Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 N 1.46900 * 109.47216 * 174.77518 * 3 2 1 5 5 C 1.46900 * 111.00152 * 198.87437 * 4 3 2 6 6 H 1.08998 * 109.47087 * 186.77520 * 5 4 3 7 7 C 1.53000 * 109.46878 * 306.78026 * 5 4 3 8 8 C 1.53002 * 109.46981 * 66.77900 * 5 4 3 9 9 C 1.50700 * 109.47275 * 64.38136 * 8 5 4 10 10 H 1.08000 * 119.99776 * 5.01197 * 9 8 5 11 11 C 1.37875 * 120.00129 * 185.01286 * 9 8 5 12 12 N 1.31515 * 119.99696 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99959 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46739 * 90.00192 * 13 11 9 15 15 H 1.48495 * 109.47141 * 209.99913 * 13 11 9 16 16 H 1.48498 * 109.47324 * 330.00241 * 13 11 9 17 17 C 1.46897 * 110.99794 * 74.92014 * 4 3 2 18 18 C 1.53520 * 114.17143 * 177.21444 * 17 4 3 19 19 N 1.47471 * 87.99846 * 139.69987 * 18 17 4 20 20 C 1.47480 * 87.83960 * 332.96225 * 19 18 17 21 21 H 1.09004 * 109.46990 * 299.99728 * 1 2 3 22 22 H 1.09005 * 109.47645 * 59.99798 * 1 2 3 23 23 H 1.08997 * 109.47086 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46737 * 240.00731 * 2 1 3 25 25 H 1.08997 * 109.47485 * 119.99916 * 2 1 3 26 26 H 1.09002 * 109.46970 * 54.77730 * 3 2 1 27 27 H 1.09002 * 109.47503 * 294.77897 * 3 2 1 28 28 H 1.09008 * 109.46691 * 179.97438 * 7 5 4 29 29 H 1.09004 * 109.47376 * 299.99469 * 7 5 4 30 30 H 1.08996 * 109.47574 * 60.00392 * 7 5 4 31 31 H 1.08997 * 109.46793 * 184.38308 * 8 5 4 32 32 H 1.09002 * 109.47002 * 304.38083 * 8 5 4 33 33 H 0.97004 * 119.99898 * 179.97438 * 12 11 9 34 34 H 1.09002 * 113.38599 * 44.13425 * 17 4 3 35 35 H 1.09003 * 113.47062 * 24.89961 * 18 17 4 36 36 H 1.09002 * 113.47532 * 254.50252 * 18 17 4 37 37 H 1.00904 * 111.00375 * 221.26443 * 19 18 17 38 38 H 1.08997 * 113.47901 * 141.77714 * 20 19 18 39 39 H 1.09003 * 113.47238 * 272.18492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5035 1.4445 0.1261 5 6 3.9916 2.7558 0.5737 6 1 5.0811 2.7676 0.5435 7 6 3.4438 3.8461 -0.3493 8 6 3.5183 3.0145 2.0055 9 6 4.1443 2.0040 2.9319 10 1 4.8746 1.3041 2.5533 11 6 3.7849 1.9730 4.2626 12 7 2.8953 2.8250 4.7233 13 14 4.5603 0.7199 5.4106 14 1 5.7901 1.2948 6.0126 15 1 3.5981 0.3726 6.4869 16 1 4.9094 -0.5036 4.6448 17 6 4.1412 1.0484 -1.1365 18 6 5.6755 1.0909 -1.1063 19 7 5.6740 -0.1632 -1.8822 20 6 4.3599 -0.4657 -1.2849 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8932 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.6022 1.9826 0.8395 27 1 1.7550 1.9287 -0.9330 28 1 3.8056 4.8191 -0.0169 29 1 3.7809 3.6618 -1.3694 30 1 2.3543 3.8343 -0.3190 31 1 3.8138 4.0185 2.3100 32 1 2.4329 2.9257 2.0511 33 1 2.6420 2.8030 5.6595 34 1 3.6988 1.5233 -2.0123 35 1 6.0932 0.9819 -0.1054 36 1 6.0972 1.9369 -1.6491 37 1 6.3803 -0.7991 -1.5431 38 1 3.6658 -0.9388 -1.9794 39 1 4.4266 -0.9911 -0.3322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695827718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = 5.327322 kcal Electronic energy + Delta-G solvation = -16860.552488 eV Core-core repulsion = 14416.932954 eV Total energy + Delta-G solvation = -2443.619535 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04018 -38.15418 -35.26109 -34.22286 -31.49729 -29.14252 -27.85066 -26.79688 -25.70128 -24.79346 -22.37840 -21.10982 -19.75455 -18.34515 -17.83542 -16.88747 -16.57815 -16.09216 -15.65319 -15.17834 -14.41152 -14.36200 -14.11431 -13.73769 -13.58797 -13.45369 -13.34086 -13.03903 -12.84910 -12.52043 -12.49227 -12.37395 -12.06537 -11.96202 -11.72223 -11.37690 -11.16932 -11.03029 -10.90527 -10.44694 -10.00473 -8.94000 -8.08064 -6.11875 1.41148 1.42019 1.52612 2.47653 3.00889 3.27797 3.42405 3.53527 4.07419 4.17554 4.25725 4.28211 4.44287 4.48520 4.51194 4.55906 4.64233 4.69631 4.80596 4.85675 4.88342 4.99332 5.03304 5.06920 5.11176 5.19553 5.24419 5.30958 5.43113 5.48742 5.57795 5.72636 5.92360 6.30143 6.34053 6.50097 6.56920 7.01136 7.53192 9.03962 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.009410 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.237644 B = 2974.850761 C = 3219.199356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.062 3.938 4 N -0.515 5.515 5 C 0.095 3.905 6 H 0.068 0.932 7 C -0.172 4.172 8 C 0.035 3.965 9 C -0.491 4.491 10 H 0.055 0.945 11 C -0.004 4.004 12 N -0.939 5.939 13 Si 0.952 3.048 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.268 1.268 17 C 0.050 3.950 18 C 0.012 3.988 19 N -0.630 5.630 20 C 0.022 3.978 21 H 0.039 0.961 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.049 0.951 31 H -0.012 1.012 32 H 0.000 1.000 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.329 0.671 38 H 0.089 0.911 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -5.139 -12.433 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.066 4.066 4 N -0.239 5.239 5 C -0.013 4.013 6 H 0.086 0.914 7 C -0.231 4.231 8 C -0.002 4.002 9 C -0.529 4.529 10 H 0.074 0.926 11 C -0.200 4.200 12 N -0.582 5.582 13 Si 0.778 3.222 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.192 1.192 17 C -0.059 4.059 18 C -0.119 4.119 19 N -0.255 5.255 20 C -0.109 4.109 21 H 0.059 0.941 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.006 0.994 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.369 -5.262 -12.784 13.829 hybrid contribution 0.141 0.100 1.567 1.577 sum 0.510 -5.161 -11.216 12.358 Atomic orbital electron populations 1.21700 0.94974 1.02135 1.01480 1.21449 0.95857 0.95901 1.01698 1.22076 0.87782 0.97527 0.99181 1.62236 1.05728 1.28755 1.27193 1.21603 0.98599 0.86445 0.94622 0.91392 1.22406 1.01112 0.99862 0.99756 1.19076 0.95398 0.94458 0.91237 1.21401 1.22292 1.15979 0.93274 0.92629 1.25796 0.96112 0.97885 1.00173 1.70091 1.34294 1.38871 1.14923 0.85641 0.78071 0.79859 0.78591 1.20317 1.21454 1.19203 1.23308 0.94510 0.96816 0.91304 1.23593 0.95772 0.95271 0.97231 1.67246 1.04878 1.05735 1.47643 1.23646 0.92746 0.96031 0.98487 0.94146 0.91882 0.91466 0.91020 0.93485 0.93112 0.94457 0.92560 0.91871 0.93208 0.99365 0.98197 0.93407 0.90738 0.91888 0.89686 0.85853 0.89248 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.11 -3.34 5.64 30.59 0.17 -3.17 16 3 C 0.06 2.14 3.58 86.30 0.31 2.45 16 4 N -0.52 -18.57 4.10 -844.33 -3.46 -22.03 16 5 C 0.10 3.78 2.12 44.92 0.10 3.87 16 6 H 0.07 2.70 6.57 -2.39 -0.02 2.69 16 7 C -0.17 -5.73 8.54 71.98 0.62 -5.11 16 8 C 0.04 1.82 4.40 29.85 0.13 1.95 16 9 C -0.49 -27.38 8.82 25.60 0.23 -27.16 16 10 H 0.06 3.06 7.75 -2.91 -0.02 3.03 16 11 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 12 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 13 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.05 1.46 2.69 45.42 0.12 1.58 16 18 C 0.01 0.33 6.97 83.58 0.58 0.91 16 19 N -0.63 -15.85 8.71 -541.31 -4.72 -20.56 16 20 C 0.02 0.57 6.84 83.64 0.57 1.14 16 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.87 6.24 -2.39 -0.01 1.86 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 2.10 5.86 -2.39 -0.01 2.09 16 27 H 0.04 1.15 7.14 -2.39 -0.02 1.13 16 28 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.06 1.80 7.28 -2.38 -0.02 1.78 16 30 H 0.05 1.67 6.74 -2.39 -0.02 1.65 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.00 -0.01 6.14 -2.39 -0.01 -0.03 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.07 2.12 7.55 -2.39 -0.02 2.10 16 35 H 0.06 1.97 7.79 -2.39 -0.02 1.96 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.33 7.30 8.91 -89.69 -0.80 6.50 16 38 H 0.09 2.11 7.60 -2.39 -0.02 2.09 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -61.76 300.92 -1.66 -63.42 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.21 Total: 15.35 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.00 Total: -26.31 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -7.89 Total: -99.68 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -61.76 -1.66 -63.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695827718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.745 kcal (2) G-P(sol) polarization free energy of solvation -61.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds