Wall clock time and date at job start Mon Mar 30 2020 03:10:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47106 * 2 1
4 4 H 1.09004 * 109.46861 * 54.54798 * 3 2 1
5 5 C 1.50696 * 109.47243 * 174.54959 * 3 2 1
6 6 H 1.08001 * 120.00130 * 116.15367 * 5 3 2
7 7 C 1.37885 * 119.99982 * 296.15083 * 5 3 2
8 8 N 1.31512 * 119.99921 * 353.56460 * 7 5 3
9 9 Si 1.86792 * 120.00024 * 173.56110 * 7 5 3
10 10 H 1.48501 * 109.47228 * 270.00136 * 9 7 5
11 11 H 1.48503 * 109.47407 * 29.99959 * 9 7 5
12 12 H 1.48500 * 109.47315 * 150.00265 * 9 7 5
13 13 N 1.46899 * 109.46682 * 294.54908 * 3 2 1
14 14 C 1.46901 * 110.99603 * 154.33113 * 13 3 2
15 15 C 1.53784 * 113.61670 * 255.57100 * 14 13 3
16 16 C 1.53781 * 87.08374 * 220.02076 * 15 14 13
17 17 N 1.46893 * 113.69089 * 139.98908 * 16 15 14
18 18 C 1.46903 * 110.99965 * 82.46641 * 17 16 15
19 19 C 1.46900 * 111.00325 * 206.42126 * 17 16 15
20 20 C 1.53780 * 87.07919 * 25.43212 * 16 15 14
21 21 H 1.08996 * 109.47344 * 305.10346 * 1 2 3
22 22 H 1.08996 * 109.47575 * 65.10699 * 1 2 3
23 23 H 1.09004 * 109.47070 * 185.10846 * 1 2 3
24 24 H 1.09000 * 109.47309 * 239.99662 * 2 1 3
25 25 H 1.09006 * 109.47272 * 119.99974 * 2 1 3
26 26 H 0.97008 * 119.99791 * 355.14741 * 8 7 5
27 27 H 1.00899 * 111.00083 * 278.28083 * 13 3 2
28 28 H 1.09000 * 112.85090 * 26.88426 * 14 13 3
29 29 H 1.09000 * 113.60771 * 334.57106 * 15 14 13
30 30 H 1.08997 * 113.61387 * 105.46892 * 15 14 13
31 31 H 1.09000 * 113.61300 * 270.88734 * 16 15 14
32 32 H 1.08999 * 109.47267 * 59.99884 * 18 17 16
33 33 H 1.09000 * 109.47297 * 180.02562 * 18 17 16
34 34 H 1.09002 * 109.46902 * 300.00030 * 18 17 16
35 35 H 1.08998 * 109.46985 * 59.99736 * 19 17 16
36 36 H 1.09001 * 109.47251 * 180.02562 * 19 17 16
37 37 H 1.09007 * 109.46687 * 300.00039 * 19 17 16
38 38 H 1.09002 * 113.61754 * 220.01732 * 20 16 15
39 39 H 1.09001 * 113.61654 * 89.11714 * 20 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5991 1.9838 0.8372
5 6 3.5409 1.4447 0.1350
6 1 4.1545 1.8310 -0.6655
7 6 4.1308 0.9536 1.2804
8 7 3.3852 0.6011 2.3048
9 14 5.9889 0.7889 1.3771
10 1 6.3928 -0.5549 0.8909
11 1 6.6231 1.8322 0.5318
12 1 6.4283 0.9583 2.7854
13 7 1.6606 2.0959 -1.2598
14 6 1.5651 3.5519 -1.0897
15 6 0.1190 4.0710 -1.0246
16 6 0.5896 5.2577 -1.8820
17 7 -0.3750 5.6591 -2.9145
18 6 -1.4118 6.5360 -2.3540
19 6 0.3035 6.3034 -4.0470
20 6 1.7041 4.3363 -2.4051
21 1 -0.3634 0.5909 0.8407
22 1 -0.3634 0.4325 -0.9321
23 1 -0.3633 -1.0236 0.0915
24 1 1.8933 -0.5139 -0.8899
25 1 1.8933 -0.5139 0.8900
26 1 2.4272 0.7519 2.2820
27 1 2.3063 1.8598 -1.9983
28 1 2.2016 3.9271 -0.2883
29 1 -0.5997 3.4254 -1.5295
30 1 -0.1980 4.3557 -0.0214
31 1 0.9583 6.1001 -1.2967
32 1 -0.9467 7.4320 -1.9430
33 1 -2.1130 6.8178 -3.1395
34 1 -1.9454 6.0083 -1.5634
35 1 1.0170 5.6067 -4.4871
36 1 -0.4338 6.5909 -4.7965
37 1 0.8308 7.1910 -3.6973
38 1 2.6669 4.8351 -2.5164
39 1 1.4188 3.7633 -3.2874
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701499830.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:28
Heat of formation + Delta-G solvation = -6.160649 kcal
Electronic energy + Delta-G solvation = -16321.200757 eV
Core-core repulsion = 13877.083067 eV
Total energy + Delta-G solvation = -2444.117690 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.53727 -37.92599 -36.02791 -33.70546 -32.00857 -28.73871 -27.81383 -26.22445
-25.73194 -24.72161 -22.19813 -21.66670 -20.23661 -19.11161 -17.35605 -16.53830
-16.01978 -15.81627 -15.66975 -15.19687 -15.17121 -14.75922 -14.12690 -13.73885
-13.41798 -13.39324 -13.13271 -13.04966 -12.60712 -12.51873 -12.42033 -12.20902
-12.09564 -11.97714 -11.95620 -11.61304 -11.25789 -11.07153 -10.80792 -10.46261
-9.30497 -9.11652 -8.48831 -6.33460 1.50720 1.57983 1.74975 2.55642
2.99744 3.18338 3.58201 3.73034 3.75638 4.00080 4.09342 4.31392
4.43740 4.48915 4.54030 4.59037 4.69079 4.71850 4.76200 4.80549
4.92796 4.96953 5.00561 5.01916 5.05046 5.22545 5.26015 5.33530
5.43292 5.52460 5.68741 5.97662 6.04047 6.13060 6.17075 6.55928
6.59509 6.83730 7.48331 8.76891
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.032460 B = 0.006558 C = 0.005864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 862.385618 B = 4268.443022 C = 4774.085967
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.104 4.104
3 C 0.209 3.791
4 H -0.009 1.009
5 C -0.633 4.633
6 H 0.042 0.958
7 C -0.023 4.023
8 N -0.931 5.931
9 Si 1.109 2.891
10 H -0.274 1.274
11 H -0.276 1.276
12 H -0.286 1.286
13 N -0.658 5.658
14 C 0.060 3.940
15 C -0.102 4.102
16 C 0.066 3.934
17 N -0.546 5.546
18 C 0.025 3.975
19 C 0.024 3.976
20 C -0.115 4.115
21 H 0.031 0.969
22 H 0.062 0.938
23 H 0.049 0.951
24 H 0.041 0.959
25 H 0.034 0.966
26 H 0.261 0.739
27 H 0.330 0.670
28 H 0.037 0.963
29 H 0.087 0.913
30 H 0.048 0.952
31 H 0.062 0.938
32 H 0.026 0.974
33 H 0.082 0.918
34 H 0.063 0.937
35 H 0.067 0.933
36 H 0.080 0.920
37 H 0.025 0.975
38 H 0.065 0.935
39 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.175 9.791 -10.304 15.498
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C -0.143 4.143
3 C 0.099 3.901
4 H 0.009 0.991
5 C -0.672 4.672
6 H 0.061 0.939
7 C -0.223 4.223
8 N -0.568 5.568
9 Si 0.933 3.067
10 H -0.200 1.200
11 H -0.201 1.201
12 H -0.212 1.212
13 N -0.287 5.287
14 C -0.052 4.052
15 C -0.141 4.141
16 C -0.043 4.043
17 N -0.270 5.270
18 C -0.123 4.123
19 C -0.124 4.124
20 C -0.153 4.153
21 H 0.051 0.949
22 H 0.081 0.919
23 H 0.068 0.932
24 H 0.059 0.941
25 H 0.053 0.947
26 H 0.071 0.929
27 H 0.147 0.853
28 H 0.055 0.945
29 H 0.106 0.894
30 H 0.067 0.933
31 H 0.080 0.920
32 H 0.045 0.955
33 H 0.101 0.899
34 H 0.082 0.918
35 H 0.086 0.914
36 H 0.099 0.901
37 H 0.044 0.956
38 H 0.083 0.917
39 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -5.871 8.742 -9.433 14.138
hybrid contribution 0.198 1.398 -0.102 1.416
sum -5.673 10.140 -9.535 15.031
Atomic orbital electron populations
1.21553 0.95510 1.00029 1.01127 1.21415 0.95324 0.98267 0.99308
1.19082 0.92167 0.91202 0.87639 0.99074 1.23003 0.93953 1.45697
1.04533 0.93933 1.27023 1.10253 0.92933 0.92085 1.70859 1.07723
1.45947 1.32295 0.83021 0.70340 0.77385 0.75993 1.20013 1.20111
1.21214 1.60890 1.53586 1.06569 1.07638 1.22681 0.96920 0.88443
0.97123 1.22968 0.96600 0.96288 0.98277 1.22837 0.93010 0.95193
0.93275 1.62167 1.13665 1.42374 1.08790 1.22395 0.94874 0.94556
1.00515 1.22395 0.99170 0.97393 0.93398 1.23132 0.97690 0.97135
0.97346 0.94935 0.91889 0.93171 0.94055 0.94707 0.92866 0.85279
0.94469 0.89416 0.93284 0.91998 0.95507 0.89949 0.91841 0.91373
0.90083 0.95620 0.91653 0.88608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.98 9.74 71.98 0.70 -4.27 16
2 C -0.10 -4.98 5.29 30.59 0.16 -4.82 16
3 C 0.21 10.48 1.47 44.17 0.07 10.54 16
4 H -0.01 -0.49 7.26 -2.39 -0.02 -0.50 16
5 C -0.63 -35.00 8.40 25.60 0.22 -34.79 16
6 H 0.04 2.34 7.71 -2.91 -0.02 2.32 16
7 C -0.02 -1.31 5.20 84.66 0.44 -0.87 16
8 N -0.93 -56.29 12.77 21.45 0.27 -56.02 16
9 Si 1.11 50.33 29.91 68.60 2.05 52.38 16
10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16
12 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16
13 N -0.66 -27.65 5.86 -470.60 -2.76 -30.40 16
14 C 0.06 2.25 3.84 45.44 0.17 2.42 16
15 C -0.10 -3.36 7.58 31.12 0.24 -3.12 16
16 C 0.07 1.82 3.22 45.44 0.15 1.97 16
17 N -0.55 -13.08 4.98 -920.16 -4.58 -17.66 16
18 C 0.02 0.49 9.56 127.69 1.22 1.71 16
19 C 0.02 0.47 9.33 127.69 1.19 1.66 16
20 C -0.11 -3.42 6.20 31.12 0.19 -3.23 16
21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16
22 H 0.06 2.38 7.91 -2.39 -0.02 2.36 16
23 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16
24 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
25 H 0.03 1.85 6.15 -2.38 -0.01 1.83 16
26 H 0.26 16.00 6.15 -92.70 -0.57 15.43 16
27 H 0.33 13.74 8.24 -89.70 -0.74 13.00 16
28 H 0.04 1.64 7.85 -2.39 -0.02 1.63 16
29 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16
30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
32 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16
34 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16
35 H 0.07 1.35 7.05 -2.39 -0.02 1.34 16
36 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16
37 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16
38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
39 H 0.10 2.80 7.89 -2.39 -0.02 2.78 16
Total: -1.00 -61.02 308.48 0.18 -60.84
By element:
Atomic # 1 Polarization: 23.20 SS G_CDS: 0.45 Total: 23.65 kcal
Atomic # 6 Polarization: -37.54 SS G_CDS: 4.74 Total: -32.79 kcal
Atomic # 7 Polarization: -97.02 SS G_CDS: -7.07 Total: -104.08 kcal
Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal
Total: -61.02 0.18 -60.84 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701499830.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.678 kcal
(2) G-P(sol) polarization free energy of solvation -61.021 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.343 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds