Wall clock time and date at job start Mon Mar 30 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46894 * 2 1 4 4 H 1.08996 * 109.47000 * 305.06909 * 3 2 1 5 5 C 1.50699 * 109.46758 * 185.07281 * 3 2 1 6 6 H 1.08002 * 119.99927 * 240.49989 * 5 3 2 7 7 C 1.37873 * 120.00188 * 60.50273 * 5 3 2 8 8 N 1.31514 * 120.00187 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99976 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47378 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47447 * 119.99784 * 9 7 5 12 12 H 1.48502 * 109.47049 * 239.99717 * 9 7 5 13 13 N 1.46895 * 109.46802 * 65.07226 * 3 2 1 14 14 C 1.46851 * 110.99608 * 208.87746 * 13 3 2 15 15 C 1.53040 * 109.52304 * 174.16286 * 14 13 3 16 16 H 1.08993 * 109.53649 * 179.14101 * 15 14 13 17 17 N 1.46904 * 109.50234 * 299.23953 * 15 14 13 18 18 C 1.53118 * 109.28003 * 59.17643 * 15 14 13 19 19 C 1.53124 * 109.16316 * 302.34929 * 18 15 14 20 20 C 1.46846 * 111.00260 * 84.67233 * 13 3 2 21 21 H 1.08997 * 109.45436 * 65.81922 * 20 13 3 22 22 C 1.53003 * 109.45692 * 305.85072 * 20 13 3 23 23 H 1.08998 * 109.47185 * 304.84161 * 1 2 3 24 24 H 1.09002 * 109.46925 * 64.84346 * 1 2 3 25 25 H 1.08998 * 109.46939 * 184.84439 * 1 2 3 26 26 H 1.09004 * 109.46685 * 240.00209 * 2 1 3 27 27 H 1.08995 * 109.47068 * 120.00266 * 2 1 3 28 28 H 0.97000 * 120.00506 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.46288 * 54.14624 * 14 13 3 30 30 H 1.09003 * 109.45341 * 294.16995 * 14 13 3 31 31 H 1.00901 * 111.00123 * 179.80162 * 17 15 14 32 32 H 1.00902 * 110.99832 * 303.75764 * 17 15 14 33 33 H 1.08991 * 109.52928 * 182.44006 * 18 15 14 34 34 H 1.09005 * 109.57217 * 62.28195 * 18 15 14 35 35 H 1.08999 * 109.50154 * 297.71287 * 19 18 15 36 36 H 1.08998 * 109.50361 * 177.58796 * 19 18 15 37 37 H 1.08997 * 109.47616 * 309.23759 * 22 20 13 38 38 H 1.09004 * 109.46951 * 189.23820 * 22 20 13 39 39 H 1.08997 * 109.47280 * 69.24641 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6044 1.9819 -0.8411 5 6 3.5418 1.4444 -0.1256 6 1 4.1483 1.8814 0.6538 7 6 4.1414 0.8882 -1.2356 8 7 3.4029 0.3556 -2.1845 9 14 6.0029 0.8899 -1.3909 10 1 6.5987 1.5437 -0.1981 11 1 6.4930 -0.5087 -1.4858 12 1 6.3970 1.6364 -2.6127 13 7 1.6528 2.0987 1.2559 14 6 1.4843 3.5448 1.0639 15 6 0.9422 4.1718 2.3504 16 1 0.8315 5.2474 2.2131 17 7 -0.3640 3.5813 2.6713 18 6 1.9210 3.9008 3.4963 19 6 2.1163 2.3893 3.6437 20 6 2.6243 1.8140 2.3197 21 1 3.5817 2.2707 2.0688 22 6 2.8017 0.3005 2.4562 23 1 -0.3633 0.5871 0.8434 24 1 -0.3633 0.4369 -0.9302 25 1 -0.3633 -1.0240 0.0868 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8247 -0.0354 -2.9656 29 1 0.7828 3.7237 0.2491 30 1 2.4472 3.9932 0.8191 31 1 -0.7414 3.9771 3.5192 32 1 -1.0088 3.6906 1.9029 33 1 1.5182 4.3082 4.4236 34 1 2.8792 4.3722 3.2773 35 1 1.1655 1.9230 3.9021 36 1 2.8449 2.1914 4.4299 37 1 1.8241 -0.1736 2.5432 38 1 3.3916 0.0826 3.3466 39 1 3.3160 -0.0859 1.5763 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690993406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:21 Heat of formation + Delta-G solvation = -9.630480 kcal Electronic energy + Delta-G solvation = -17473.788531 eV Core-core repulsion = 15029.520377 eV Total energy + Delta-G solvation = -2444.268154 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48725 -36.97842 -34.43491 -33.44916 -32.35929 -30.57138 -28.47223 -27.04450 -25.28291 -23.68895 -22.13431 -21.08262 -20.04479 -18.13237 -17.03670 -16.46560 -16.30629 -15.84087 -15.33994 -15.11176 -14.85868 -14.20331 -13.90827 -13.47999 -13.32823 -13.16700 -13.01725 -12.86746 -12.70192 -12.62992 -12.44263 -12.11182 -11.94520 -11.48010 -11.32632 -11.23556 -11.13323 -10.96664 -10.57539 -10.14747 -9.22520 -8.65072 -7.95820 -6.16833 1.35233 1.38988 1.47838 2.42306 3.20647 3.45449 3.88316 3.97540 4.11914 4.32942 4.49151 4.62464 4.69706 4.74793 4.86695 4.89756 4.98238 5.00319 5.03644 5.09771 5.13395 5.19875 5.31423 5.32441 5.42976 5.54957 5.67589 5.68846 5.74518 5.83209 5.96060 6.24517 6.30954 6.47086 6.56156 6.89587 6.93970 7.09248 7.52588 8.97896 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028387 B = 0.010429 C = 0.009302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.118347 B = 2684.071365 C = 3009.302107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.222 3.778 4 H -0.013 1.013 5 C -0.540 4.540 6 H 0.059 0.941 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.500 5.500 14 C 0.066 3.934 15 C 0.105 3.895 16 H 0.041 0.959 17 N -0.828 5.828 18 C -0.108 4.108 19 C -0.096 4.096 20 C 0.094 3.906 21 H 0.013 0.987 22 C -0.138 4.138 23 H 0.062 0.938 24 H 0.021 0.979 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.258 0.742 29 H 0.049 0.951 30 H 0.007 0.993 31 H 0.343 0.657 32 H 0.341 0.659 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 5.354 10.485 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.114 3.886 4 H 0.005 0.995 5 C -0.579 4.579 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.224 5.224 14 C -0.063 4.063 15 C -0.007 4.007 16 H 0.059 0.941 17 N -0.360 5.360 18 C -0.146 4.146 19 C -0.134 4.134 20 C -0.014 4.014 21 H 0.031 0.969 22 C -0.195 4.195 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.564 4.391 10.518 12.277 hybrid contribution 1.595 1.221 -1.331 2.410 sum -2.968 5.612 9.186 11.166 Atomic orbital electron populations 1.21557 0.97090 0.99509 1.00080 1.21887 0.94100 0.98537 1.01415 1.19001 0.91711 0.91863 0.86008 0.99501 1.22142 0.94214 1.37147 1.04414 0.92333 1.25589 1.01213 0.95445 0.95771 1.70048 1.35897 1.39882 1.09444 0.85791 0.82241 0.77612 0.77703 1.19538 1.20734 1.21206 1.62269 1.45777 1.07721 1.06674 1.21976 0.97405 0.90062 0.96890 1.21233 0.90967 0.94427 0.94045 0.94143 1.58401 1.03863 1.65236 1.08495 1.21567 0.98102 0.96796 0.98176 1.21481 1.01379 0.95276 0.95219 1.21392 0.92547 0.95745 0.91762 0.96935 1.22059 1.00857 0.95804 1.00755 0.91931 0.95964 0.94148 0.93197 0.91791 0.93296 0.93221 0.97482 0.84329 0.84618 0.90226 0.92968 0.90748 0.91991 0.92590 0.92866 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 9.86 71.98 0.71 -4.51 16 2 C -0.12 -5.87 4.93 30.60 0.15 -5.72 16 3 C 0.22 11.10 1.64 44.17 0.07 11.18 16 4 H -0.01 -0.75 7.64 -2.39 -0.02 -0.76 16 5 C -0.54 -29.10 6.28 25.60 0.16 -28.93 16 6 H 0.06 3.18 5.24 -2.91 -0.02 3.16 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -52.94 11.33 21.45 0.24 -52.70 16 9 Si 0.94 44.08 29.54 68.60 2.03 46.11 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 N -0.50 -20.76 3.63 -850.39 -3.08 -23.84 16 14 C 0.07 2.50 4.92 86.33 0.42 2.93 16 15 C 0.11 2.96 3.60 44.97 0.16 3.13 16 16 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 17 N -0.83 -20.75 8.46 -168.46 -1.43 -22.18 16 18 C -0.11 -2.91 5.67 30.68 0.17 -2.74 16 19 C -0.10 -2.93 5.19 30.65 0.16 -2.77 16 20 C 0.09 3.67 1.82 44.94 0.08 3.76 16 21 H 0.01 0.57 5.89 -2.39 -0.01 0.56 16 22 C -0.14 -5.36 7.33 71.98 0.53 -4.83 16 23 H 0.06 2.52 7.63 -2.39 -0.02 2.50 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 2.76 5.99 -2.38 -0.01 2.74 16 27 H 0.06 2.99 3.73 -2.39 -0.01 2.98 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 30 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.34 6.69 9.04 -89.69 -0.81 5.88 16 32 H 0.34 8.29 9.00 -89.69 -0.81 7.49 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 2.33 7.72 -2.39 -0.02 2.31 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 2.14 7.04 -2.39 -0.02 2.13 16 38 H 0.05 1.78 8.12 -2.38 -0.02 1.76 16 39 H 0.06 2.56 4.87 -2.39 -0.01 2.55 16 Total: -1.00 -59.27 285.93 0.25 -59.02 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.58 Total: 20.60 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.07 Total: -27.02 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -4.27 Total: -98.71 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -59.27 0.25 -59.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690993406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.388 kcal (2) G-P(sol) polarization free energy of solvation -59.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds