Wall clock time and date at job start Mon Mar 30 2020 03:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 H 1.08998 * 109.47286 * 305.96794 * 3 2 1 5 5 C 1.50699 * 109.46855 * 185.96715 * 3 2 1 6 6 H 1.08000 * 120.00122 * 270.96659 * 5 3 2 7 7 C 1.37877 * 120.00075 * 90.97453 * 5 3 2 8 8 N 1.31517 * 120.00143 * 182.59462 * 7 5 3 9 9 Si 1.86803 * 119.99951 * 2.59062 * 7 5 3 10 10 H 1.48495 * 109.47047 * 94.07166 * 9 7 5 11 11 H 1.48498 * 109.46944 * 214.07227 * 9 7 5 12 12 H 1.48502 * 109.47181 * 334.07153 * 9 7 5 13 13 N 1.46904 * 109.46761 * 65.96646 * 3 2 1 14 14 C 1.46894 * 110.99842 * 220.15462 * 13 3 2 15 15 H 1.08997 * 109.47062 * 35.63723 * 14 13 3 16 16 C 1.53004 * 109.47567 * 275.63330 * 14 13 3 17 17 C 1.53004 * 109.46932 * 155.63582 * 14 13 3 18 18 H 1.08995 * 109.87790 * 59.49533 * 17 14 13 19 19 C 1.54320 * 109.88595 * 298.46116 * 17 14 13 20 20 C 1.55398 * 102.89721 * 218.40439 * 19 17 14 21 21 C 1.54903 * 101.74212 * 35.48639 * 20 19 17 22 22 N 1.47443 * 109.88646 * 180.52893 * 17 14 13 23 23 H 1.08997 * 109.46742 * 306.27379 * 1 2 3 24 24 H 1.09000 * 109.46981 * 66.26574 * 1 2 3 25 25 H 1.08998 * 109.47367 * 186.27031 * 1 2 3 26 26 H 1.09005 * 109.46500 * 240.00525 * 2 1 3 27 27 H 1.08991 * 109.47008 * 120.00648 * 2 1 3 28 28 H 0.97001 * 119.99969 * 180.02562 * 8 7 5 29 29 H 1.00894 * 111.00108 * 344.11502 * 13 3 2 30 30 H 1.09006 * 109.46531 * 60.00152 * 16 14 13 31 31 H 1.08996 * 109.47115 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.46932 * 300.00716 * 16 14 13 33 33 H 1.08996 * 110.70634 * 336.69753 * 19 17 14 34 34 H 1.09004 * 110.70380 * 99.92840 * 19 17 14 35 35 H 1.08996 * 110.87727 * 277.39647 * 20 19 17 36 36 H 1.09004 * 111.05033 * 153.64906 * 20 19 17 37 37 H 1.09004 * 110.37371 * 204.18379 * 21 20 19 38 38 H 1.09004 * 110.37343 * 81.84271 * 21 20 19 39 39 H 1.00896 * 111.00657 * 356.14623 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5922 1.9863 -0.8317 5 6 3.5398 1.4449 -0.1477 6 1 4.1688 1.3976 0.7289 7 6 4.1089 1.5077 -1.4020 8 7 5.4165 1.4584 -1.5340 9 14 3.0227 1.6627 -2.9138 10 1 2.8779 3.0959 -3.2744 11 1 3.6419 0.9276 -4.0457 12 1 1.6847 1.0879 -2.6230 13 7 1.6715 2.0921 1.2650 14 6 1.2415 3.4784 1.0390 15 1 0.7010 3.5418 0.0947 16 6 2.4685 4.3910 0.9867 17 6 0.3253 3.9209 2.1818 18 1 0.8567 3.8515 3.1309 19 6 -0.9347 3.0306 2.2191 20 6 -2.0613 4.0390 2.5780 21 6 -1.5950 5.3123 1.8292 22 7 -0.1222 5.3077 1.9576 23 1 -0.3633 0.6080 0.8285 24 1 -0.3633 0.4136 -0.9408 25 1 -0.3634 -1.0215 0.1122 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.8169 1.5029 -2.4164 29 1 0.9581 1.5662 1.7471 30 1 3.1212 4.0757 0.1726 31 1 2.1493 5.4197 0.8195 32 1 3.0091 4.3275 1.9311 33 1 -1.1174 2.5803 1.2435 34 1 -0.8417 2.2632 2.9876 35 1 -2.1006 4.2109 3.6536 36 1 -3.0264 3.6973 2.2036 37 1 -2.0141 6.2029 2.2976 38 1 -1.8845 5.2627 0.7795 39 1 0.3136 5.7001 1.1365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400359780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:52 Heat of formation + Delta-G solvation = -30.734390 kcal Electronic energy + Delta-G solvation = -16858.310457 eV Core-core repulsion = 14413.127169 eV Total energy + Delta-G solvation = -2445.183288 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32367 -37.91514 -34.70652 -33.93642 -31.38965 -30.40473 -28.80140 -28.47832 -24.52121 -23.29800 -21.86163 -21.40863 -20.90961 -18.96555 -17.66914 -17.13279 -16.37873 -15.86950 -15.76783 -14.82958 -14.72378 -14.31251 -14.28027 -14.02841 -13.55958 -13.47337 -13.12298 -12.96174 -12.87730 -12.53778 -12.41710 -12.28430 -12.02924 -11.93136 -11.74254 -11.63479 -11.52117 -11.28348 -11.19829 -10.66114 -9.38787 -8.98077 -8.23616 -6.22498 1.27977 1.30448 1.40158 2.33386 3.07357 3.22560 3.57371 3.70943 3.87923 3.94044 4.27138 4.31267 4.32635 4.38524 4.47955 4.50893 4.59800 4.71857 4.80543 4.88907 4.92486 4.96513 5.05409 5.10660 5.12794 5.16811 5.22372 5.28560 5.40920 5.48845 5.56524 5.76862 5.97664 6.13772 6.39848 6.63011 6.82421 6.99031 7.41071 8.94217 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030437 B = 0.008680 C = 0.007858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.721578 B = 3224.976701 C = 3562.205797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.193 3.807 4 H 0.005 0.995 5 C -0.479 4.479 6 H 0.029 0.971 7 C 0.009 3.991 8 N -0.953 5.953 9 Si 0.928 3.072 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.241 1.241 13 N -0.678 5.678 14 C 0.083 3.917 15 H 0.022 0.978 16 C -0.129 4.129 17 C 0.084 3.916 18 H 0.078 0.922 19 C -0.144 4.144 20 C -0.120 4.120 21 C 0.039 3.961 22 N -0.684 5.684 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.262 0.738 29 H 0.334 0.666 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.644 4.235 4.882 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.084 3.916 4 H 0.023 0.977 5 C -0.518 4.518 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.595 5.595 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.164 1.164 13 N -0.312 5.312 14 C -0.028 4.028 15 H 0.040 0.960 16 C -0.187 4.187 17 C -0.026 4.026 18 H 0.096 0.904 19 C -0.182 4.182 20 C -0.158 4.158 21 C -0.090 4.090 22 N -0.315 5.315 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.862 4.613 5.603 18.358 hybrid contribution -0.295 -0.509 -2.264 2.339 sum -17.157 4.105 3.338 17.955 Atomic orbital electron populations 1.21881 0.95007 1.02458 1.01255 1.21964 0.95559 0.98276 1.01126 1.19552 0.93578 0.91208 0.87250 0.97701 1.21211 0.91533 1.47003 0.92020 0.95219 1.25776 0.95813 0.95335 1.01810 1.70061 1.11639 1.53763 1.23989 0.86029 0.80671 0.78514 0.79523 1.20249 1.21359 1.16413 1.60488 1.45026 1.01817 1.23822 1.21974 0.94709 0.90166 0.95937 0.96044 1.21690 0.97746 0.97912 1.01355 1.22340 0.94749 0.87940 0.97612 0.90375 1.22981 0.94539 0.98600 1.02087 1.22714 0.98101 0.93780 1.01209 1.22965 0.87541 0.99431 0.99056 1.62159 1.06743 1.18052 1.44552 0.91904 0.93804 0.91116 0.93777 0.92345 0.92930 0.84526 0.95023 0.91507 0.93373 0.91894 0.89676 0.90270 0.89345 0.89329 0.93938 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.83 71.98 0.71 -3.70 16 2 C -0.13 -5.16 5.09 30.59 0.16 -5.00 16 3 C 0.19 8.73 1.49 44.17 0.07 8.80 16 4 H 0.01 0.25 4.53 -2.39 -0.01 0.24 16 5 C -0.48 -27.30 8.17 25.60 0.21 -27.09 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.51 5.47 84.65 0.46 0.97 16 8 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 9 Si 0.93 44.41 26.64 68.60 1.83 46.23 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 H -0.24 -10.50 6.29 99.48 0.63 -9.87 16 13 N -0.68 -26.56 6.14 -473.31 -2.91 -29.47 16 14 C 0.08 2.89 1.96 44.92 0.09 2.98 16 15 H 0.02 0.78 7.37 -2.39 -0.02 0.76 16 16 C -0.13 -4.94 9.12 71.98 0.66 -4.28 16 17 C 0.08 2.31 3.17 45.26 0.14 2.45 16 18 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 19 C -0.14 -3.20 5.19 31.87 0.17 -3.03 16 20 C -0.12 -2.15 7.08 32.07 0.23 -1.92 16 21 C 0.04 0.76 7.58 86.77 0.66 1.42 16 22 N -0.68 -17.04 7.23 -482.36 -3.49 -20.53 16 23 H 0.06 1.65 5.59 -2.39 -0.01 1.64 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.86 7.54 -2.38 -0.02 1.84 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.33 11.24 5.04 -89.70 -0.45 10.78 16 30 H 0.03 1.46 7.17 -2.38 -0.02 1.44 16 31 H 0.07 2.12 6.63 -2.39 -0.02 2.11 16 32 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 33 H 0.06 1.47 6.93 -2.39 -0.02 1.46 16 34 H 0.08 1.75 8.10 -2.38 -0.02 1.73 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.34 8.56 6.68 -89.70 -0.60 7.96 16 Total: -1.00 -65.43 293.82 -0.84 -66.27 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.11 Total: 26.02 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 3.54 Total: -28.40 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -6.09 Total: -110.12 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.83 Total: 46.23 kcal Total: -65.43 -0.84 -66.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400359780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.538 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds