Wall clock time and date at job start Mon Mar 30 2020 03:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 H 1.08994 * 109.47193 * 305.63942 * 3 2 1 5 5 C 1.50706 * 109.46777 * 185.64118 * 3 2 1 6 6 H 1.07998 * 120.00462 * 240.00194 * 5 3 2 7 7 C 1.37878 * 119.99835 * 59.99958 * 5 3 2 8 8 N 1.31520 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99982 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46855 * 90.00568 * 9 7 5 11 11 H 1.48510 * 109.46981 * 210.00452 * 9 7 5 12 12 H 1.48498 * 109.46959 * 330.00084 * 9 7 5 13 13 N 1.46898 * 109.47137 * 65.64732 * 3 2 1 14 14 C 1.46900 * 110.99994 * 204.28527 * 13 3 2 15 15 H 1.09001 * 109.49982 * 325.94854 * 14 13 3 16 16 C 1.53035 * 109.50248 * 86.02281 * 14 13 3 17 17 N 1.46849 * 109.52201 * 179.07984 * 16 14 13 18 18 C 1.46847 * 111.23196 * 298.31885 * 17 16 14 19 19 C 1.53034 * 109.52405 * 61.72542 * 18 17 16 20 20 H 1.09001 * 109.50219 * 60.75837 * 19 18 17 21 21 C 1.53001 * 109.50532 * 180.87742 * 19 18 17 22 22 C 1.53121 * 109.50488 * 205.86702 * 14 13 3 23 23 H 1.09006 * 109.46953 * 293.70958 * 1 2 3 24 24 H 1.08999 * 109.47297 * 53.70155 * 1 2 3 25 25 H 1.08999 * 109.47745 * 173.70623 * 1 2 3 26 26 H 1.08997 * 109.47228 * 239.99704 * 2 1 3 27 27 H 1.09000 * 109.47060 * 120.00129 * 2 1 3 28 28 H 0.96996 * 119.99627 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99965 * 328.24096 * 13 3 2 30 30 H 1.08999 * 109.46453 * 299.14151 * 16 14 13 31 31 H 1.09001 * 109.46160 * 59.10643 * 16 14 13 32 32 H 1.00900 * 110.96404 * 62.41805 * 17 16 14 33 33 H 1.08996 * 109.46202 * 301.70806 * 18 17 16 34 34 H 1.09007 * 109.45237 * 181.73513 * 18 17 16 35 35 H 1.08994 * 109.46812 * 179.79915 * 21 19 18 36 36 H 1.08996 * 109.46865 * 299.80397 * 21 19 18 37 37 H 1.08995 * 109.46916 * 59.80394 * 21 19 18 38 38 H 1.08998 * 109.52235 * 302.30994 * 22 14 13 39 39 H 1.08999 * 109.52012 * 62.44063 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5965 1.9846 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1541 1.8864 0.6316 7 6 4.1301 0.8830 -1.2522 8 7 3.3830 0.3455 -2.1918 9 14 5.9901 0.8863 -1.4257 10 1 6.5464 -0.3474 -0.8146 11 1 6.3528 0.9329 -2.8651 12 1 6.5494 2.0763 -0.7356 13 7 1.6647 2.0945 1.2617 14 6 1.6006 3.5534 1.1017 15 1 2.3588 3.8748 0.3876 16 6 0.2146 3.9507 0.5887 17 7 0.1428 5.4108 0.4495 18 6 0.3348 6.0784 1.7432 19 6 1.7247 5.7446 2.2897 20 1 2.4845 6.1011 1.5942 21 6 1.9160 6.4227 3.6479 22 6 1.8527 4.2275 2.4532 23 1 -0.3633 0.4133 0.9410 24 1 -0.3634 0.6084 -0.8282 25 1 -0.3634 -1.0214 -0.1127 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.7979 -0.0493 -2.9746 29 1 0.7910 1.7303 1.6111 30 1 0.0384 3.4837 -0.3804 31 1 -0.5441 3.6161 1.2961 32 1 0.8104 5.7418 -0.2309 33 1 -0.4240 5.7340 2.4458 34 1 0.2455 7.1568 1.6120 35 1 2.9047 6.1816 4.0382 36 1 1.8248 7.5025 3.5309 37 1 1.1547 6.0668 4.3420 38 1 1.1185 3.8761 3.1781 39 1 2.8556 3.9811 2.8017 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401652922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:09 Heat of formation + Delta-G solvation = -40.699261 kcal Electronic energy + Delta-G solvation = -16652.611044 eV Core-core repulsion = 14206.995647 eV Total energy + Delta-G solvation = -2445.615397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30804 -37.63251 -34.54560 -33.84555 -33.06689 -29.89924 -27.93252 -27.36201 -24.76060 -24.15605 -22.08090 -21.66099 -20.87290 -18.32057 -16.92263 -16.80257 -16.39659 -16.08168 -15.77581 -15.04622 -14.93274 -14.42441 -14.09345 -13.63352 -13.46160 -13.20796 -13.04062 -12.95005 -12.77782 -12.62372 -12.55196 -12.18088 -12.03574 -11.96215 -11.82542 -11.54423 -11.51461 -11.14665 -10.99680 -10.44757 -9.72138 -8.67466 -8.07675 -6.20266 1.38233 1.39193 1.49100 2.41525 3.15928 3.30008 3.62512 3.88473 4.02647 4.09577 4.22558 4.35638 4.50669 4.56814 4.58483 4.62020 4.70729 4.74029 4.80069 4.91591 5.03033 5.07730 5.13558 5.18340 5.24232 5.30919 5.36274 5.38733 5.49568 5.60799 5.74063 5.89340 6.02112 6.36347 6.39807 6.54136 6.93938 7.02279 7.48903 8.94544 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.008194 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.479931 B = 3416.380120 C = 4034.949364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.029 1.029 5 C -0.512 4.512 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.064 3.936 15 H 0.042 0.958 16 C 0.044 3.956 17 N -0.687 5.687 18 C 0.066 3.934 19 C -0.125 4.125 20 H 0.057 0.943 21 C -0.135 4.135 22 C -0.092 4.092 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.340 0.660 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 9.224 8.172 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.121 3.879 4 H -0.012 1.012 5 C -0.550 4.550 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.048 4.048 15 H 0.060 0.940 16 C -0.087 4.087 17 N -0.314 5.314 18 C -0.063 4.063 19 C -0.146 4.146 20 H 0.076 0.924 21 C -0.193 4.193 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.907 9.151 8.268 13.674 hybrid contribution 1.400 -0.464 -0.931 1.744 sum -4.507 8.686 7.337 12.231 Atomic orbital electron populations 1.21736 0.96155 1.01085 1.00522 1.21597 0.94326 0.99091 1.01050 1.18889 0.93667 0.90528 0.84842 1.01185 1.21464 0.93050 1.36531 1.03993 0.93745 1.25658 1.02128 0.95404 0.95619 1.69998 1.36118 1.39911 1.09829 0.85640 0.81023 0.78401 0.77042 1.20180 1.20798 1.19896 1.60629 1.36190 1.03260 1.31207 1.22151 0.96421 0.89056 0.97168 0.93954 1.22586 0.96493 0.89121 1.00548 1.60696 1.56044 1.04395 1.10311 1.22159 0.94707 0.99482 0.89994 1.21876 0.98985 0.94726 0.99040 0.92445 1.21682 1.01741 1.00670 0.95209 1.21529 1.01222 0.94311 0.95935 0.92310 0.94476 0.92513 0.91524 0.94676 0.93063 0.85376 0.93194 0.90502 0.84288 0.90592 0.89098 0.93177 0.91169 0.91930 0.91601 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.63 71.98 0.69 -4.48 16 2 C -0.12 -5.81 5.37 30.59 0.16 -5.64 16 3 C 0.23 11.53 1.85 44.17 0.08 11.61 16 4 H -0.03 -1.64 7.20 -2.39 -0.02 -1.66 16 5 C -0.51 -28.95 8.46 25.60 0.22 -28.74 16 6 H 0.04 2.58 7.81 -2.91 -0.02 2.56 16 7 C 0.01 0.57 5.29 84.65 0.45 1.02 16 8 N -0.92 -53.35 11.29 21.45 0.24 -53.11 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.68 -28.64 6.05 -473.04 -2.86 -31.50 16 14 C 0.06 2.37 2.42 44.97 0.11 2.48 16 15 H 0.04 1.87 7.60 -2.39 -0.02 1.85 16 16 C 0.04 1.43 5.80 86.32 0.50 1.93 16 17 N -0.69 -19.02 6.87 -514.01 -3.53 -22.55 16 18 C 0.07 1.48 5.84 86.32 0.50 1.99 16 19 C -0.13 -3.05 2.87 -10.74 -0.03 -3.08 16 20 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.14 -2.58 9.20 71.98 0.66 -1.92 16 22 C -0.09 -2.81 4.90 30.68 0.15 -2.66 16 23 H 0.06 1.92 6.68 -2.38 -0.02 1.90 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 3.62 5.94 -2.39 -0.01 3.60 16 27 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.33 12.33 6.33 -89.69 -0.57 11.76 16 30 H 0.05 1.84 7.51 -2.39 -0.02 1.83 16 31 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 32 H 0.34 9.46 8.86 -89.69 -0.79 8.67 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -60.29 300.57 -0.97 -61.26 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.35 Total: 26.52 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 3.50 Total: -27.50 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -6.15 Total: -107.16 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -60.29 -0.97 -61.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401652922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.562 kcal (2) G-P(sol) polarization free energy of solvation -60.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds