2.00 7.86 -2.39 -0.02 1.98 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 2.01 7.54 -2.39 -0.02 1.99 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.03 0.68 8.11 -2.39 -0.02 0.66 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.35 5.70 8.07 -89.69 -0.72 4.98 16 37 H 0.35 5.17 9.08 -89.69 -0.81 4.35 16 38 H 0.06 2.39 7.68 -2.38 -0.02 2.37 16 39 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 Total: -1.00 -63.94 295.39 0.03 -63.92 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.27 Total: 15.40 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 3.60 Total: -31.97 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.35 Total: -100.59 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.24 kcal Total: -63.94 0.03 -63.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389259386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.172 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds