Wall clock time and date at job start Mon Mar 30 2020 03:11:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.53000 * 109.47628 * 2 1
4 4 H 1.08992 * 109.47738 * 180.76719 * 3 2 1
5 5 C 1.50702 * 109.46933 * 300.77083 * 3 2 1
6 6 H 1.08002 * 119.99913 * 119.99640 * 5 3 2
7 7 C 1.37879 * 119.99815 * 299.99319 * 5 3 2
8 8 N 1.31514 * 120.00278 * 0.02562 * 7 5 3
9 9 Si 1.86807 * 119.99649 * 180.02562 * 7 5 3
10 10 H 1.48492 * 109.47395 * 60.00252 * 9 7 5
11 11 H 1.48498 * 109.46656 * 180.02562 * 9 7 5
12 12 H 1.48498 * 109.47003 * 299.99698 * 9 7 5
13 13 N 1.46904 * 109.46750 * 60.76387 * 3 2 1
14 14 C 1.46902 * 110.99663 * 85.87520 * 13 3 2
15 15 C 1.52996 * 109.47151 * 175.67617 * 14 13 3
16 16 H 1.09006 * 112.95760 * 287.14524 * 15 14 13
17 17 C 1.53936 * 113.76204 * 155.49444 * 15 14 13
18 18 C 1.53936 * 86.34181 * 221.96533 * 17 15 14
19 19 N 1.47958 * 86.18339 * 23.71939 * 18 17 15
20 20 C 1.46904 * 111.00186 * 222.41985 * 19 18 17
21 21 C 1.52994 * 109.46911 * 269.35672 * 20 19 18
22 22 H 1.08997 * 109.47560 * 65.16659 * 1 2 3
23 23 H 1.08998 * 109.47461 * 185.17103 * 1 2 3
24 24 H 1.09001 * 109.46882 * 305.16707 * 1 2 3
25 25 H 1.09006 * 109.46831 * 240.00043 * 2 1 3
26 26 H 1.09003 * 109.47426 * 120.00312 * 2 1 3
27 27 H 0.96996 * 120.00014 * 179.97438 * 8 7 5
28 28 H 1.00902 * 110.99971 * 209.82706 * 13 3 2
29 29 H 1.08995 * 109.47129 * 295.67765 * 14 13 3
30 30 H 1.08998 * 109.47034 * 55.68114 * 14 13 3
31 31 H 1.08999 * 113.72818 * 336.32136 * 17 15 14
32 32 H 1.09000 * 113.73057 * 107.50084 * 17 15 14
33 33 H 1.08996 * 113.76239 * 138.03789 * 18 17 15
34 34 H 1.09003 * 113.75455 * 269.40222 * 18 17 15
35 35 H 1.09004 * 109.47110 * 29.35833 * 20 19 18
36 36 H 1.08998 * 109.46935 * 149.35685 * 20 19 18
37 37 H 1.08997 * 109.47363 * 179.97438 * 21 20 19
38 38 H 1.08994 * 109.47425 * 299.99923 * 21 20 19
39 39 H 1.09006 * 109.47151 * 60.00040 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1299 1.4425 -0.0138
5 6 1.5222 2.1584 -1.2208
6 1 0.9026 3.0360 -1.1099
7 6 1.8395 1.6929 -2.4793
8 7 2.5935 0.6240 -2.6143
9 14 1.1981 2.5808 -3.9926
10 1 1.6936 3.9806 -3.9924
11 1 1.6772 1.8858 -5.2143
12 1 -0.2868 2.5813 -3.9740
13 7 1.5655 2.1296 1.2086
14 6 2.4747 1.8955 2.3385
15 6 2.0082 2.7110 3.5460
16 1 2.1975 3.7789 3.4365
17 6 2.4667 2.1352 4.8979
18 6 1.0503 2.4610 5.4052
19 7 0.6331 2.3891 3.9875
20 6 -0.2949 3.4786 3.6559
21 6 -1.7328 3.0144 3.8961
22 1 -0.3634 0.4316 -0.9326
23 1 -0.3634 -1.0234 0.0926
24 1 -0.3633 0.5919 0.8401
25 1 1.8932 -0.5139 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 2.8164 0.2963 -3.4997
28 1 1.4456 3.1171 1.0396
29 1 2.4724 0.8357 2.5931
30 1 3.4839 2.2006 2.0620
31 1 2.6874 1.0682 4.8681
32 1 3.2518 2.7183 5.3794
33 1 0.6174 1.6802 6.0305
34 1 0.9578 3.4561 5.8403
35 1 -0.0817 4.3420 4.2862
36 1 -0.1722 3.7542 2.6085
37 1 -2.4214 3.8229 3.6505
38 1 -1.9460 2.1511 3.2658
39 1 -1.8555 2.7388 4.9436
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000712527910.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:22
Heat of formation + Delta-G solvation = 5.380426 kcal
Electronic energy + Delta-G solvation = -16518.163290 eV
Core-core repulsion = 14074.546058 eV
Total energy + Delta-G solvation = -2443.617232 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.86601 -37.85861 -34.53792 -33.51180 -32.47078 -29.28032 -27.97194 -27.14207
-25.02059 -23.63324 -22.67621 -20.87588 -20.49010 -18.33536 -17.09118 -16.86723
-16.23172 -15.99962 -15.64112 -15.07941 -14.74941 -14.42425 -13.96148 -13.78180
-13.68635 -13.20431 -13.04243 -12.80973 -12.71195 -12.55275 -12.38371 -12.12074
-11.99177 -11.80417 -11.60812 -11.40806 -11.36030 -11.09271 -10.75371 -10.51077
-9.50909 -8.86948 -8.07956 -6.20358 1.41796 1.43659 1.50649 2.42988
3.01071 3.20433 3.60484 3.77075 4.00824 4.20610 4.36465 4.43583
4.44678 4.57858 4.65705 4.69986 4.76716 4.84253 4.85533 4.98088
4.99211 5.01193 5.03083 5.21369 5.29643 5.34147 5.43272 5.45787
5.58250 5.70056 5.74322 5.83985 5.94438 6.30307 6.35303 6.55142
6.86584 7.08377 7.48510 8.97007
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.033320 B = 0.006927 C = 0.006554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 840.145342 B = 4041.189179 C = 4271.339505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C -0.094 4.094
3 C 0.223 3.777
4 H -0.040 1.040
5 C -0.523 4.523
6 H 0.056 0.944
7 C 0.016 3.984
8 N -0.918 5.918
9 Si 0.954 3.046
10 H -0.271 1.271
11 H -0.286 1.286
12 H -0.273 1.273
13 N -0.666 5.666
14 C 0.084 3.916
15 C 0.034 3.966
16 H 0.077 0.923
17 C -0.131 4.131
18 C 0.003 3.997
19 N -0.477 5.477
20 C 0.022 3.978
21 C -0.133 4.133
22 H 0.029 0.971
23 H 0.030 0.970
24 H 0.054 0.946
25 H 0.055 0.945
26 H 0.015 0.985
27 H 0.260 0.740
28 H 0.324 0.676
29 H 0.055 0.945
30 H 0.012 0.988
31 H 0.084 0.916
32 H 0.088 0.912
33 H 0.090 0.910
34 H 0.080 0.920
35 H 0.048 0.952
36 H 0.059 0.941
37 H 0.064 0.936
38 H 0.042 0.958
39 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.026 5.108 14.174 15.367
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.133 4.133
3 C 0.114 3.886
4 H -0.023 1.023
5 C -0.561 4.561
6 H 0.074 0.926
7 C -0.183 4.183
8 N -0.558 5.558
9 Si 0.780 3.220
10 H -0.197 1.197
11 H -0.211 1.211
12 H -0.198 1.198
13 N -0.295 5.295
14 C -0.046 4.046
15 C -0.075 4.075
16 H 0.095 0.905
17 C -0.169 4.169
18 C -0.125 4.125
19 N -0.200 5.200
20 C -0.107 4.107
21 C -0.190 4.190
22 H 0.048 0.952
23 H 0.049 0.951
24 H 0.073 0.927
25 H 0.073 0.927
26 H 0.034 0.966
27 H 0.069 0.931
28 H 0.141 0.859
29 H 0.073 0.927
30 H 0.030 0.970
31 H 0.103 0.897
32 H 0.107 0.893
33 H 0.108 0.892
34 H 0.098 0.902
35 H 0.066 0.934
36 H 0.077 0.923
37 H 0.083 0.917
38 H 0.062 0.938
39 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.731 3.909 13.951 14.961
hybrid contribution 1.000 1.494 -1.233 2.180
sum -2.731 5.403 12.718 14.086
Atomic orbital electron populations
1.21244 0.96051 0.98166 1.00478 1.21257 0.96207 0.97829 0.97980
1.18904 0.90475 0.92223 0.86959 1.02272 1.21431 1.31353 1.11932
0.91409 0.92593 1.25636 0.95306 0.95686 1.01652 1.70021 1.38078
1.24132 1.23525 0.85680 0.78803 0.78727 0.78833 1.19669 1.21147
1.19781 1.60558 1.48865 1.14763 1.05352 1.21801 0.92603 0.99279
0.90953 1.23435 0.91126 0.98092 0.94883 0.90475 1.23331 0.97402
1.02152 0.94039 1.23975 0.95002 1.01864 0.91706 1.68495 1.05131
1.40032 1.06391 1.22553 0.94602 0.92783 1.00762 1.21564 0.94985
1.01121 1.01379 0.95224 0.95115 0.92715 0.92685 0.96620 0.93054
0.85927 0.92689 0.96962 0.89720 0.89324 0.89170 0.90222 0.93404
0.92271 0.91717 0.93830 0.92460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -4.77 9.47 71.98 0.68 -4.09 16
2 C -0.09 -4.79 5.58 30.59 0.17 -4.62 16
3 C 0.22 11.51 2.30 44.17 0.10 11.61 16
4 H -0.04 -2.33 7.72 -2.39 -0.02 -2.35 16
5 C -0.52 -28.69 7.39 25.60 0.19 -28.50 16
6 H 0.06 3.02 7.60 -2.91 -0.02 2.99 16
7 C 0.02 0.90 5.30 84.66 0.45 1.35 16
8 N -0.92 -53.63 11.33 21.45 0.24 -53.39 16
9 Si 0.95 43.94 29.54 68.60 2.03 45.97 16
10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16
12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16
13 N -0.67 -28.41 5.45 -495.46 -2.70 -31.11 16
14 C 0.08 3.06 5.66 86.30 0.49 3.55 16
15 C 0.03 0.97 3.44 45.02 0.15 1.12 16
16 H 0.08 2.04 7.93 -2.38 -0.02 2.02 16
17 C -0.13 -2.86 7.84 31.24 0.25 -2.62 16
18 C 0.00 0.06 7.96 86.41 0.69 0.75 16
19 N -0.48 -13.35 5.90 -883.72 -5.21 -18.56 16
20 C 0.02 0.56 5.52 86.30 0.48 1.04 16
21 C -0.13 -3.21 10.22 71.98 0.74 -2.48 16
22 H 0.03 1.46 7.39 -2.39 -0.02 1.44 16
23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
24 H 0.05 2.50 7.47 -2.39 -0.02 2.48 16
25 H 0.05 3.12 6.09 -2.38 -0.01 3.10 16
26 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16
27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16
28 H 0.32 13.64 7.93 -89.69 -0.71 12.93 16
29 H 0.05 2.14 7.35 -2.39 -0.02 2.12 16
30 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16
31 H 0.08 1.96 7.94 -2.39 -0.02 1.95 16
32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
34 H 0.08 1.39 7.48 -2.39 -0.02 1.37 16
35 H 0.05 1.06 7.38 -2.38 -0.02 1.04 16
36 H 0.06 1.79 7.86 -2.39 -0.02 1.78 16
37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
39 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16
Total: -1.00 -60.17 307.04 -0.98 -61.15
By element:
Atomic # 1 Polarization: 18.55 SS G_CDS: 0.29 Total: 18.83 kcal
Atomic # 6 Polarization: -27.27 SS G_CDS: 4.38 Total: -22.89 kcal
Atomic # 7 Polarization: -95.39 SS G_CDS: -7.67 Total: -103.06 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -60.17 -0.98 -61.15 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000712527910.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.525 kcal
(2) G-P(sol) polarization free energy of solvation -60.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.360 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds