Wall clock time and date at job start Mon Mar 30 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46776 * 2 1 4 4 H 1.08997 * 109.46448 * 180.63944 * 3 2 1 5 5 C 1.50699 * 109.47147 * 300.63480 * 3 2 1 6 6 H 1.07995 * 120.00240 * 119.72863 * 5 3 2 7 7 C 1.37884 * 119.99878 * 300.00820 * 5 3 2 8 8 N 1.31506 * 120.00058 * 359.71630 * 7 5 3 9 9 Si 1.86797 * 119.99572 * 179.72679 * 7 5 3 10 10 H 1.48498 * 109.47691 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47350 * 119.99667 * 9 7 5 12 12 H 1.48504 * 109.46804 * 239.99096 * 9 7 5 13 13 N 1.46892 * 109.47168 * 60.63719 * 3 2 1 14 14 C 1.46897 * 110.99958 * 87.41543 * 13 3 2 15 15 C 1.53002 * 109.47366 * 175.32476 * 14 13 3 16 16 N 1.46901 * 115.55144 * 34.18560 * 15 14 13 17 17 C 1.46905 * 110.99735 * 65.35809 * 16 15 14 18 18 C 1.46899 * 111.00065 * 189.31337 * 16 15 14 19 19 C 1.53004 * 117.49728 * 248.48057 * 15 14 13 20 20 C 1.52995 * 59.99836 * 252.50380 * 19 15 14 21 21 H 1.08996 * 109.47305 * 185.15229 * 1 2 3 22 22 H 1.09002 * 109.47369 * 305.15648 * 1 2 3 23 23 H 1.09007 * 109.47066 * 65.15682 * 1 2 3 24 24 H 1.08998 * 109.47273 * 239.99975 * 2 1 3 25 25 H 1.08995 * 109.46965 * 119.99667 * 2 1 3 26 26 H 0.97002 * 120.00180 * 180.02562 * 8 7 5 27 27 H 1.00903 * 111.00203 * 211.36660 * 13 3 2 28 28 H 1.09004 * 109.46924 * 295.31986 * 14 13 3 29 29 H 1.09002 * 109.47642 * 55.31887 * 14 13 3 30 30 H 1.08994 * 109.46951 * 64.75945 * 17 16 15 31 31 H 1.09004 * 109.46675 * 184.75833 * 17 16 15 32 32 H 1.08993 * 109.46818 * 304.75408 * 17 16 15 33 33 H 1.08999 * 109.47300 * 60.00612 * 18 16 15 34 34 H 1.09002 * 109.46939 * 180.02562 * 18 16 15 35 35 H 1.09000 * 109.47137 * 299.99889 * 18 16 15 36 36 H 1.08996 * 117.49705 * 359.97438 * 19 15 14 37 37 H 1.08998 * 117.49683 * 145.01692 * 19 15 14 38 38 H 1.09000 * 117.50198 * 252.50690 * 20 19 15 39 39 H 1.09011 * 117.51253 * 107.48220 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4425 -0.0115 5 6 1.5248 2.1575 -1.2225 6 1 0.9013 3.0326 -1.1137 7 6 1.8447 1.6909 -2.4800 8 7 2.6039 0.6254 -2.6125 9 14 1.1997 2.5727 -3.9952 10 1 0.3742 3.7345 -3.5781 11 1 2.3428 3.0465 -4.8163 12 1 0.3691 1.6377 -4.7959 13 7 1.5629 2.1306 1.2070 14 6 2.4887 1.9276 2.3293 15 6 2.0216 2.7511 3.5312 16 7 0.5664 2.8861 3.6797 17 6 -0.0571 1.5859 3.9605 18 6 0.2322 3.8663 4.7216 19 6 2.8885 3.9390 3.9535 20 6 2.8577 2.6716 4.8100 21 1 -0.3634 -1.0235 0.0923 22 1 -0.3634 0.5917 0.8402 23 1 -0.3633 0.4318 -0.9326 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.8293 0.2974 -3.4971 27 1 1.4192 3.1135 1.0300 28 1 2.5079 0.8713 2.5980 29 1 3.4893 2.2463 2.0372 30 1 0.2889 1.2182 4.9265 31 1 -1.1409 1.6998 3.9820 32 1 0.2182 0.8752 3.1813 33 1 0.6477 4.8376 4.4534 34 1 -0.8512 3.9463 4.8110 35 1 0.6520 3.5418 5.6737 36 1 3.7918 4.1335 3.3753 37 1 2.3791 4.8210 4.3414 38 1 2.3281 2.7199 5.7615 39 1 3.7405 2.0323 4.7952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397833060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:39 Heat of formation + Delta-G solvation = 34.215400 kcal Electronic energy + Delta-G solvation = -16665.815219 eV Core-core repulsion = 14223.448365 eV Total energy + Delta-G solvation = -2442.366854 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.19480 -35.83650 -33.56646 -32.25484 -30.48061 -27.74129 -26.45062 -24.60968 -23.36883 -22.92695 -22.26241 -18.97010 -18.60961 -16.59888 -15.95888 -14.98974 -14.74831 -14.32665 -14.00428 -13.50870 -13.15723 -13.06475 -12.52989 -12.26711 -12.04490 -11.80446 -11.74330 -11.51902 -11.03005 -10.92333 -10.85728 -10.78356 -10.40986 -10.31279 -10.03833 -9.65093 -9.60656 -9.24651 -8.68303 -8.39324 -7.83504 -7.02073 -5.95097 -3.99345 3.32651 3.40882 3.45441 3.86813 4.19822 4.46285 4.83299 5.02801 5.07613 5.33664 5.36665 5.44444 5.72242 5.75343 5.81788 5.85010 5.90500 6.08744 6.10233 6.20978 6.27281 6.35942 6.44337 6.60758 6.80409 6.94948 7.31649 7.33186 7.37854 7.46582 7.59963 7.83645 7.89077 7.96207 8.37489 8.55458 8.83215 9.13610 9.65314 11.11026 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034649 B = 0.007063 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.914665 B = 3963.401192 C = 4079.020716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.100 4.100 3 C 0.213 3.787 4 H -0.003 1.003 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.666 5.666 14 C 0.107 3.893 15 C 0.064 3.936 16 N -0.484 5.484 17 C 0.035 3.965 18 C 0.015 3.985 19 C -0.179 4.179 20 C -0.221 4.221 21 H 0.010 0.990 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.007 0.993 26 H 0.258 0.742 27 H 0.336 0.664 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.012 0.988 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.021 0.979 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 3.267 12.716 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.106 3.894 4 H 0.014 0.986 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.297 5.297 14 C -0.024 4.024 15 C -0.027 4.027 16 N -0.205 5.205 17 C -0.113 4.113 18 C -0.133 4.133 19 C -0.216 4.216 20 C -0.261 4.261 21 H 0.029 0.971 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.215 2.803 12.288 12.797 hybrid contribution 0.831 0.701 -0.266 1.119 sum -1.384 3.504 12.022 12.599 Atomic orbital electron populations 1.21446 0.97515 0.96945 1.01724 1.21405 0.95039 0.98372 0.99069 1.19146 0.92832 0.91549 0.85897 0.98556 1.21268 1.31017 1.11912 0.90328 0.92222 1.24886 0.95186 0.95030 0.98862 1.69900 1.37134 1.23189 1.22805 0.86554 0.78617 0.79758 0.83163 1.19760 1.21279 1.21102 1.60529 1.45955 1.17298 1.05936 1.21356 0.93670 0.97531 0.89806 1.22042 0.85840 1.00091 0.94771 1.61671 1.06473 1.08907 1.43423 1.22301 0.98656 0.90955 0.99365 1.22563 1.01155 0.96856 0.92743 1.23317 1.02059 0.92659 1.03600 1.23467 1.04032 1.01997 0.96572 0.97130 0.93042 0.93121 0.89867 0.97452 0.93161 0.84586 0.91973 0.95792 0.96930 0.92043 0.89535 0.91337 0.91565 0.96052 0.88548 0.88610 0.89297 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.48 37.16 0.35 -2.34 16 2 C -0.10 -2.44 5.60 -26.73 -0.15 -2.59 16 3 C 0.21 5.31 2.31 -68.87 -0.16 5.15 16 4 H 0.00 -0.09 7.69 -51.93 -0.40 -0.49 16 5 C -0.51 -13.69 7.39 -34.44 -0.25 -13.94 16 6 H 0.06 1.62 7.58 -52.49 -0.40 1.22 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -25.44 11.34 55.43 0.63 -24.82 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.67 -13.99 4.90 -107.95 -0.53 -14.52 16 14 C 0.11 1.95 4.92 -3.82 -0.02 1.93 16 15 C 0.06 0.97 2.07 -131.60 -0.27 0.70 16 16 N -0.48 -7.28 4.68 -235.40 -1.10 -8.38 16 17 C 0.03 0.51 9.49 60.07 0.57 1.08 16 18 C 0.02 0.18 8.61 60.06 0.52 0.70 16 19 C -0.18 -2.38 9.40 -26.73 -0.25 -2.63 16 20 C -0.22 -2.86 9.64 -26.74 -0.26 -3.11 16 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 22 H 0.05 1.12 7.47 -51.93 -0.39 0.73 16 23 H 0.05 1.23 7.39 -51.93 -0.38 0.85 16 24 H 0.08 2.26 6.10 -51.93 -0.32 1.95 16 25 H 0.01 0.16 7.70 -51.93 -0.40 -0.24 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.34 7.31 8.11 -39.29 -0.32 6.99 16 28 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 29 H 0.02 0.45 7.69 -51.93 -0.40 0.05 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.44 7.27 -51.93 -0.38 1.06 16 33 H 0.07 0.81 6.28 -51.93 -0.33 0.48 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.02 0.24 6.38 -51.93 -0.33 -0.09 16 36 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 37 H 0.10 1.16 5.98 -51.93 -0.31 0.85 16 38 H 0.09 1.08 6.58 -51.93 -0.34 0.74 16 39 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 302.92 15.07 4.56 4.56 Total: -1.00 -27.55 302.92 -8.23 -35.78 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.75 Total: 4.44 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -0.02 Total: -13.46 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -1.00 Total: -47.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.55 -8.23 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397833060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.999 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds