Wall clock time and date at job start Mon Mar 30 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47106 * 2 1 4 4 H 1.09004 * 109.46861 * 54.54798 * 3 2 1 5 5 C 1.50696 * 109.47243 * 174.54959 * 3 2 1 6 6 H 1.08001 * 120.00130 * 116.15367 * 5 3 2 7 7 C 1.37885 * 119.99982 * 296.15083 * 5 3 2 8 8 N 1.31512 * 119.99921 * 353.56460 * 7 5 3 9 9 Si 1.86792 * 120.00024 * 173.56110 * 7 5 3 10 10 H 1.48501 * 109.47228 * 270.00136 * 9 7 5 11 11 H 1.48503 * 109.47407 * 29.99959 * 9 7 5 12 12 H 1.48500 * 109.47315 * 150.00265 * 9 7 5 13 13 N 1.46899 * 109.46682 * 294.54908 * 3 2 1 14 14 C 1.46901 * 110.99603 * 154.33113 * 13 3 2 15 15 C 1.53784 * 113.61670 * 255.57100 * 14 13 3 16 16 C 1.53781 * 87.08374 * 220.02076 * 15 14 13 17 17 N 1.46893 * 113.69089 * 139.98908 * 16 15 14 18 18 C 1.46903 * 110.99965 * 82.46641 * 17 16 15 19 19 C 1.46900 * 111.00325 * 206.42126 * 17 16 15 20 20 C 1.53780 * 87.07919 * 25.43212 * 16 15 14 21 21 H 1.08996 * 109.47344 * 305.10346 * 1 2 3 22 22 H 1.08996 * 109.47575 * 65.10699 * 1 2 3 23 23 H 1.09004 * 109.47070 * 185.10846 * 1 2 3 24 24 H 1.09000 * 109.47309 * 239.99662 * 2 1 3 25 25 H 1.09006 * 109.47272 * 119.99974 * 2 1 3 26 26 H 0.97008 * 119.99791 * 355.14741 * 8 7 5 27 27 H 1.00899 * 111.00083 * 278.28083 * 13 3 2 28 28 H 1.09000 * 112.85090 * 26.88426 * 14 13 3 29 29 H 1.09000 * 113.60771 * 334.57106 * 15 14 13 30 30 H 1.08997 * 113.61387 * 105.46892 * 15 14 13 31 31 H 1.09000 * 113.61300 * 270.88734 * 16 15 14 32 32 H 1.08999 * 109.47267 * 59.99884 * 18 17 16 33 33 H 1.09000 * 109.47297 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.46902 * 300.00030 * 18 17 16 35 35 H 1.08998 * 109.46985 * 59.99736 * 19 17 16 36 36 H 1.09001 * 109.47251 * 180.02562 * 19 17 16 37 37 H 1.09007 * 109.46687 * 300.00039 * 19 17 16 38 38 H 1.09002 * 113.61754 * 220.01732 * 20 16 15 39 39 H 1.09001 * 113.61654 * 89.11714 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5991 1.9838 0.8372 5 6 3.5409 1.4447 0.1350 6 1 4.1545 1.8310 -0.6655 7 6 4.1308 0.9536 1.2804 8 7 3.3852 0.6011 2.3048 9 14 5.9889 0.7889 1.3771 10 1 6.3928 -0.5549 0.8909 11 1 6.6231 1.8322 0.5318 12 1 6.4283 0.9583 2.7854 13 7 1.6606 2.0959 -1.2598 14 6 1.5651 3.5519 -1.0897 15 6 0.1190 4.0710 -1.0246 16 6 0.5896 5.2577 -1.8820 17 7 -0.3750 5.6591 -2.9145 18 6 -1.4118 6.5360 -2.3540 19 6 0.3035 6.3034 -4.0470 20 6 1.7041 4.3363 -2.4051 21 1 -0.3634 0.5909 0.8407 22 1 -0.3634 0.4325 -0.9321 23 1 -0.3633 -1.0236 0.0915 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 2.4272 0.7519 2.2820 27 1 2.3063 1.8598 -1.9983 28 1 2.2016 3.9271 -0.2883 29 1 -0.5997 3.4254 -1.5295 30 1 -0.1980 4.3557 -0.0214 31 1 0.9583 6.1001 -1.2967 32 1 -0.9467 7.4320 -1.9430 33 1 -2.1130 6.8178 -3.1395 34 1 -1.9454 6.0083 -1.5634 35 1 1.0170 5.6067 -4.4871 36 1 -0.4338 6.5909 -4.7965 37 1 0.8308 7.1910 -3.6973 38 1 2.6669 4.8351 -2.5164 39 1 1.4188 3.7633 -3.2874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701499830.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:28 Heat of formation + Delta-G solvation = -6.160649 kcal Electronic energy + Delta-G solvation = -16321.200757 eV Core-core repulsion = 13877.083067 eV Total energy + Delta-G solvation = -2444.117690 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53727 -37.92599 -36.02791 -33.70546 -32.00857 -28.73871 -27.81383 -26.22445 -25.73194 -24.72161 -22.19813 -21.66670 -20.23661 -19.11161 -17.35605 -16.53830 -16.01978 -15.81627 -15.66975 -15.19687 -15.17121 -14.75922 -14.12690 -13.73885 -13.41798 -13.39324 -13.13271 -13.04966 -12.60712 -12.51873 -12.42033 -12.20902 -12.09564 -11.97714 -11.95620 -11.61304 -11.25789 -11.07153 -10.80792 -10.46261 -9.30497 -9.11652 -8.48831 -6.33460 1.50720 1.57983 1.74975 2.55642 2.99744 3.18338 3.58201 3.73034 3.75638 4.00080 4.09342 4.31392 4.43740 4.48915 4.54030 4.59037 4.69079 4.71850 4.76200 4.80549 4.92796 4.96953 5.00561 5.01916 5.05046 5.22545 5.26015 5.33530 5.43292 5.52460 5.68741 5.97662 6.04047 6.13060 6.17075 6.55928 6.59509 6.83730 7.48331 8.76891 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.006558 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.385618 B = 4268.443022 C = 4774.085967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.209 3.791 4 H -0.009 1.009 5 C -0.633 4.633 6 H 0.042 0.958 7 C -0.023 4.023 8 N -0.931 5.931 9 Si 1.109 2.891 10 H -0.274 1.274 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.658 5.658 14 C 0.060 3.940 15 C -0.102 4.102 16 C 0.066 3.934 17 N -0.546 5.546 18 C 0.025 3.975 19 C 0.024 3.976 20 C -0.115 4.115 21 H 0.031 0.969 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.034 0.966 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.065 0.935 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 9.791 -10.304 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.099 3.901 4 H 0.009 0.991 5 C -0.672 4.672 6 H 0.061 0.939 7 C -0.223 4.223 8 N -0.568 5.568 9 Si 0.933 3.067 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.287 5.287 14 C -0.052 4.052 15 C -0.141 4.141 16 C -0.043 4.043 17 N -0.270 5.270 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.153 4.153 21 H 0.051 0.949 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.871 8.742 -9.433 14.138 hybrid contribution 0.198 1.398 -0.102 1.416 sum -5.673 10.140 -9.535 15.031 Atomic orbital electron populations 1.21553 0.95510 1.00029 1.01127 1.21415 0.95324 0.98267 0.99308 1.19082 0.92167 0.91202 0.87639 0.99074 1.23003 0.93953 1.45697 1.04533 0.93933 1.27023 1.10253 0.92933 0.92085 1.70859 1.07723 1.45947 1.32295 0.83021 0.70340 0.77385 0.75993 1.20013 1.20111 1.21214 1.60890 1.53586 1.06569 1.07638 1.22681 0.96920 0.88443 0.97123 1.22968 0.96600 0.96288 0.98277 1.22837 0.93010 0.95193 0.93275 1.62167 1.13665 1.42374 1.08790 1.22395 0.94874 0.94556 1.00515 1.22395 0.99170 0.97393 0.93398 1.23132 0.97690 0.97135 0.97346 0.94935 0.91889 0.93171 0.94055 0.94707 0.92866 0.85279 0.94469 0.89416 0.93284 0.91998 0.95507 0.89949 0.91841 0.91373 0.90083 0.95620 0.91653 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.74 71.98 0.70 -4.27 16 2 C -0.10 -4.98 5.29 30.59 0.16 -4.82 16 3 C 0.21 10.48 1.47 44.17 0.07 10.54 16 4 H -0.01 -0.49 7.26 -2.39 -0.02 -0.50 16 5 C -0.63 -35.00 8.40 25.60 0.22 -34.79 16 6 H 0.04 2.34 7.71 -2.91 -0.02 2.32 16 7 C -0.02 -1.31 5.20 84.66 0.44 -0.87 16 8 N -0.93 -56.29 12.77 21.45 0.27 -56.02 16 9 Si 1.11 50.33 29.91 68.60 2.05 52.38 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.66 -27.65 5.86 -470.60 -2.76 -30.40 16 14 C 0.06 2.25 3.84 45.44 0.17 2.42 16 15 C -0.10 -3.36 7.58 31.12 0.24 -3.12 16 16 C 0.07 1.82 3.22 45.44 0.15 1.97 16 17 N -0.55 -13.08 4.98 -920.16 -4.58 -17.66 16 18 C 0.02 0.49 9.56 127.69 1.22 1.71 16 19 C 0.02 0.47 9.33 127.69 1.19 1.66 16 20 C -0.11 -3.42 6.20 31.12 0.19 -3.23 16 21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 2.38 7.91 -2.39 -0.02 2.36 16 23 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 24 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.03 1.85 6.15 -2.38 -0.01 1.83 16 26 H 0.26 16.00 6.15 -92.70 -0.57 15.43 16 27 H 0.33 13.74 8.24 -89.70 -0.74 13.00 16 28 H 0.04 1.64 7.85 -2.39 -0.02 1.63 16 29 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 34 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.07 1.35 7.05 -2.39 -0.02 1.34 16 36 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 37 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 2.80 7.89 -2.39 -0.02 2.78 16 Total: -1.00 -61.02 308.48 0.18 -60.84 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.45 Total: 23.65 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.74 Total: -32.79 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -7.07 Total: -104.08 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal Total: -61.02 0.18 -60.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701499830.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.678 kcal (2) G-P(sol) polarization free energy of solvation -61.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds