Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46776 * 2 1 4 4 H 1.08997 * 109.46448 * 180.63944 * 3 2 1 5 5 C 1.50699 * 109.47147 * 300.63480 * 3 2 1 6 6 H 1.07995 * 120.00240 * 119.72863 * 5 3 2 7 7 C 1.37884 * 119.99878 * 300.00820 * 5 3 2 8 8 N 1.31506 * 120.00058 * 359.71630 * 7 5 3 9 9 Si 1.86797 * 119.99572 * 179.72679 * 7 5 3 10 10 H 1.48498 * 109.47691 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47350 * 119.99667 * 9 7 5 12 12 H 1.48504 * 109.46804 * 239.99096 * 9 7 5 13 13 N 1.46892 * 109.47168 * 60.63719 * 3 2 1 14 14 C 1.46897 * 110.99958 * 87.41543 * 13 3 2 15 15 C 1.53002 * 109.47366 * 175.32476 * 14 13 3 16 16 N 1.46901 * 115.55144 * 34.18560 * 15 14 13 17 17 C 1.46905 * 110.99735 * 65.35809 * 16 15 14 18 18 C 1.46899 * 111.00065 * 189.31337 * 16 15 14 19 19 C 1.53004 * 117.49728 * 248.48057 * 15 14 13 20 20 C 1.52995 * 59.99836 * 252.50380 * 19 15 14 21 21 H 1.08996 * 109.47305 * 185.15229 * 1 2 3 22 22 H 1.09002 * 109.47369 * 305.15648 * 1 2 3 23 23 H 1.09007 * 109.47066 * 65.15682 * 1 2 3 24 24 H 1.08998 * 109.47273 * 239.99975 * 2 1 3 25 25 H 1.08995 * 109.46965 * 119.99667 * 2 1 3 26 26 H 0.97002 * 120.00180 * 180.02562 * 8 7 5 27 27 H 1.00903 * 111.00203 * 211.36660 * 13 3 2 28 28 H 1.09004 * 109.46924 * 295.31986 * 14 13 3 29 29 H 1.09002 * 109.47642 * 55.31887 * 14 13 3 30 30 H 1.08994 * 109.46951 * 64.75945 * 17 16 15 31 31 H 1.09004 * 109.46675 * 184.75833 * 17 16 15 32 32 H 1.08993 * 109.46818 * 304.75408 * 17 16 15 33 33 H 1.08999 * 109.47300 * 60.00612 * 18 16 15 34 34 H 1.09002 * 109.46939 * 180.02562 * 18 16 15 35 35 H 1.09000 * 109.47137 * 299.99889 * 18 16 15 36 36 H 1.08996 * 117.49705 * 359.97438 * 19 15 14 37 37 H 1.08998 * 117.49683 * 145.01692 * 19 15 14 38 38 H 1.09000 * 117.50198 * 252.50690 * 20 19 15 39 39 H 1.09011 * 117.51253 * 107.48220 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4425 -0.0115 5 6 1.5248 2.1575 -1.2225 6 1 0.9013 3.0326 -1.1137 7 6 1.8447 1.6909 -2.4800 8 7 2.6039 0.6254 -2.6125 9 14 1.1997 2.5727 -3.9952 10 1 0.3742 3.7345 -3.5781 11 1 2.3428 3.0465 -4.8163 12 1 0.3691 1.6377 -4.7959 13 7 1.5629 2.1306 1.2070 14 6 2.4887 1.9276 2.3293 15 6 2.0216 2.7511 3.5312 16 7 0.5664 2.8861 3.6797 17 6 -0.0571 1.5859 3.9605 18 6 0.2322 3.8663 4.7216 19 6 2.8885 3.9390 3.9535 20 6 2.8577 2.6716 4.8100 21 1 -0.3634 -1.0235 0.0923 22 1 -0.3634 0.5917 0.8402 23 1 -0.3633 0.4318 -0.9326 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.8293 0.2974 -3.4971 27 1 1.4192 3.1135 1.0300 28 1 2.5079 0.8713 2.5980 29 1 3.4893 2.2463 2.0372 30 1 0.2889 1.2182 4.9265 31 1 -1.1409 1.6998 3.9820 32 1 0.2182 0.8752 3.1813 33 1 0.6477 4.8376 4.4534 34 1 -0.8512 3.9463 4.8110 35 1 0.6520 3.5418 5.6737 36 1 3.7918 4.1335 3.3753 37 1 2.3791 4.8210 4.3414 38 1 2.3281 2.7199 5.7615 39 1 3.7405 2.0323 4.7952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397833060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = 16.719511 kcal Electronic energy + Delta-G solvation = -16666.573898 eV Core-core repulsion = 14223.448365 eV Total energy + Delta-G solvation = -2443.125532 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35917 -37.68621 -34.75117 -34.12275 -32.34837 -29.15998 -28.00151 -26.16944 -24.93549 -24.53696 -23.31841 -20.90545 -19.85948 -18.34714 -17.35294 -16.84124 -16.12285 -15.78904 -15.36895 -15.00431 -14.87022 -14.48714 -14.10353 -13.87332 -13.50430 -13.29823 -12.99533 -12.83151 -12.75013 -12.62813 -12.37147 -12.13837 -12.02435 -11.90975 -11.73975 -11.44132 -11.14022 -10.87943 -10.71893 -10.49696 -8.91193 -8.81404 -8.06132 -6.17401 1.41565 1.44363 1.55349 2.45060 2.76961 3.10114 3.22659 3.56039 3.89857 4.00629 4.16684 4.40362 4.50988 4.64945 4.66845 4.73137 4.76372 4.80530 4.85389 4.86206 4.90999 4.98890 5.01353 5.14042 5.21366 5.25205 5.37443 5.45399 5.62536 5.76753 5.88438 5.96225 6.27077 6.32457 6.34607 6.61908 6.91748 7.14545 7.51574 8.99173 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.034649 B = 0.007063 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.914665 B = 3963.401192 C = 4079.020716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C 0.220 3.780 4 H -0.041 1.041 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.654 5.654 14 C 0.111 3.889 15 C 0.045 3.955 16 N -0.503 5.503 17 C 0.040 3.960 18 C 0.017 3.983 19 C -0.171 4.171 20 C -0.201 4.201 21 H 0.031 0.969 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.053 0.947 25 H 0.016 0.984 26 H 0.259 0.741 27 H 0.332 0.668 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 4.215 13.983 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C 0.112 3.888 4 H -0.024 1.024 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.284 5.284 14 C -0.019 4.019 15 C -0.047 4.047 16 N -0.225 5.225 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.209 4.209 20 C -0.241 4.241 21 H 0.050 0.950 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.076 3.759 13.576 14.419 hybrid contribution 1.131 0.394 -0.611 1.345 sum -1.945 4.153 12.965 13.752 Atomic orbital electron populations 1.21287 0.95879 0.98270 1.00768 1.21269 0.96348 0.97724 0.98023 1.18943 0.90463 0.92282 0.87133 1.02367 1.21502 1.30816 1.11877 0.91366 0.92614 1.25617 0.95407 0.95689 1.01624 1.70032 1.38101 1.24381 1.23379 0.85588 0.78058 0.78774 0.79710 1.19127 1.20956 1.20827 1.60447 1.46384 1.16572 1.05039 1.21291 0.92672 0.97832 0.90147 1.21786 0.86690 1.01511 0.94681 1.61624 1.06139 1.09531 1.45186 1.22212 0.99224 0.90446 0.98932 1.22593 1.01923 0.96164 0.92378 1.23388 1.01336 0.93017 1.03138 1.23483 1.03271 1.01344 0.96019 0.94968 0.92278 0.95273 0.92809 0.96492 0.93155 0.85039 0.92804 0.96887 0.95727 0.91083 0.92225 0.90911 0.90614 0.94851 0.88903 0.86992 0.87722 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.70 9.48 71.98 0.68 -4.01 16 2 C -0.09 -4.70 5.60 30.60 0.17 -4.53 16 3 C 0.22 11.23 2.31 44.17 0.10 11.33 16 4 H -0.04 -2.37 7.69 -2.39 -0.02 -2.39 16 5 C -0.52 -28.31 7.39 25.60 0.19 -28.12 16 6 H 0.06 3.04 7.58 -2.91 -0.02 3.02 16 7 C 0.02 0.85 5.30 84.66 0.45 1.30 16 8 N -0.92 -53.48 11.34 21.45 0.24 -53.23 16 9 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.65 -27.72 4.90 -495.46 -2.43 -30.15 16 14 C 0.11 4.05 4.92 86.30 0.42 4.48 16 15 C 0.04 1.29 2.07 3.53 0.01 1.30 16 16 N -0.50 -14.17 4.68 -898.68 -4.21 -18.38 16 17 C 0.04 1.08 9.49 127.69 1.21 2.29 16 18 C 0.02 0.37 8.61 127.69 1.10 1.47 16 19 C -0.17 -4.19 9.40 30.59 0.29 -3.90 16 20 C -0.20 -4.70 9.64 30.59 0.29 -4.41 16 21 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.06 2.53 7.47 -2.39 -0.02 2.51 16 23 H 0.03 1.40 7.39 -2.38 -0.02 1.38 16 24 H 0.05 3.00 6.10 -2.39 -0.01 2.98 16 25 H 0.02 0.77 7.70 -2.39 -0.02 0.75 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.33 14.51 8.11 -89.69 -0.73 13.78 16 28 H 0.05 2.03 7.66 -2.38 -0.02 2.01 16 29 H 0.01 0.50 7.69 -2.39 -0.02 0.49 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.93 7.27 -2.39 -0.02 1.91 16 33 H 0.07 1.49 6.28 -2.39 -0.02 1.47 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.03 0.64 6.38 -2.39 -0.02 0.62 16 36 H 0.09 2.33 8.05 -2.39 -0.02 2.31 16 37 H 0.11 2.38 5.98 -2.39 -0.01 2.36 16 38 H 0.10 2.15 6.58 -2.39 -0.02 2.13 16 39 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -58.83 302.92 0.84 -57.99 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.28 Total: 20.45 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.92 Total: -22.80 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -6.39 Total: -101.76 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -58.83 0.84 -57.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397833060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.712 kcal (2) G-P(sol) polarization free energy of solvation -58.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds