Wall clock time and date at job start Mon Mar 30 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 H 1.08994 * 109.47193 * 305.63942 * 3 2 1 5 5 C 1.50706 * 109.46777 * 185.64118 * 3 2 1 6 6 H 1.07998 * 120.00462 * 240.00194 * 5 3 2 7 7 C 1.37878 * 119.99835 * 59.99958 * 5 3 2 8 8 N 1.31520 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99982 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46855 * 90.00568 * 9 7 5 11 11 H 1.48510 * 109.46981 * 210.00452 * 9 7 5 12 12 H 1.48498 * 109.46959 * 330.00084 * 9 7 5 13 13 N 1.46898 * 109.47137 * 65.64732 * 3 2 1 14 14 C 1.46900 * 110.99994 * 204.28527 * 13 3 2 15 15 H 1.09001 * 109.49982 * 325.94854 * 14 13 3 16 16 C 1.53035 * 109.50248 * 86.02281 * 14 13 3 17 17 N 1.46849 * 109.52201 * 179.07984 * 16 14 13 18 18 C 1.46847 * 111.23196 * 298.31885 * 17 16 14 19 19 C 1.53034 * 109.52405 * 61.72542 * 18 17 16 20 20 H 1.09001 * 109.50219 * 60.75837 * 19 18 17 21 21 C 1.53001 * 109.50532 * 180.87742 * 19 18 17 22 22 C 1.53121 * 109.50488 * 205.86702 * 14 13 3 23 23 H 1.09006 * 109.46953 * 293.70958 * 1 2 3 24 24 H 1.08999 * 109.47297 * 53.70155 * 1 2 3 25 25 H 1.08999 * 109.47745 * 173.70623 * 1 2 3 26 26 H 1.08997 * 109.47228 * 239.99704 * 2 1 3 27 27 H 1.09000 * 109.47060 * 120.00129 * 2 1 3 28 28 H 0.96996 * 119.99627 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99965 * 328.24096 * 13 3 2 30 30 H 1.08999 * 109.46453 * 299.14151 * 16 14 13 31 31 H 1.09001 * 109.46160 * 59.10643 * 16 14 13 32 32 H 1.00900 * 110.96404 * 62.41805 * 17 16 14 33 33 H 1.08996 * 109.46202 * 301.70806 * 18 17 16 34 34 H 1.09007 * 109.45237 * 181.73513 * 18 17 16 35 35 H 1.08994 * 109.46812 * 179.79915 * 21 19 18 36 36 H 1.08996 * 109.46865 * 299.80397 * 21 19 18 37 37 H 1.08995 * 109.46916 * 59.80394 * 21 19 18 38 38 H 1.08998 * 109.52235 * 302.30994 * 22 14 13 39 39 H 1.08999 * 109.52012 * 62.44063 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9846 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1541 1.8864 0.6316 7 6 4.1301 0.8830 -1.2522 8 7 3.3830 0.3455 -2.1918 9 14 5.9901 0.8863 -1.4257 10 1 6.5464 -0.3474 -0.8146 11 1 6.3528 0.9329 -2.8651 12 1 6.5494 2.0763 -0.7356 13 7 1.6647 2.0945 1.2617 14 6 1.6006 3.5534 1.1017 15 1 2.3588 3.8748 0.3876 16 6 0.2146 3.9507 0.5887 17 7 0.1428 5.4108 0.4495 18 6 0.3348 6.0784 1.7432 19 6 1.7247 5.7446 2.2897 20 1 2.4845 6.1011 1.5942 21 6 1.9160 6.4227 3.6479 22 6 1.8527 4.2275 2.4532 23 1 -0.3633 0.4133 0.9410 24 1 -0.3634 0.6084 -0.8282 25 1 -0.3634 -1.0214 -0.1127 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.7979 -0.0493 -2.9746 29 1 0.7910 1.7303 1.6111 30 1 0.0384 3.4837 -0.3804 31 1 -0.5441 3.6161 1.2961 32 1 0.8104 5.7418 -0.2309 33 1 -0.4240 5.7340 2.4458 34 1 0.2455 7.1568 1.6120 35 1 2.9047 6.1816 4.0382 36 1 1.8248 7.5025 3.5309 37 1 1.1547 6.0668 4.3420 38 1 1.1185 3.8761 3.1781 39 1 2.8556 3.9811 2.8017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401652922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:10 Heat of formation + Delta-G solvation = -21.712393 kcal Electronic energy + Delta-G solvation = -16651.787712 eV Core-core repulsion = 14206.995647 eV Total energy + Delta-G solvation = -2444.792065 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.98316 -35.93062 -32.93169 -32.44576 -31.31801 -28.30246 -26.34208 -25.98725 -23.12705 -22.71697 -20.73037 -20.05760 -19.34245 -16.22241 -15.62342 -15.05318 -15.01470 -14.66484 -14.08144 -13.78117 -13.29301 -12.69116 -12.65888 -12.34086 -11.99744 -11.82215 -11.71097 -11.61840 -11.18001 -10.89804 -10.89278 -10.75084 -10.61606 -10.37430 -10.22104 -9.95825 -9.68515 -9.43360 -9.19399 -8.38698 -8.26918 -7.04481 -5.96451 -4.00681 3.31884 3.38351 3.42081 4.43625 4.53561 4.88771 5.01611 5.20269 5.31558 5.41691 5.54067 5.60490 5.68068 5.78273 5.88155 5.96524 6.00389 6.13730 6.16746 6.17986 6.23501 6.36779 6.39251 6.46079 6.67029 6.77442 6.85956 7.10171 7.18086 7.21276 7.54092 7.58269 7.79101 7.92662 8.32894 8.40921 8.77948 9.07511 9.64368 11.08634 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.008194 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.479931 B = 3416.380120 C = 4034.949364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.679 5.679 14 C 0.062 3.938 15 H 0.079 0.921 16 C 0.030 3.970 17 N -0.687 5.687 18 C 0.064 3.936 19 C -0.131 4.131 20 H 0.067 0.933 21 C -0.140 4.140 22 C -0.099 4.099 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.040 0.960 28 H 0.259 0.741 29 H 0.317 0.683 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.340 0.660 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 8.187 6.885 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.310 5.310 14 C -0.051 4.051 15 H 0.098 0.902 16 C -0.101 4.101 17 N -0.315 5.315 18 C -0.066 4.066 19 C -0.152 4.152 20 H 0.086 0.914 21 C -0.198 4.198 22 C -0.137 4.137 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.229 8.099 6.964 11.892 hybrid contribution 1.194 -0.171 -0.540 1.322 sum -4.034 7.928 6.424 10.973 Atomic orbital electron populations 1.21878 0.99571 0.99721 0.99511 1.21764 0.91250 1.00429 1.03002 1.19166 0.95307 0.89923 0.84374 0.98034 1.21215 0.91366 1.36446 1.04125 0.92241 1.24957 0.98012 0.95703 0.95879 1.69874 1.34612 1.39545 1.09552 0.86569 0.85921 0.78378 0.76937 1.20770 1.21420 1.20075 1.60718 1.35347 1.01740 1.33163 1.22158 0.96147 0.90477 0.96280 0.90246 1.22839 0.97782 0.87766 1.01717 1.60675 1.56021 1.05736 1.09023 1.22061 0.95103 0.98359 0.91096 1.21932 0.98783 0.96846 0.97661 0.91417 1.21727 1.01625 0.99722 0.96762 1.21604 1.02093 0.92347 0.97695 0.94640 0.93872 0.94425 0.88310 0.94130 0.93100 0.86593 0.90882 0.91777 0.84323 0.91391 0.91394 0.92775 0.93065 0.92862 0.92711 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.16 0.36 -2.52 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.22 5.37 1.85 -68.86 -0.13 5.24 16 4 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 5 C -0.49 -13.53 8.46 -34.44 -0.29 -13.82 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.43 11.29 55.43 0.63 -24.81 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -14.13 6.05 -100.87 -0.61 -14.74 16 14 C 0.06 1.13 2.42 -67.63 -0.16 0.97 16 15 H 0.08 1.68 7.60 -51.93 -0.39 1.29 16 16 C 0.03 0.49 5.80 -3.83 -0.02 0.47 16 17 N -0.69 -9.99 6.87 -113.82 -0.78 -10.77 16 18 C 0.06 0.80 5.84 -3.84 -0.02 0.78 16 19 C -0.13 -1.72 2.87 -90.54 -0.26 -1.98 16 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.14 -1.54 9.20 37.16 0.34 -1.20 16 22 C -0.10 -1.56 4.90 -26.61 -0.13 -1.69 16 23 H 0.03 0.61 6.68 -51.93 -0.35 0.26 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.32 6.09 6.33 -39.29 -0.25 5.84 16 30 H 0.07 1.33 7.51 -51.93 -0.39 0.94 16 31 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.34 4.83 8.86 -39.29 -0.35 4.48 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -27.55 300.57 -8.84 -36.39 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.03 Total: 8.29 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -0.55 Total: -15.43 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.77 Total: -50.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.55 -8.84 -36.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401652922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.677 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds