Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47628 * 2 1 4 4 H 1.08992 * 109.47738 * 180.76719 * 3 2 1 5 5 C 1.50702 * 109.46933 * 300.77083 * 3 2 1 6 6 H 1.08002 * 119.99913 * 119.99640 * 5 3 2 7 7 C 1.37879 * 119.99815 * 299.99319 * 5 3 2 8 8 N 1.31514 * 120.00278 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99649 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47395 * 60.00252 * 9 7 5 11 11 H 1.48498 * 109.46656 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47003 * 299.99698 * 9 7 5 13 13 N 1.46904 * 109.46750 * 60.76387 * 3 2 1 14 14 C 1.46902 * 110.99663 * 85.87520 * 13 3 2 15 15 C 1.52996 * 109.47151 * 175.67617 * 14 13 3 16 16 H 1.09006 * 112.95760 * 287.14524 * 15 14 13 17 17 C 1.53936 * 113.76204 * 155.49444 * 15 14 13 18 18 C 1.53936 * 86.34181 * 221.96533 * 17 15 14 19 19 N 1.47958 * 86.18339 * 23.71939 * 18 17 15 20 20 C 1.46904 * 111.00186 * 222.41985 * 19 18 17 21 21 C 1.52994 * 109.46911 * 269.35672 * 20 19 18 22 22 H 1.08997 * 109.47560 * 65.16659 * 1 2 3 23 23 H 1.08998 * 109.47461 * 185.17103 * 1 2 3 24 24 H 1.09001 * 109.46882 * 305.16707 * 1 2 3 25 25 H 1.09006 * 109.46831 * 240.00043 * 2 1 3 26 26 H 1.09003 * 109.47426 * 120.00312 * 2 1 3 27 27 H 0.96996 * 120.00014 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99971 * 209.82706 * 13 3 2 29 29 H 1.08995 * 109.47129 * 295.67765 * 14 13 3 30 30 H 1.08998 * 109.47034 * 55.68114 * 14 13 3 31 31 H 1.08999 * 113.72818 * 336.32136 * 17 15 14 32 32 H 1.09000 * 113.73057 * 107.50084 * 17 15 14 33 33 H 1.08996 * 113.76239 * 138.03789 * 18 17 15 34 34 H 1.09003 * 113.75455 * 269.40222 * 18 17 15 35 35 H 1.09004 * 109.47110 * 29.35833 * 20 19 18 36 36 H 1.08998 * 109.46935 * 149.35685 * 20 19 18 37 37 H 1.08997 * 109.47363 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.47425 * 299.99923 * 21 20 19 39 39 H 1.09006 * 109.47151 * 60.00040 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0138 5 6 1.5222 2.1584 -1.2208 6 1 0.9026 3.0360 -1.1099 7 6 1.8395 1.6929 -2.4793 8 7 2.5935 0.6240 -2.6143 9 14 1.1981 2.5808 -3.9926 10 1 1.6936 3.9806 -3.9924 11 1 1.6772 1.8858 -5.2143 12 1 -0.2868 2.5813 -3.9740 13 7 1.5655 2.1296 1.2086 14 6 2.4747 1.8955 2.3385 15 6 2.0082 2.7110 3.5460 16 1 2.1975 3.7789 3.4365 17 6 2.4667 2.1352 4.8979 18 6 1.0503 2.4610 5.4052 19 7 0.6331 2.3891 3.9875 20 6 -0.2949 3.4786 3.6559 21 6 -1.7328 3.0144 3.8961 22 1 -0.3634 0.4316 -0.9326 23 1 -0.3634 -1.0234 0.0926 24 1 -0.3633 0.5919 0.8401 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.8164 0.2963 -3.4997 28 1 1.4456 3.1171 1.0396 29 1 2.4724 0.8357 2.5931 30 1 3.4839 2.2006 2.0620 31 1 2.6874 1.0682 4.8681 32 1 3.2518 2.7183 5.3794 33 1 0.6174 1.6802 6.0305 34 1 0.9578 3.4561 5.8403 35 1 -0.0817 4.3420 4.2862 36 1 -0.1722 3.7542 2.6085 37 1 -2.4214 3.8229 3.6505 38 1 -1.9460 2.1511 3.2658 39 1 -1.8555 2.7388 4.9436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712527910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = 24.273949 kcal Electronic energy + Delta-G solvation = -16517.344005 eV Core-core repulsion = 14074.546058 eV Total energy + Delta-G solvation = -2442.797947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75992 -35.98159 -32.83334 -32.17776 -30.58465 -27.59992 -26.92363 -25.37737 -23.05786 -22.30721 -21.56591 -19.37332 -18.88674 -16.37480 -15.96368 -15.18924 -14.73480 -14.60379 -13.92896 -13.51330 -13.21841 -12.90369 -12.64185 -12.20612 -11.91483 -11.86777 -11.83571 -11.28307 -10.99114 -10.86367 -10.85240 -10.56104 -10.42044 -10.31644 -10.24202 -9.93705 -9.56783 -9.21991 -8.69879 -8.42775 -8.40437 -7.06612 -5.96348 -4.01564 3.33014 3.37853 3.40411 4.09503 4.43969 4.68947 4.90408 5.19520 5.33703 5.35500 5.41671 5.52792 5.63781 5.72866 5.80739 5.84129 5.93396 6.02033 6.14982 6.25839 6.34921 6.46207 6.57817 6.66090 6.78584 6.85263 6.98559 7.38042 7.40271 7.44234 7.60810 7.84467 7.86370 7.94961 8.35949 8.49703 8.77569 9.08779 9.62891 11.09479 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.006927 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.145342 B = 4041.189179 C = 4271.339505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C 0.216 3.784 4 H -0.003 1.003 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.673 5.673 14 C 0.081 3.919 15 C 0.035 3.965 16 H 0.068 0.932 17 C -0.141 4.141 18 C -0.006 4.006 19 N -0.450 5.450 20 C 0.021 3.979 21 C -0.138 4.138 22 H 0.048 0.952 23 H 0.010 0.990 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.009 0.991 27 H 0.260 0.740 28 H 0.323 0.677 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 4.073 12.880 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C 0.109 3.891 4 H 0.014 0.986 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.303 5.303 14 C -0.049 4.049 15 C -0.074 4.074 16 H 0.086 0.914 17 C -0.180 4.180 18 C -0.135 4.135 19 N -0.173 5.173 20 C -0.107 4.107 21 C -0.196 4.196 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.139 0.861 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.937 2.864 12.633 13.283 hybrid contribution 0.734 1.833 -0.880 2.161 sum -2.203 4.697 11.754 12.847 Atomic orbital electron populations 1.21416 0.97511 0.97031 1.01521 1.21379 0.95082 0.98179 0.99104 1.19117 0.92786 0.91664 0.85548 0.98552 1.21165 1.31481 1.11848 0.90455 0.92534 1.24879 0.95127 0.95019 0.98811 1.69881 1.37080 1.22884 1.22995 0.86667 0.79340 0.79644 0.82372 1.20481 1.21376 1.20251 1.60645 1.48408 1.14999 1.06234 1.21791 0.93294 0.99283 0.90535 1.23510 0.90297 0.98179 0.95445 0.91357 1.23384 0.96303 1.02283 0.95992 1.23939 0.95751 1.00542 0.93255 1.68527 1.05204 1.39284 1.04278 1.22565 0.94226 0.92242 1.01709 1.21614 0.95208 1.01595 1.01178 0.93313 0.97126 0.92999 0.89921 0.97244 0.92985 0.86097 0.91370 0.96266 0.89141 0.91646 0.89940 0.92115 0.95287 0.90050 0.93112 0.91523 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.47 37.15 0.35 -2.41 16 2 C -0.10 -2.48 5.58 -26.74 -0.15 -2.63 16 3 C 0.22 5.46 2.30 -68.86 -0.16 5.30 16 4 H 0.00 -0.09 7.72 -51.93 -0.40 -0.49 16 5 C -0.51 -13.85 7.39 -34.44 -0.25 -14.11 16 6 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.52 11.33 55.43 0.63 -24.89 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.67 -14.22 5.45 -107.95 -0.59 -14.81 16 14 C 0.08 1.48 5.66 -3.82 -0.02 1.46 16 15 C 0.04 0.52 3.44 -66.65 -0.23 0.29 16 16 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 17 C -0.14 -1.72 7.84 -25.80 -0.20 -1.93 16 18 C -0.01 -0.07 7.96 -2.77 -0.02 -0.09 16 19 N -0.45 -6.70 5.90 -230.67 -1.36 -8.06 16 20 C 0.02 0.30 5.52 -3.83 -0.02 0.28 16 21 C -0.14 -1.80 10.22 37.15 0.38 -1.42 16 22 H 0.05 1.22 7.39 -51.93 -0.38 0.83 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.05 1.20 7.47 -51.93 -0.39 0.81 16 25 H 0.08 2.29 6.09 -51.93 -0.32 1.97 16 26 H 0.01 0.21 7.58 -51.93 -0.39 -0.18 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.32 6.74 7.93 -39.29 -0.31 6.43 16 29 H 0.07 1.32 7.35 -51.93 -0.38 0.93 16 30 H 0.02 0.36 7.95 -51.93 -0.41 -0.05 16 31 H 0.09 1.13 7.94 -51.93 -0.41 0.72 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.65 7.48 -51.93 -0.39 0.27 16 35 H 0.03 0.36 7.38 -51.93 -0.38 -0.02 16 36 H 0.08 1.27 7.86 -51.93 -0.41 0.86 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 307.04 15.07 4.63 4.63 Total: -1.00 -28.08 307.04 -9.20 -37.28 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.06 Total: 3.09 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.42 Total: -13.59 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -1.32 Total: -47.76 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.08 -9.20 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712527910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.549 kcal (2) G-P(sol) polarization free energy of solvation -28.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds