Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 H 1.08998 * 109.47286 * 305.96794 * 3 2 1 5 5 C 1.50699 * 109.46855 * 185.96715 * 3 2 1 6 6 H 1.08000 * 120.00122 * 270.96659 * 5 3 2 7 7 C 1.37877 * 120.00075 * 90.97453 * 5 3 2 8 8 N 1.31517 * 120.00143 * 182.59462 * 7 5 3 9 9 Si 1.86803 * 119.99951 * 2.59062 * 7 5 3 10 10 H 1.48495 * 109.47047 * 94.07166 * 9 7 5 11 11 H 1.48498 * 109.46944 * 214.07227 * 9 7 5 12 12 H 1.48502 * 109.47181 * 334.07153 * 9 7 5 13 13 N 1.46904 * 109.46761 * 65.96646 * 3 2 1 14 14 C 1.46894 * 110.99842 * 220.15462 * 13 3 2 15 15 H 1.08997 * 109.47062 * 35.63723 * 14 13 3 16 16 C 1.53004 * 109.47567 * 275.63330 * 14 13 3 17 17 C 1.53004 * 109.46932 * 155.63582 * 14 13 3 18 18 H 1.08995 * 109.87790 * 59.49533 * 17 14 13 19 19 C 1.54320 * 109.88595 * 298.46116 * 17 14 13 20 20 C 1.55398 * 102.89721 * 218.40439 * 19 17 14 21 21 C 1.54903 * 101.74212 * 35.48639 * 20 19 17 22 22 N 1.47443 * 109.88646 * 180.52893 * 17 14 13 23 23 H 1.08997 * 109.46742 * 306.27379 * 1 2 3 24 24 H 1.09000 * 109.46981 * 66.26574 * 1 2 3 25 25 H 1.08998 * 109.47367 * 186.27031 * 1 2 3 26 26 H 1.09005 * 109.46500 * 240.00525 * 2 1 3 27 27 H 1.08991 * 109.47008 * 120.00648 * 2 1 3 28 28 H 0.97001 * 119.99969 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00108 * 344.11502 * 13 3 2 30 30 H 1.09006 * 109.46531 * 60.00152 * 16 14 13 31 31 H 1.08996 * 109.47115 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.46932 * 300.00716 * 16 14 13 33 33 H 1.08996 * 110.70634 * 336.69753 * 19 17 14 34 34 H 1.09004 * 110.70380 * 99.92840 * 19 17 14 35 35 H 1.08996 * 110.87727 * 277.39647 * 20 19 17 36 36 H 1.09004 * 111.05033 * 153.64906 * 20 19 17 37 37 H 1.09004 * 110.37371 * 204.18379 * 21 20 19 38 38 H 1.09004 * 110.37343 * 81.84271 * 21 20 19 39 39 H 1.00896 * 111.00657 * 356.14623 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5922 1.9863 -0.8317 5 6 3.5398 1.4449 -0.1477 6 1 4.1688 1.3976 0.7289 7 6 4.1089 1.5077 -1.4020 8 7 5.4165 1.4584 -1.5340 9 14 3.0227 1.6627 -2.9138 10 1 2.8779 3.0959 -3.2744 11 1 3.6419 0.9276 -4.0457 12 1 1.6847 1.0879 -2.6230 13 7 1.6715 2.0921 1.2650 14 6 1.2415 3.4784 1.0390 15 1 0.7010 3.5418 0.0947 16 6 2.4685 4.3910 0.9867 17 6 0.3253 3.9209 2.1818 18 1 0.8567 3.8515 3.1309 19 6 -0.9347 3.0306 2.2191 20 6 -2.0613 4.0390 2.5780 21 6 -1.5950 5.3123 1.8292 22 7 -0.1222 5.3077 1.9576 23 1 -0.3633 0.6080 0.8285 24 1 -0.3633 0.4136 -0.9408 25 1 -0.3634 -1.0215 0.1122 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.8169 1.5029 -2.4164 29 1 0.9581 1.5662 1.7471 30 1 3.1212 4.0757 0.1726 31 1 2.1493 5.4197 0.8195 32 1 3.0091 4.3275 1.9311 33 1 -1.1174 2.5803 1.2435 34 1 -0.8417 2.2632 2.9876 35 1 -2.1006 4.2109 3.6536 36 1 -3.0264 3.6973 2.2036 37 1 -2.0141 6.2029 2.2976 38 1 -1.8845 5.2627 0.7795 39 1 0.3136 5.7001 1.1365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400359780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = -9.131087 kcal Electronic energy + Delta-G solvation = -16857.373668 eV Core-core repulsion = 14413.127169 eV Total energy + Delta-G solvation = -2444.246498 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.10573 -36.38570 -33.07349 -32.00963 -30.29731 -28.99395 -27.45162 -26.70865 -22.77321 -22.00388 -20.93729 -19.77279 -19.47440 -16.85803 -16.42526 -15.87963 -14.85272 -14.35576 -14.03964 -13.43407 -13.19080 -12.92508 -12.77014 -12.67319 -12.17831 -11.95288 -11.78276 -11.72053 -11.15544 -11.14217 -10.94139 -10.89955 -10.66494 -10.61168 -10.22420 -10.08229 -9.75718 -9.72186 -9.21454 -8.52144 -8.28640 -7.31696 -6.02354 -3.97586 3.24647 3.34634 3.35324 4.30039 4.42249 4.72445 4.79500 4.93339 5.14812 5.26403 5.33113 5.52230 5.57825 5.70500 5.74184 5.82286 5.85109 5.88824 5.96805 5.98170 6.08960 6.20590 6.39162 6.42873 6.50487 6.56732 6.71980 6.78330 6.93835 7.02370 7.14954 7.24353 7.46303 7.77940 8.00038 8.37052 8.77860 9.13166 9.62136 11.11300 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030437 B = 0.008680 C = 0.007858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.721578 B = 3224.976701 C = 3562.205797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.130 4.130 3 C 0.187 3.813 4 H 0.010 0.990 5 C -0.483 4.483 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.901 5.901 9 Si 0.864 3.136 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.668 5.668 14 C 0.080 3.920 15 H 0.025 0.975 16 C -0.135 4.135 17 C 0.075 3.925 18 H 0.090 0.910 19 C -0.144 4.144 20 C -0.128 4.128 21 C 0.043 3.957 22 N -0.678 5.678 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.318 0.682 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.095 4.009 4.793 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.079 3.921 4 H 0.028 0.972 5 C -0.521 4.521 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.692 3.308 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.301 5.301 14 C -0.032 4.032 15 H 0.043 0.957 16 C -0.193 4.193 17 C -0.035 4.035 18 H 0.108 0.892 19 C -0.183 4.183 20 C -0.166 4.166 21 C -0.087 4.087 22 N -0.309 5.309 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.274 4.388 5.487 15.019 hybrid contribution -1.468 -0.482 -2.358 2.820 sum -14.742 3.906 3.128 15.569 Atomic orbital electron populations 1.21983 0.98760 1.00346 1.00490 1.22093 0.92247 1.00643 1.01944 1.19762 0.96877 0.89353 0.86136 0.97235 1.20999 0.89052 1.48301 0.93785 0.90203 1.24988 0.94634 0.95323 0.98408 1.69897 1.09447 1.51407 1.23240 0.87064 0.81591 0.78378 0.83786 1.20638 1.21432 1.18918 1.60760 1.43652 1.00626 1.25032 1.21978 0.94864 0.91738 0.94572 0.95677 1.21767 0.97831 0.95870 1.03798 1.22518 0.94451 0.86616 0.99923 0.89192 1.22990 0.95053 0.98301 1.01907 1.22714 0.98027 0.95022 1.00832 1.22830 0.89107 0.98325 0.98391 1.62140 1.05139 1.19120 1.44497 0.93525 0.93900 0.93673 0.92191 0.92062 0.92857 0.86334 0.90695 0.94295 0.92313 0.91520 0.90596 0.90851 0.91328 0.90700 0.94406 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.83 37.16 0.37 -2.27 16 2 C -0.13 -2.68 5.09 -26.73 -0.14 -2.81 16 3 C 0.19 4.26 1.49 -68.86 -0.10 4.16 16 4 H 0.01 0.24 4.53 -51.93 -0.24 0.00 16 5 C -0.48 -13.28 8.17 -34.44 -0.28 -13.56 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.86 21.32 26.64 -169.99 -4.53 16.79 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.21 6.29 56.52 0.36 -5.86 16 13 N -0.67 -13.29 6.14 -100.95 -0.62 -13.91 16 14 C 0.08 1.43 1.96 -67.71 -0.13 1.29 16 15 H 0.03 0.48 7.37 -51.93 -0.38 0.10 16 16 C -0.13 -2.55 9.12 37.16 0.34 -2.21 16 17 C 0.07 1.11 3.17 -66.72 -0.21 0.89 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 19 C -0.14 -1.84 5.19 -24.77 -0.13 -1.97 16 20 C -0.13 -1.40 7.08 -24.45 -0.17 -1.57 16 21 C 0.04 0.49 7.58 -2.30 -0.02 0.48 16 22 N -0.68 -9.27 7.23 -103.81 -0.75 -10.02 16 23 H 0.05 0.70 5.59 -51.93 -0.29 0.41 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.31 7.54 -51.93 -0.39 0.92 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.32 5.65 5.04 -39.29 -0.20 5.45 16 30 H 0.07 1.69 7.17 -51.93 -0.37 1.31 16 31 H 0.04 0.63 6.63 -51.93 -0.34 0.28 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.91 6.93 -51.93 -0.36 0.55 16 34 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.34 4.66 6.68 -39.29 -0.26 4.40 16 LS Contribution 293.82 15.07 4.43 4.43 Total: -1.00 -29.09 293.82 -7.94 -37.03 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.67 Total: 8.06 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.58 Total: -15.76 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.60 Total: -50.55 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.53 Total: 16.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.09 -7.94 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400359780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.895 kcal (2) G-P(sol) polarization free energy of solvation -29.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds