Wall clock time and date at job start Mon Mar 30 2020 03:10:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47106 * 2 1
4 4 H 1.09004 * 109.46861 * 54.54798 * 3 2 1
5 5 C 1.50696 * 109.47243 * 174.54959 * 3 2 1
6 6 H 1.08001 * 120.00130 * 116.15367 * 5 3 2
7 7 C 1.37885 * 119.99982 * 296.15083 * 5 3 2
8 8 N 1.31512 * 119.99921 * 353.56460 * 7 5 3
9 9 Si 1.86792 * 120.00024 * 173.56110 * 7 5 3
10 10 H 1.48501 * 109.47228 * 270.00136 * 9 7 5
11 11 H 1.48503 * 109.47407 * 29.99959 * 9 7 5
12 12 H 1.48500 * 109.47315 * 150.00265 * 9 7 5
13 13 N 1.46899 * 109.46682 * 294.54908 * 3 2 1
14 14 C 1.46901 * 110.99603 * 154.33113 * 13 3 2
15 15 C 1.53784 * 113.61670 * 255.57100 * 14 13 3
16 16 C 1.53781 * 87.08374 * 220.02076 * 15 14 13
17 17 N 1.46893 * 113.69089 * 139.98908 * 16 15 14
18 18 C 1.46903 * 110.99965 * 82.46641 * 17 16 15
19 19 C 1.46900 * 111.00325 * 206.42126 * 17 16 15
20 20 C 1.53780 * 87.07919 * 25.43212 * 16 15 14
21 21 H 1.08996 * 109.47344 * 305.10346 * 1 2 3
22 22 H 1.08996 * 109.47575 * 65.10699 * 1 2 3
23 23 H 1.09004 * 109.47070 * 185.10846 * 1 2 3
24 24 H 1.09000 * 109.47309 * 239.99662 * 2 1 3
25 25 H 1.09006 * 109.47272 * 119.99974 * 2 1 3
26 26 H 0.97008 * 119.99791 * 355.14741 * 8 7 5
27 27 H 1.00899 * 111.00083 * 278.28083 * 13 3 2
28 28 H 1.09000 * 112.85090 * 26.88426 * 14 13 3
29 29 H 1.09000 * 113.60771 * 334.57106 * 15 14 13
30 30 H 1.08997 * 113.61387 * 105.46892 * 15 14 13
31 31 H 1.09000 * 113.61300 * 270.88734 * 16 15 14
32 32 H 1.08999 * 109.47267 * 59.99884 * 18 17 16
33 33 H 1.09000 * 109.47297 * 180.02562 * 18 17 16
34 34 H 1.09002 * 109.46902 * 300.00030 * 18 17 16
35 35 H 1.08998 * 109.46985 * 59.99736 * 19 17 16
36 36 H 1.09001 * 109.47251 * 180.02562 * 19 17 16
37 37 H 1.09007 * 109.46687 * 300.00039 * 19 17 16
38 38 H 1.09002 * 113.61754 * 220.01732 * 20 16 15
39 39 H 1.09001 * 113.61654 * 89.11714 * 20 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5991 1.9838 0.8372
5 6 3.5409 1.4447 0.1350
6 1 4.1545 1.8310 -0.6655
7 6 4.1308 0.9536 1.2804
8 7 3.3852 0.6011 2.3048
9 14 5.9889 0.7889 1.3771
10 1 6.3928 -0.5549 0.8909
11 1 6.6231 1.8322 0.5318
12 1 6.4283 0.9583 2.7854
13 7 1.6606 2.0959 -1.2598
14 6 1.5651 3.5519 -1.0897
15 6 0.1190 4.0710 -1.0246
16 6 0.5896 5.2577 -1.8820
17 7 -0.3750 5.6591 -2.9145
18 6 -1.4118 6.5360 -2.3540
19 6 0.3035 6.3034 -4.0470
20 6 1.7041 4.3363 -2.4051
21 1 -0.3634 0.5909 0.8407
22 1 -0.3634 0.4325 -0.9321
23 1 -0.3633 -1.0236 0.0915
24 1 1.8933 -0.5139 -0.8899
25 1 1.8933 -0.5139 0.8900
26 1 2.4272 0.7519 2.2820
27 1 2.3063 1.8598 -1.9983
28 1 2.2016 3.9271 -0.2883
29 1 -0.5997 3.4254 -1.5295
30 1 -0.1980 4.3557 -0.0214
31 1 0.9583 6.1001 -1.2967
32 1 -0.9467 7.4320 -1.9430
33 1 -2.1130 6.8178 -3.1395
34 1 -1.9454 6.0083 -1.5634
35 1 1.0170 5.6067 -4.4871
36 1 -0.4338 6.5909 -4.7965
37 1 0.8308 7.1910 -3.6973
38 1 2.6669 4.8351 -2.5164
39 1 1.4188 3.7633 -3.2874
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701499830.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:28
Heat of formation + Delta-G solvation = 12.508210 kcal
Electronic energy + Delta-G solvation = -16320.391215 eV
Core-core repulsion = 13877.083067 eV
Total energy + Delta-G solvation = -2443.308148 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.22041 -36.27821 -34.60554 -31.69853 -30.32230 -27.81282 -25.95928 -24.93529
-24.37183 -22.87858 -20.90797 -19.75640 -18.87379 -17.03009 -16.01923 -15.27188
-14.71451 -14.50469 -13.93687 -13.77737 -13.52169 -13.00353 -12.48817 -12.36711
-12.13552 -11.95995 -11.88673 -11.61958 -11.42444 -10.90914 -10.71693 -10.67215
-10.56729 -10.30482 -10.15422 -9.85703 -9.68894 -9.46445 -8.84116 -8.31913
-8.30549 -7.24834 -6.30978 -4.09706 3.42023 3.43691 3.59632 4.03074
4.51968 4.80708 5.08524 5.16908 5.23197 5.33246 5.34213 5.40197
5.52519 5.55537 5.59366 5.84946 5.86633 6.01707 6.11908 6.24041
6.27133 6.30972 6.39961 6.52367 6.67273 6.75625 6.92125 6.99098
7.06573 7.21693 7.28575 7.40828 7.61076 8.01555 8.12227 8.50406
8.65840 8.83781 9.63545 11.00533
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.032460 B = 0.006558 C = 0.005864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 862.385618 B = 4268.443022 C = 4774.085967
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.109 4.109
3 C 0.202 3.798
4 H 0.023 0.977
5 C -0.625 4.625
6 H 0.047 0.953
7 C 0.026 3.974
8 N -0.908 5.908
9 Si 1.064 2.936
10 H -0.287 1.287
11 H -0.291 1.291
12 H -0.286 1.286
13 N -0.669 5.669
14 C 0.075 3.925
15 C -0.109 4.109
16 C 0.050 3.950
17 N -0.533 5.533
18 C 0.026 3.974
19 C 0.025 3.975
20 C -0.131 4.131
21 H 0.037 0.963
22 H 0.053 0.947
23 H 0.027 0.973
24 H 0.041 0.959
25 H 0.064 0.936
26 H 0.273 0.727
27 H 0.330 0.670
28 H 0.069 0.931
29 H 0.092 0.908
30 H 0.053 0.947
31 H 0.060 0.940
32 H 0.021 0.979
33 H 0.063 0.937
34 H 0.068 0.932
35 H 0.070 0.930
36 H 0.063 0.937
37 H 0.020 0.980
38 H 0.057 0.943
39 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.008 8.990 -8.698 13.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.148 4.148
3 C 0.093 3.907
4 H 0.041 0.959
5 C -0.664 4.664
6 H 0.065 0.935
7 C -0.179 4.179
8 N -0.544 5.544
9 Si 0.893 3.107
10 H -0.214 1.214
11 H -0.217 1.217
12 H -0.211 1.211
13 N -0.298 5.298
14 C -0.037 4.037
15 C -0.148 4.148
16 C -0.059 4.059
17 N -0.257 5.257
18 C -0.123 4.123
19 C -0.123 4.123
20 C -0.169 4.169
21 H 0.056 0.944
22 H 0.072 0.928
23 H 0.047 0.953
24 H 0.060 0.940
25 H 0.082 0.918
26 H 0.085 0.915
27 H 0.147 0.853
28 H 0.087 0.913
29 H 0.111 0.889
30 H 0.072 0.928
31 H 0.077 0.923
32 H 0.039 0.961
33 H 0.082 0.918
34 H 0.087 0.913
35 H 0.088 0.912
36 H 0.081 0.919
37 H 0.039 0.961
38 H 0.076 0.924
39 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -5.682 7.926 -7.802 12.489
hybrid contribution 0.193 1.604 -0.575 1.715
sum -5.489 9.530 -8.377 13.824
Atomic orbital electron populations
1.21692 0.98265 0.98619 1.00912 1.21548 0.92889 0.99518 1.00872
1.19288 0.93665 0.90635 0.87103 0.95898 1.22677 0.92437 1.46447
1.04872 0.93471 1.25686 1.06526 0.93420 0.92309 1.70747 1.08223
1.44129 1.31314 0.83629 0.74907 0.76406 0.75808 1.21398 1.21747
1.21141 1.60898 1.54226 1.05228 1.09427 1.22604 0.95623 0.89605
0.95835 1.23078 0.98410 0.95414 0.97932 1.23076 0.93445 0.95955
0.93400 1.62202 1.13682 1.40980 1.08834 1.22340 0.95146 0.94818
0.99976 1.22337 0.98696 0.97439 0.93862 1.23258 0.96730 0.97681
0.99256 0.94383 0.92828 0.95339 0.94017 0.91794 0.91546 0.85290
0.91329 0.88936 0.92847 0.92251 0.96074 0.91801 0.91298 0.91160
0.91869 0.96124 0.92429 0.89097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.79 9.74 37.16 0.36 -2.42 16
2 C -0.11 -2.59 5.29 -26.73 -0.14 -2.73 16
3 C 0.20 4.95 1.47 -68.86 -0.10 4.85 16
4 H 0.02 0.62 7.26 -51.93 -0.38 0.25 16
5 C -0.63 -17.03 8.40 -34.44 -0.29 -17.32 16
6 H 0.05 1.29 7.71 -52.49 -0.40 0.89 16
7 C 0.03 0.73 5.20 -17.82 -0.09 0.64 16
8 N -0.91 -26.83 12.77 55.43 0.71 -26.12 16
9 Si 1.06 25.01 29.91 -169.99 -5.08 19.93 16
10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16
11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
13 N -0.67 -14.00 5.86 -100.10 -0.59 -14.58 16
14 C 0.07 1.41 3.84 -66.90 -0.26 1.15 16
15 C -0.11 -1.82 7.58 -25.92 -0.20 -2.02 16
16 C 0.05 0.73 3.22 -66.90 -0.22 0.51 16
17 N -0.53 -7.03 4.98 -242.19 -1.21 -8.24 16
18 C 0.03 0.29 9.56 60.07 0.57 0.86 16
19 C 0.02 0.28 9.33 60.06 0.56 0.84 16
20 C -0.13 -2.04 6.20 -25.92 -0.16 -2.20 16
21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
22 H 0.05 1.05 7.91 -51.93 -0.41 0.64 16
23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16
24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
25 H 0.06 1.67 6.15 -51.93 -0.32 1.35 16
26 H 0.27 8.05 6.15 -40.82 -0.25 7.80 16
27 H 0.33 6.92 8.24 -39.29 -0.32 6.59 16
28 H 0.07 1.47 7.85 -51.93 -0.41 1.06 16
29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16
30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16
34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16
35 H 0.07 0.79 7.05 -51.93 -0.37 0.43 16
36 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16
37 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16
38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
39 H 0.09 1.42 7.89 -51.93 -0.41 1.01 16
LS Contribution 308.48 15.07 4.65 4.65
Total: -1.00 -28.38 308.48 -8.61 -36.99
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -7.13 Total: 5.21 kcal
Atomic # 6 Polarization: -17.88 SS G_CDS: 0.04 Total: -17.83 kcal
Atomic # 7 Polarization: -47.86 SS G_CDS: -1.08 Total: -48.94 kcal
Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -28.38 -8.61 -36.99 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701499830.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.498 kcal
(2) G-P(sol) polarization free energy of solvation -28.379 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.119 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds