Wall clock time and date at job start Mon Mar 30 2020 03:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46987 * 2 1 4 4 H 1.09005 * 109.50945 * 54.78878 * 3 2 1 5 5 C 1.53049 * 109.49084 * 294.73392 * 3 2 1 6 6 N 1.46955 * 109.36933 * 181.63011 * 5 3 2 7 7 C 1.46964 * 110.87765 * 59.32247 * 6 5 3 8 8 C 1.53049 * 109.36181 * 300.68199 * 7 6 5 9 9 N 1.46954 * 109.48890 * 174.84453 * 3 2 1 10 10 C 1.46900 * 111.00181 * 303.15398 * 9 3 2 11 11 C 1.52996 * 109.47172 * 304.33428 * 10 9 3 12 12 C 1.53001 * 109.47101 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46946 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99772 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00307 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99778 * 180.02562 * 15 13 12 18 18 H 1.48510 * 109.47134 * 90.00199 * 17 15 13 19 19 H 1.48501 * 109.47241 * 209.99990 * 17 15 13 20 20 H 1.48500 * 109.47281 * 329.99852 * 17 15 13 21 21 H 1.08999 * 109.46919 * 65.75606 * 1 2 3 22 22 H 1.08998 * 109.47043 * 185.76046 * 1 2 3 23 23 H 1.08996 * 109.46985 * 305.75977 * 1 2 3 24 24 H 1.09003 * 109.46768 * 240.00194 * 2 1 3 25 25 H 1.09001 * 109.47177 * 119.99863 * 2 1 3 26 26 H 1.09008 * 109.48791 * 61.66632 * 5 3 2 27 27 H 1.08999 * 109.49369 * 301.60071 * 5 3 2 28 28 H 1.00895 * 110.99953 * 295.45517 * 6 5 3 29 29 H 1.08999 * 109.48748 * 180.71655 * 7 6 5 30 30 H 1.09000 * 109.48452 * 60.64509 * 7 6 5 31 31 H 1.09004 * 109.49040 * 298.42945 * 8 7 6 32 32 H 1.09004 * 109.50501 * 178.38194 * 8 7 6 33 33 H 1.08998 * 109.47165 * 184.33294 * 10 9 3 34 34 H 1.09002 * 109.46692 * 64.33302 * 10 9 3 35 35 H 1.08999 * 109.47114 * 300.00322 * 11 10 9 36 36 H 1.09000 * 109.46733 * 59.99605 * 11 10 9 37 37 H 1.08992 * 109.47147 * 300.00040 * 12 11 10 38 38 H 1.08998 * 109.46708 * 60.00189 * 12 11 10 39 39 H 0.96995 * 120.00515 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9832 0.8395 5 6 1.6410 2.1252 -1.3104 6 7 2.1656 3.4978 -1.3243 7 6 3.6300 3.5002 -1.1998 8 6 4.0289 2.8175 0.1106 9 7 3.5042 1.4449 0.1245 10 6 3.9308 0.7304 1.3351 11 6 3.2471 1.3454 2.5578 12 6 3.6909 0.6008 3.8186 13 6 3.0179 1.2070 5.0230 14 1 2.3410 2.0396 4.9013 15 6 3.2664 0.6985 6.2803 16 7 4.0911 -0.3151 6.4285 17 14 2.4315 1.4493 7.7732 18 1 1.1412 0.7566 8.0195 19 1 3.3100 1.2965 8.9607 20 1 2.1797 2.8919 7.5263 21 1 -0.3633 0.4220 -0.9370 22 1 -0.3633 -1.0225 0.1031 23 1 -0.3633 0.6005 0.8339 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.5542 2.1504 -1.3911 27 1 2.0556 1.5690 -2.1512 28 1 1.7401 4.0548 -0.5985 29 1 3.9932 4.5279 -1.1997 30 1 4.0671 2.9595 -2.0393 31 1 3.6143 3.3738 0.9514 32 1 5.1156 2.7924 0.1918 33 1 5.0123 0.8130 1.4436 34 1 3.6531 -0.3205 1.2536 35 1 3.5248 2.3962 2.6392 36 1 2.1657 1.2627 2.4492 37 1 3.4129 -0.4499 3.7369 38 1 4.7723 0.6831 3.9273 39 1 4.2656 -0.6731 7.3129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704599264.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:14 Heat of formation + Delta-G solvation = -36.210895 kcal Electronic energy + Delta-G solvation = -16458.636434 eV Core-core repulsion = 14013.215667 eV Total energy + Delta-G solvation = -2445.420767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82521 -36.71491 -35.28738 -34.80620 -32.63712 -30.29287 -28.58712 -26.21679 -25.34213 -23.89699 -22.69836 -22.24739 -20.27758 -18.57453 -17.09475 -16.80629 -16.61724 -16.38435 -15.80806 -15.17454 -15.10188 -14.56875 -14.45697 -13.94943 -13.85124 -13.49611 -13.23048 -12.88743 -12.65070 -12.62786 -12.52006 -12.46449 -12.26161 -12.07642 -11.75635 -11.57404 -11.40371 -11.33003 -11.28945 -10.61115 -9.48849 -9.13338 -8.25001 -6.37752 1.34887 1.36288 1.47345 2.35597 2.87194 3.06911 3.34637 3.88161 3.97836 4.02952 4.16915 4.21428 4.31863 4.38183 4.43037 4.50593 4.58152 4.63289 4.71673 4.77252 4.89679 4.91691 5.02702 5.07539 5.10532 5.14532 5.26031 5.32436 5.38915 5.45431 5.63388 5.77539 5.95516 6.01359 6.18698 6.19351 6.40661 6.78225 7.31801 8.86002 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.006203 C = 0.005880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.856035 B = 4512.892279 C = 4760.761266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.046 3.954 4 H 0.027 0.973 5 C 0.072 3.928 6 N -0.688 5.688 7 C 0.067 3.933 8 C 0.011 3.989 9 N -0.528 5.528 10 C 0.061 3.939 11 C -0.121 4.121 12 C 0.031 3.969 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.341 0.659 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.047 0.953 37 H -0.008 1.008 38 H -0.010 1.010 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 5.111 -15.357 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.064 4.064 4 H 0.045 0.955 5 C -0.058 4.058 6 N -0.316 5.316 7 C -0.063 4.063 8 C -0.118 4.118 9 N -0.251 5.251 10 C -0.067 4.067 11 C -0.160 4.160 12 C -0.007 4.007 13 C -0.585 4.585 14 H 0.072 0.928 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.190 1.190 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.158 0.842 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.474 4.828 -16.382 17.655 hybrid contribution -0.205 0.144 3.030 3.040 sum -4.679 4.971 -13.352 14.996 Atomic orbital electron populations 1.21752 0.94249 1.02166 1.02190 1.21535 0.96738 0.95125 1.02015 1.22493 0.87521 0.97768 0.98623 0.95507 1.22180 1.00523 0.88076 0.95048 1.60837 1.05825 1.12208 1.52701 1.22099 0.88099 1.00859 0.95203 1.22941 1.01008 0.89072 0.98821 1.62500 1.10483 1.15384 1.36772 1.22153 0.99247 0.98305 0.87008 1.21937 0.99478 0.98831 0.95770 1.18893 0.94779 0.94509 0.92534 1.21650 1.27020 1.16658 0.93124 0.92838 1.25973 0.95793 0.95396 1.02475 1.70083 1.36922 1.25987 1.24117 0.85470 0.78480 0.79044 0.78212 1.19583 1.20382 1.18960 0.90661 0.92052 0.93813 0.90626 0.93695 0.88877 0.90201 0.84222 0.88727 0.90089 0.95941 0.90232 0.91640 0.91014 0.94115 0.93426 0.98986 0.99135 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.53 71.98 0.69 -2.48 16 2 C -0.12 -3.01 5.12 30.59 0.16 -2.85 16 3 C 0.05 1.23 1.43 44.92 0.06 1.30 16 4 H 0.03 0.84 6.43 -2.38 -0.02 0.83 16 5 C 0.07 1.55 5.72 86.31 0.49 2.04 16 6 N -0.69 -14.67 6.91 -513.42 -3.55 -18.22 16 7 C 0.07 1.42 6.72 86.31 0.58 2.00 16 8 C 0.01 0.30 5.30 86.31 0.46 0.76 16 9 N -0.53 -15.60 4.73 -870.49 -4.12 -19.72 16 10 C 0.06 2.17 4.80 86.30 0.41 2.59 16 11 C -0.12 -5.16 4.36 30.59 0.13 -5.03 16 12 C 0.03 1.66 4.97 29.85 0.15 1.80 16 13 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 14 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 17 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H 0.07 1.30 6.90 -2.39 -0.02 1.28 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.04 1.41 6.04 -2.39 -0.01 1.40 16 26 H 0.09 1.73 6.79 -2.38 -0.02 1.72 16 27 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.34 7.03 8.89 -89.70 -0.80 6.23 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.02 0.67 6.69 -2.38 -0.02 0.65 16 32 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 33 H 0.07 2.36 8.06 -2.39 -0.02 2.34 16 34 H 0.07 2.61 6.39 -2.39 -0.02 2.59 16 35 H 0.04 1.74 6.69 -2.39 -0.02 1.73 16 36 H 0.05 2.03 6.25 -2.39 -0.01 2.02 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -63.98 296.73 -1.31 -65.30 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.21 Total: 13.95 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 3.83 Total: -31.06 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -7.38 Total: -95.05 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -63.98 -1.31 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704599264.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.086 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds