Wall clock time and date at job start Mon Mar 30 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46894 * 2 1 4 4 H 1.08996 * 109.47000 * 305.06909 * 3 2 1 5 5 C 1.50699 * 109.46758 * 185.07281 * 3 2 1 6 6 H 1.08002 * 119.99927 * 240.49989 * 5 3 2 7 7 C 1.37873 * 120.00188 * 60.50273 * 5 3 2 8 8 N 1.31514 * 120.00187 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99976 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47378 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47447 * 119.99784 * 9 7 5 12 12 H 1.48502 * 109.47049 * 239.99717 * 9 7 5 13 13 N 1.46895 * 109.46802 * 65.07226 * 3 2 1 14 14 C 1.46851 * 110.99608 * 208.87746 * 13 3 2 15 15 C 1.53040 * 109.52304 * 174.16286 * 14 13 3 16 16 H 1.08993 * 109.53649 * 179.14101 * 15 14 13 17 17 N 1.46904 * 109.50234 * 299.23953 * 15 14 13 18 18 C 1.53118 * 109.28003 * 59.17643 * 15 14 13 19 19 C 1.53124 * 109.16316 * 302.34929 * 18 15 14 20 20 C 1.46846 * 111.00260 * 84.67233 * 13 3 2 21 21 H 1.08997 * 109.45436 * 65.81922 * 20 13 3 22 22 C 1.53003 * 109.45692 * 305.85072 * 20 13 3 23 23 H 1.08998 * 109.47185 * 304.84161 * 1 2 3 24 24 H 1.09002 * 109.46925 * 64.84346 * 1 2 3 25 25 H 1.08998 * 109.46939 * 184.84439 * 1 2 3 26 26 H 1.09004 * 109.46685 * 240.00209 * 2 1 3 27 27 H 1.08995 * 109.47068 * 120.00266 * 2 1 3 28 28 H 0.97000 * 120.00506 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46288 * 54.14624 * 14 13 3 30 30 H 1.09003 * 109.45341 * 294.16995 * 14 13 3 31 31 H 1.00901 * 111.00123 * 179.80162 * 17 15 14 32 32 H 1.00902 * 110.99832 * 303.75764 * 17 15 14 33 33 H 1.08991 * 109.52928 * 182.44006 * 18 15 14 34 34 H 1.09005 * 109.57217 * 62.28195 * 18 15 14 35 35 H 1.08999 * 109.50154 * 297.71287 * 19 18 15 36 36 H 1.08998 * 109.50361 * 177.58796 * 19 18 15 37 37 H 1.08997 * 109.47616 * 309.23759 * 22 20 13 38 38 H 1.09004 * 109.46951 * 189.23820 * 22 20 13 39 39 H 1.08997 * 109.47280 * 69.24641 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6044 1.9819 -0.8411 5 6 3.5418 1.4444 -0.1256 6 1 4.1483 1.8814 0.6538 7 6 4.1414 0.8882 -1.2356 8 7 3.4029 0.3556 -2.1845 9 14 6.0029 0.8899 -1.3909 10 1 6.5987 1.5437 -0.1981 11 1 6.4930 -0.5087 -1.4858 12 1 6.3970 1.6364 -2.6127 13 7 1.6528 2.0987 1.2559 14 6 1.4843 3.5448 1.0639 15 6 0.9422 4.1718 2.3504 16 1 0.8315 5.2474 2.2131 17 7 -0.3640 3.5813 2.6713 18 6 1.9210 3.9008 3.4963 19 6 2.1163 2.3893 3.6437 20 6 2.6243 1.8140 2.3197 21 1 3.5817 2.2707 2.0688 22 6 2.8017 0.3005 2.4562 23 1 -0.3633 0.5871 0.8434 24 1 -0.3633 0.4369 -0.9302 25 1 -0.3633 -1.0240 0.0868 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8247 -0.0354 -2.9656 29 1 0.7828 3.7237 0.2491 30 1 2.4472 3.9932 0.8191 31 1 -0.7414 3.9771 3.5192 32 1 -1.0088 3.6906 1.9029 33 1 1.5182 4.3082 4.4236 34 1 2.8792 4.3722 3.2773 35 1 1.1655 1.9230 3.9021 36 1 2.8449 2.1914 4.4299 37 1 1.8241 -0.1736 2.5432 38 1 3.3916 0.0826 3.3466 39 1 3.3160 -0.0859 1.5763 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690993406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:21 Heat of formation + Delta-G solvation = 8.504007 kcal Electronic energy + Delta-G solvation = -17473.002161 eV Core-core repulsion = 15029.520377 eV Total energy + Delta-G solvation = -2443.481783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.91285 -35.39951 -32.75598 -31.64535 -30.67625 -29.21244 -26.58045 -25.52171 -23.47965 -22.12580 -20.55116 -19.23783 -18.55693 -16.19613 -15.34694 -15.18743 -14.71670 -14.19539 -13.89456 -13.46077 -13.09344 -12.50940 -12.33373 -11.88242 -11.74976 -11.66395 -11.21433 -11.11965 -11.05884 -10.76542 -10.68464 -10.54499 -10.26077 -9.78733 -9.70324 -9.58245 -9.30472 -9.19616 -8.68900 -8.16561 -8.10222 -6.83821 -5.91782 -4.03341 3.27982 3.37057 3.40053 4.43784 4.85639 5.21669 5.27347 5.33092 5.40409 5.64346 5.90068 6.05908 6.10645 6.34894 6.40604 6.42723 6.47363 6.56414 6.56962 6.63686 6.68580 6.82534 6.86414 6.89684 7.24538 7.27318 7.35982 7.40637 7.57474 7.63480 7.79327 7.86954 7.90883 8.18459 8.26170 8.50245 8.70942 9.09213 9.62616 11.07045 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.010429 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.118347 B = 2684.071365 C = 3009.302107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.214 3.786 4 H 0.027 0.973 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.508 5.508 14 C 0.070 3.930 15 C 0.096 3.904 16 H 0.021 0.979 17 N -0.822 5.822 18 C -0.110 4.110 19 C -0.105 4.105 20 C 0.097 3.903 21 H 0.040 0.960 22 C -0.145 4.145 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.020 0.980 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.258 0.742 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.325 0.675 32 H 0.337 0.663 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.028 0.972 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 4.740 8.335 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.108 3.892 4 H 0.045 0.955 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.233 5.233 14 C -0.060 4.060 15 C -0.016 4.016 16 H 0.039 0.961 17 N -0.352 5.352 18 C -0.148 4.148 19 C -0.143 4.143 20 C -0.012 4.012 21 H 0.057 0.943 22 C -0.201 4.201 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.206 3.764 8.343 10.073 hybrid contribution 1.501 1.397 -0.670 2.158 sum -2.705 5.162 7.673 9.635 Atomic orbital electron populations 1.21709 0.99294 0.98256 1.00319 1.22017 0.92198 0.99366 1.02808 1.19233 0.92923 0.91590 0.85490 0.95536 1.21922 0.93074 1.38031 1.04795 0.91829 1.24920 0.97452 0.95381 0.95802 1.69915 1.34481 1.38921 1.09000 0.86700 0.86706 0.77683 0.77882 1.19950 1.21046 1.21237 1.62262 1.46057 1.06745 1.08205 1.21890 0.98452 0.91097 0.94537 1.21394 0.90268 0.93786 0.96160 0.96096 1.58488 1.04293 1.64976 1.07430 1.21558 0.98158 0.98041 0.97044 1.21578 1.01229 0.94244 0.97240 1.21312 0.93830 0.95692 0.90331 0.94270 1.22192 1.00887 0.95894 1.01174 0.92562 0.95118 0.96068 0.89894 0.92406 0.93145 0.92332 0.95216 0.86348 0.85028 0.93284 0.92599 0.90687 0.93721 0.92711 0.95292 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.86 37.16 0.37 -2.55 16 2 C -0.13 -2.99 4.93 -26.72 -0.13 -3.12 16 3 C 0.21 5.22 1.64 -68.86 -0.11 5.11 16 4 H 0.03 0.73 7.64 -51.93 -0.40 0.33 16 5 C -0.54 -14.15 6.28 -34.44 -0.22 -14.37 16 6 H 0.06 1.69 5.24 -52.49 -0.28 1.41 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.88 11.33 55.43 0.63 -24.26 16 9 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.51 -10.56 3.63 -220.14 -0.80 -11.36 16 14 C 0.07 1.33 4.92 -3.83 -0.02 1.31 16 15 C 0.10 1.47 3.60 -67.63 -0.24 1.22 16 16 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 17 N -0.82 -11.51 8.46 -4.60 -0.04 -11.55 16 18 C -0.11 -1.66 5.67 -26.61 -0.15 -1.81 16 19 C -0.10 -1.76 5.19 -26.65 -0.14 -1.90 16 20 C 0.10 1.94 1.82 -67.72 -0.12 1.81 16 21 H 0.04 0.88 5.89 -51.93 -0.31 0.57 16 22 C -0.14 -2.89 7.33 37.16 0.27 -2.61 16 23 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 2.22 5.99 -51.93 -0.31 1.91 16 27 H 0.06 1.34 3.73 -51.93 -0.19 1.15 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.06 1.12 7.90 -51.93 -0.41 0.71 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.33 3.80 9.04 -39.29 -0.36 3.45 16 32 H 0.34 4.51 9.00 -39.29 -0.35 4.15 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 1.09 7.04 -51.93 -0.37 0.72 16 38 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 39 H 0.09 2.02 4.87 -51.93 -0.25 1.76 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -27.18 285.93 -8.05 -35.22 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.53 Total: 6.77 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.59 Total: -15.21 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.21 Total: -47.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.18 -8.05 -35.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690993406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.727 kcal (2) G-P(sol) polarization free energy of solvation -27.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds