Wall clock time and date at job start Mon Mar 30 2020 03:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 H 1.08992 * 109.46998 * 304.16519 * 3 2 1 5 5 C 1.50701 * 109.46851 * 184.16318 * 3 2 1 6 6 H 1.07994 * 120.00276 * 239.99995 * 5 3 2 7 7 C 1.37881 * 119.99359 * 60.00175 * 5 3 2 8 8 N 1.31506 * 120.00652 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99550 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46811 * 89.99981 * 9 7 5 11 11 H 1.48496 * 109.47139 * 209.99835 * 9 7 5 12 12 H 1.48508 * 109.47438 * 330.00221 * 9 7 5 13 13 N 1.46893 * 109.47107 * 64.16778 * 3 2 1 14 14 C 1.46902 * 110.99821 * 205.78789 * 13 3 2 15 15 H 1.09001 * 112.84848 * 313.71301 * 14 13 3 16 16 C 1.53780 * 113.61876 * 84.91288 * 14 13 3 17 17 C 1.53779 * 87.08273 * 140.06523 * 16 14 13 18 18 H 1.08998 * 113.61503 * 89.11598 * 17 16 14 19 19 N 1.46901 * 113.61186 * 219.93591 * 17 16 14 20 20 C 1.53777 * 87.08241 * 334.56544 * 17 16 14 21 21 C 1.52998 * 113.61918 * 270.88579 * 20 17 16 22 22 C 1.53006 * 113.61424 * 139.97969 * 20 17 16 23 23 H 1.09004 * 109.46742 * 296.78059 * 1 2 3 24 24 H 1.08990 * 109.47073 * 56.77769 * 1 2 3 25 25 H 1.08995 * 109.46779 * 176.78160 * 1 2 3 26 26 H 1.08998 * 109.47276 * 239.99920 * 2 1 3 27 27 H 1.09002 * 109.46948 * 119.99905 * 2 1 3 28 28 H 0.97003 * 120.00265 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00354 * 81.83061 * 13 3 2 30 30 H 1.08996 * 113.61186 * 254.61903 * 16 14 13 31 31 H 1.08998 * 113.61233 * 25.43066 * 16 14 13 32 32 H 1.00904 * 111.00137 * 280.49533 * 19 17 16 33 33 H 1.00898 * 111.00431 * 44.44956 * 19 17 16 34 34 H 1.09000 * 109.47554 * 157.49915 * 21 20 17 35 35 H 1.09000 * 109.47067 * 277.49734 * 21 20 17 36 36 H 1.08995 * 109.46840 * 37.49460 * 21 20 17 37 37 H 1.08997 * 109.46680 * 322.50717 * 22 20 17 38 38 H 1.08997 * 109.46725 * 82.50744 * 22 20 17 39 39 H 1.08995 * 109.46954 * 202.50627 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6170 1.9774 -0.8503 5 6 3.5435 1.4438 -0.1031 6 1 4.1381 1.8921 0.6790 7 6 4.1599 0.8725 -1.1962 8 7 3.4359 0.3261 -2.1485 9 14 6.0235 0.8746 -1.3245 10 1 6.5647 -0.3538 -0.6894 11 1 6.4212 0.9088 -2.7548 12 1 6.5661 2.0706 -0.6311 13 7 1.6343 2.1053 1.2465 14 6 1.5397 3.5597 1.0628 15 1 2.3980 3.9764 0.5356 16 6 0.1861 4.0228 0.4987 17 6 0.2753 5.2097 1.4723 18 1 0.7878 6.0775 1.0572 19 7 -1.0071 5.5519 2.1020 20 6 1.1761 4.3226 2.3477 21 6 0.4041 3.4786 3.3638 22 6 2.3559 5.0722 2.9700 23 1 -0.3633 0.4631 0.9175 24 1 -0.3633 0.5630 -0.8596 25 1 -0.3633 -1.0260 -0.0577 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8696 -0.0761 -2.9173 29 1 2.2652 1.8763 1.9999 30 1 0.2272 4.3147 -0.5506 31 1 -0.6344 3.3388 0.7159 32 1 -1.5845 6.0929 1.4758 33 1 -1.4899 4.7223 2.4132 34 1 1.0076 2.6191 3.6556 35 1 0.1823 4.0824 4.2438 36 1 -0.5277 3.1332 2.9159 37 1 2.7401 5.8012 2.2565 38 1 2.0245 5.5864 3.8721 39 1 3.1434 4.3630 3.2245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405434687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:00 Heat of formation + Delta-G solvation = 1.916479 kcal Electronic energy + Delta-G solvation = -16811.561052 eV Core-core repulsion = 14367.793613 eV Total energy + Delta-G solvation = -2443.767440 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.71869 -35.48019 -32.43130 -31.63730 -30.55056 -29.15409 -27.10328 -26.05044 -23.02706 -22.11732 -21.41236 -19.34155 -17.74472 -16.64221 -15.80967 -15.16844 -14.76923 -14.33463 -13.83565 -13.37756 -12.91568 -12.82136 -12.52066 -12.23748 -11.82492 -11.74592 -11.64758 -11.30625 -11.22645 -11.12584 -10.95027 -10.68243 -10.43979 -10.13040 -10.07166 -9.65380 -9.51723 -9.23654 -9.02451 -8.37130 -8.33798 -7.23190 -5.98892 -4.11858 3.26246 3.33535 3.36043 4.39412 4.70201 4.89261 5.06073 5.17642 5.25800 5.38191 5.64615 5.73089 5.88405 6.03871 6.08546 6.20299 6.23785 6.34710 6.38152 6.40638 6.46180 6.50701 6.59567 6.71357 6.86222 6.92398 7.15609 7.18048 7.33814 7.47887 7.62337 7.64015 7.79068 8.11207 8.18532 8.37915 8.70818 9.02328 9.55859 11.00915 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028724 B = 0.008352 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.559457 B = 3351.771881 C = 3850.267573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.672 5.672 14 C 0.083 3.917 15 H 0.061 0.939 16 C -0.161 4.161 17 C 0.075 3.925 18 H 0.094 0.906 19 N -0.839 5.839 20 C -0.076 4.076 21 C -0.104 4.104 22 C -0.132 4.132 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.023 0.977 26 H 0.089 0.911 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.326 0.674 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.334 0.666 33 H 0.341 0.659 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 6.582 6.686 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.302 5.302 14 C -0.029 4.029 15 H 0.078 0.922 16 C -0.202 4.202 17 C -0.037 4.037 18 H 0.112 0.888 19 N -0.367 5.367 20 C -0.077 4.077 21 C -0.162 4.162 22 C -0.190 4.190 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.254 6.784 6.937 11.544 hybrid contribution 1.718 -0.407 -1.177 2.122 sum -4.536 6.377 5.759 9.717 Atomic orbital electron populations 1.21679 0.99119 0.98141 1.00251 1.21490 0.91977 0.99400 1.01555 1.19099 0.92440 0.90979 0.86663 0.95143 1.21895 0.92848 1.37821 1.05759 0.92948 1.24932 0.97860 0.95068 0.95675 1.69876 1.34824 1.38076 1.09595 0.86681 0.86254 0.78379 0.77176 1.20658 1.21242 1.20106 1.61039 1.54733 1.05044 1.09366 1.22648 0.95581 0.90210 0.94451 0.92160 1.23757 0.99606 0.98056 0.98761 1.22906 0.91043 0.95489 0.94249 0.88787 1.58740 1.06743 1.26754 1.44464 1.22097 0.95224 0.95370 0.95033 1.21221 0.99543 0.98533 0.96869 1.21695 0.97475 0.99587 1.00203 0.93461 0.94638 0.95806 0.89324 0.95198 0.92942 0.85670 0.92626 0.89929 0.85423 0.84480 0.92229 0.93512 0.92836 0.93099 0.93005 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.75 37.16 0.36 -2.40 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.26 1.96 -68.87 -0.13 5.12 16 4 H 0.03 0.83 7.76 -51.93 -0.40 0.43 16 5 C -0.54 -14.57 8.42 -34.44 -0.29 -14.86 16 6 H 0.05 1.40 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.03 11.29 55.43 0.63 -24.41 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.67 -13.58 4.76 -100.10 -0.48 -14.06 16 14 C 0.08 1.50 3.11 -66.90 -0.21 1.30 16 15 H 0.06 1.25 7.99 -51.93 -0.41 0.84 16 16 C -0.16 -2.63 7.13 -25.92 -0.18 -2.82 16 17 C 0.08 1.06 4.48 -66.90 -0.30 0.76 16 18 H 0.09 1.31 7.96 -51.93 -0.41 0.90 16 19 N -0.84 -10.11 9.33 -3.98 -0.04 -10.15 16 20 C -0.08 -1.14 1.32 -153.69 -0.20 -1.34 16 21 C -0.10 -1.47 7.61 37.16 0.28 -1.19 16 22 C -0.13 -1.87 9.19 37.16 0.34 -1.53 16 23 H 0.05 0.92 7.82 -51.93 -0.41 0.51 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 2.37 5.97 -51.93 -0.31 2.06 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.33 6.68 7.93 -39.29 -0.31 6.37 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.37 7.59 -51.93 -0.39 0.98 16 32 H 0.33 3.46 9.08 -39.29 -0.36 3.11 16 33 H 0.34 4.00 6.99 -39.29 -0.27 3.72 16 34 H 0.06 0.88 7.39 -51.93 -0.38 0.50 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.75 6.19 -51.93 -0.32 0.43 16 37 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 303.59 15.07 4.57 4.57 Total: -1.00 -27.01 303.59 -7.81 -34.82 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.90 Total: 10.96 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.57 Total: -17.88 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.11 Total: -48.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.01 -7.81 -34.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405434687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.736 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds