Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 N 1.46900 * 109.47216 * 174.77518 * 3 2 1 5 5 C 1.46900 * 111.00152 * 198.87437 * 4 3 2 6 6 H 1.08998 * 109.47087 * 186.77520 * 5 4 3 7 7 C 1.53000 * 109.46878 * 306.78026 * 5 4 3 8 8 C 1.53002 * 109.46981 * 66.77900 * 5 4 3 9 9 C 1.50700 * 109.47275 * 64.38136 * 8 5 4 10 10 H 1.08000 * 119.99776 * 5.01197 * 9 8 5 11 11 C 1.37875 * 120.00129 * 185.01286 * 9 8 5 12 12 N 1.31515 * 119.99696 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99959 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46739 * 90.00192 * 13 11 9 15 15 H 1.48495 * 109.47141 * 209.99913 * 13 11 9 16 16 H 1.48498 * 109.47324 * 330.00241 * 13 11 9 17 17 C 1.46897 * 110.99794 * 74.92014 * 4 3 2 18 18 C 1.53520 * 114.17143 * 177.21444 * 17 4 3 19 19 N 1.47471 * 87.99846 * 139.69987 * 18 17 4 20 20 C 1.47480 * 87.83960 * 332.96225 * 19 18 17 21 21 H 1.09004 * 109.46990 * 299.99728 * 1 2 3 22 22 H 1.09005 * 109.47645 * 59.99798 * 1 2 3 23 23 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46737 * 240.00731 * 2 1 3 25 25 H 1.08997 * 109.47485 * 119.99916 * 2 1 3 26 26 H 1.09002 * 109.46970 * 54.77730 * 3 2 1 27 27 H 1.09002 * 109.47503 * 294.77897 * 3 2 1 28 28 H 1.09008 * 109.46691 * 179.97438 * 7 5 4 29 29 H 1.09004 * 109.47376 * 299.99469 * 7 5 4 30 30 H 1.08996 * 109.47574 * 60.00392 * 7 5 4 31 31 H 1.08997 * 109.46793 * 184.38308 * 8 5 4 32 32 H 1.09002 * 109.47002 * 304.38083 * 8 5 4 33 33 H 0.97004 * 119.99898 * 179.97438 * 12 11 9 34 34 H 1.09002 * 113.38599 * 44.13425 * 17 4 3 35 35 H 1.09003 * 113.47062 * 24.89961 * 18 17 4 36 36 H 1.09002 * 113.47532 * 254.50252 * 18 17 4 37 37 H 1.00904 * 111.00375 * 221.26443 * 19 18 17 38 38 H 1.08997 * 113.47901 * 141.77714 * 20 19 18 39 39 H 1.09003 * 113.47238 * 272.18492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5035 1.4445 0.1261 5 6 3.9916 2.7558 0.5737 6 1 5.0811 2.7676 0.5435 7 6 3.4438 3.8461 -0.3493 8 6 3.5183 3.0145 2.0055 9 6 4.1443 2.0040 2.9319 10 1 4.8746 1.3041 2.5533 11 6 3.7849 1.9730 4.2626 12 7 2.8953 2.8250 4.7233 13 14 4.5603 0.7199 5.4106 14 1 5.7901 1.2948 6.0126 15 1 3.5981 0.3726 6.4869 16 1 4.9094 -0.5036 4.6448 17 6 4.1412 1.0484 -1.1365 18 6 5.6755 1.0909 -1.1063 19 7 5.6740 -0.1632 -1.8822 20 6 4.3599 -0.4657 -1.2849 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8932 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6022 1.9826 0.8395 27 1 1.7550 1.9287 -0.9330 28 1 3.8056 4.8191 -0.0169 29 1 3.7809 3.6618 -1.3694 30 1 2.3543 3.8343 -0.3190 31 1 3.8138 4.0185 2.3100 32 1 2.4329 2.9257 2.0511 33 1 2.6420 2.8030 5.6595 34 1 3.6988 1.5233 -2.0123 35 1 6.0932 0.9819 -0.1054 36 1 6.0972 1.9369 -1.6491 37 1 6.3803 -0.7991 -1.5431 38 1 3.6658 -0.9388 -1.9794 39 1 4.4266 -0.9911 -0.3322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695827718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = 25.746184 kcal Electronic energy + Delta-G solvation = -16859.667060 eV Core-core repulsion = 14416.932954 eV Total energy + Delta-G solvation = -2442.734106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76066 -36.73926 -33.64123 -32.38926 -29.94804 -27.32016 -26.59426 -25.59682 -24.29901 -22.91649 -21.00980 -19.70376 -18.34294 -16.58606 -16.13197 -15.67512 -14.81917 -14.46419 -14.28996 -13.76345 -13.12871 -12.78116 -12.62582 -12.38709 -12.20270 -11.95733 -11.71762 -11.59808 -11.19478 -11.07126 -10.82407 -10.59371 -10.55801 -10.45370 -10.24202 -10.00022 -9.72485 -9.15605 -8.96764 -8.85043 -8.25967 -7.51924 -5.89419 -3.86877 3.37086 3.43728 3.47623 4.33443 4.54904 4.64106 4.76401 5.31814 5.44312 5.48348 5.50968 5.62692 5.67262 5.77520 5.83962 5.88535 5.90947 5.97404 6.01404 6.09531 6.19173 6.23642 6.26945 6.27405 6.42268 6.52015 6.63572 6.77203 6.80979 7.00144 7.38405 7.54473 7.69780 7.92784 8.04513 8.11595 8.56952 9.17615 9.74287 11.22546 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.009410 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.237644 B = 2974.850761 C = 3219.199356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.058 3.942 4 N -0.499 5.499 5 C 0.086 3.914 6 H 0.070 0.930 7 C -0.182 4.182 8 C 0.029 3.971 9 C -0.486 4.486 10 H 0.057 0.943 11 C 0.051 3.949 12 N -0.903 5.903 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.275 1.275 17 C 0.052 3.948 18 C 0.009 3.991 19 N -0.637 5.637 20 C 0.014 3.986 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.021 0.979 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.257 0.743 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.318 0.682 38 H 0.074 0.926 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.104 -3.890 -10.833 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.070 4.070 4 N -0.223 5.223 5 C -0.022 4.022 6 H 0.088 0.912 7 C -0.241 4.241 8 C -0.008 4.008 9 C -0.525 4.525 10 H 0.075 0.925 11 C -0.148 4.148 12 N -0.544 5.544 13 Si 0.716 3.284 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.200 1.200 17 C -0.058 4.058 18 C -0.121 4.121 19 N -0.261 5.261 20 C -0.116 4.116 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.163 -4.001 -11.170 11.866 hybrid contribution 0.298 -0.298 1.097 1.176 sum 0.134 -4.299 -10.072 10.952 Atomic orbital electron populations 1.21731 0.96534 1.00954 1.01478 1.21513 0.94517 0.97431 1.02116 1.22134 0.88305 0.96526 0.99991 1.62324 1.05108 1.29720 1.25109 1.21920 0.98829 0.84387 0.97027 0.91211 1.22538 1.01415 1.00921 0.99239 1.19220 0.97061 0.96489 0.88002 1.21093 1.22732 1.15947 0.92702 0.92499 1.24981 0.95507 0.95948 0.98359 1.69959 1.32757 1.37057 1.14610 0.86668 0.78908 0.82089 0.80724 1.21068 1.21559 1.20027 1.23234 0.94260 0.95731 0.92534 1.23668 0.96413 0.94317 0.97733 1.67253 1.04742 1.05971 1.48121 1.23727 0.92165 0.97159 0.98583 0.92506 0.93515 0.93232 0.92930 0.90905 0.89604 0.96094 0.92649 0.94254 0.92934 0.96716 0.95808 0.93345 0.91581 0.90297 0.90653 0.87064 0.90789 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.84 5.64 -26.73 -0.15 -1.99 16 3 C 0.06 1.02 3.58 -3.82 -0.01 1.00 16 4 N -0.50 -9.16 4.10 -218.22 -0.89 -10.05 16 5 C 0.09 1.71 2.12 -67.71 -0.14 1.56 16 6 H 0.07 1.40 6.57 -51.93 -0.34 1.06 16 7 C -0.18 -3.12 8.54 37.16 0.32 -2.80 16 8 C 0.03 0.73 4.40 -27.88 -0.12 0.60 16 9 C -0.49 -13.31 8.82 -34.44 -0.30 -13.61 16 10 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 11 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.05 0.82 2.69 -67.35 -0.18 0.64 16 18 C 0.01 0.14 6.97 -7.55 -0.05 0.08 16 19 N -0.64 -8.87 8.71 -122.45 -1.07 -9.93 16 20 C 0.01 0.21 6.84 -7.45 -0.05 0.16 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.75 6.24 -51.93 -0.32 0.43 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.09 1.72 5.86 -51.93 -0.30 1.42 16 27 H 0.02 0.34 7.14 -51.93 -0.37 -0.03 16 28 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.04 0.61 7.28 -51.93 -0.38 0.23 16 30 H 0.05 0.90 6.74 -51.93 -0.35 0.55 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.63 6.14 -51.93 -0.32 0.31 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.05 7.55 -51.93 -0.39 0.66 16 35 H 0.08 1.28 7.79 -51.93 -0.40 0.88 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.32 3.93 8.91 -39.29 -0.35 3.58 16 38 H 0.07 1.00 7.60 -51.93 -0.39 0.60 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -28.72 300.92 -8.99 -37.71 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.85 Total: 1.74 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.43 Total: -14.65 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -1.23 Total: -46.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.72 -8.99 -37.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695827718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.460 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds