Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47628 * 2 1 4 4 H 1.08992 * 109.47738 * 180.76719 * 3 2 1 5 5 C 1.50702 * 109.46933 * 300.77083 * 3 2 1 6 6 H 1.08002 * 119.99913 * 119.99640 * 5 3 2 7 7 C 1.37879 * 119.99815 * 299.99319 * 5 3 2 8 8 N 1.31514 * 120.00278 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99649 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47395 * 60.00252 * 9 7 5 11 11 H 1.48498 * 109.46656 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47003 * 299.99698 * 9 7 5 13 13 N 1.46904 * 109.46750 * 60.76387 * 3 2 1 14 14 C 1.46902 * 110.99663 * 85.87520 * 13 3 2 15 15 C 1.52996 * 109.47151 * 175.67617 * 14 13 3 16 16 H 1.09006 * 112.95760 * 287.14524 * 15 14 13 17 17 C 1.53936 * 113.76204 * 155.49444 * 15 14 13 18 18 C 1.53936 * 86.34181 * 221.96533 * 17 15 14 19 19 N 1.47958 * 86.18339 * 23.71939 * 18 17 15 20 20 C 1.46904 * 111.00186 * 222.41985 * 19 18 17 21 21 C 1.52994 * 109.46911 * 269.35672 * 20 19 18 22 22 H 1.08997 * 109.47560 * 65.16659 * 1 2 3 23 23 H 1.08998 * 109.47461 * 185.17103 * 1 2 3 24 24 H 1.09001 * 109.46882 * 305.16707 * 1 2 3 25 25 H 1.09006 * 109.46831 * 240.00043 * 2 1 3 26 26 H 1.09003 * 109.47426 * 120.00312 * 2 1 3 27 27 H 0.96996 * 120.00014 * 179.97438 * 8 7 5 28 28 H 1.00902 * 110.99971 * 209.82706 * 13 3 2 29 29 H 1.08995 * 109.47129 * 295.67765 * 14 13 3 30 30 H 1.08998 * 109.47034 * 55.68114 * 14 13 3 31 31 H 1.08999 * 113.72818 * 336.32136 * 17 15 14 32 32 H 1.09000 * 113.73057 * 107.50084 * 17 15 14 33 33 H 1.08996 * 113.76239 * 138.03789 * 18 17 15 34 34 H 1.09003 * 113.75455 * 269.40222 * 18 17 15 35 35 H 1.09004 * 109.47110 * 29.35833 * 20 19 18 36 36 H 1.08998 * 109.46935 * 149.35685 * 20 19 18 37 37 H 1.08997 * 109.47363 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.47425 * 299.99923 * 21 20 19 39 39 H 1.09006 * 109.47151 * 60.00040 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0138 5 6 1.5222 2.1584 -1.2208 6 1 0.9026 3.0360 -1.1099 7 6 1.8395 1.6929 -2.4793 8 7 2.5935 0.6240 -2.6143 9 14 1.1981 2.5808 -3.9926 10 1 1.6936 3.9806 -3.9924 11 1 1.6772 1.8858 -5.2143 12 1 -0.2868 2.5813 -3.9740 13 7 1.5655 2.1296 1.2086 14 6 2.4747 1.8955 2.3385 15 6 2.0082 2.7110 3.5460 16 1 2.1975 3.7789 3.4365 17 6 2.4667 2.1352 4.8979 18 6 1.0503 2.4610 5.4052 19 7 0.6331 2.3891 3.9875 20 6 -0.2949 3.4786 3.6559 21 6 -1.7328 3.0144 3.8961 22 1 -0.3634 0.4316 -0.9326 23 1 -0.3634 -1.0234 0.0926 24 1 -0.3633 0.5919 0.8401 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.8164 0.2963 -3.4997 28 1 1.4456 3.1171 1.0396 29 1 2.4724 0.8357 2.5931 30 1 3.4839 2.2006 2.0620 31 1 2.6874 1.0682 4.8681 32 1 3.2518 2.7183 5.3794 33 1 0.6174 1.6802 6.0305 34 1 0.9578 3.4561 5.8403 35 1 -0.0817 4.3420 4.2862 36 1 -0.1722 3.7542 2.6085 37 1 -2.4214 3.8229 3.6505 38 1 -1.9460 2.1511 3.2658 39 1 -1.8555 2.7388 4.9436 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712527910.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = 5.380426 kcal Electronic energy + Delta-G solvation = -16518.163290 eV Core-core repulsion = 14074.546058 eV Total energy + Delta-G solvation = -2443.617232 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86601 -37.85861 -34.53792 -33.51180 -32.47078 -29.28032 -27.97194 -27.14207 -25.02059 -23.63324 -22.67621 -20.87588 -20.49010 -18.33536 -17.09118 -16.86723 -16.23172 -15.99962 -15.64112 -15.07941 -14.74941 -14.42425 -13.96148 -13.78180 -13.68635 -13.20431 -13.04243 -12.80973 -12.71195 -12.55275 -12.38371 -12.12074 -11.99177 -11.80417 -11.60812 -11.40806 -11.36030 -11.09271 -10.75371 -10.51077 -9.50909 -8.86948 -8.07956 -6.20358 1.41796 1.43659 1.50649 2.42988 3.01071 3.20433 3.60484 3.77075 4.00824 4.20610 4.36465 4.43583 4.44678 4.57858 4.65705 4.69986 4.76716 4.84253 4.85533 4.98088 4.99211 5.01193 5.03083 5.21369 5.29643 5.34147 5.43272 5.45787 5.58250 5.70056 5.74322 5.83985 5.94438 6.30307 6.35303 6.55142 6.86584 7.08377 7.48510 8.97007 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.006927 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.145342 B = 4041.189179 C = 4271.339505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.094 4.094 3 C 0.223 3.777 4 H -0.040 1.040 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.666 5.666 14 C 0.084 3.916 15 C 0.034 3.966 16 H 0.077 0.923 17 C -0.131 4.131 18 C 0.003 3.997 19 N -0.477 5.477 20 C 0.022 3.978 21 C -0.133 4.133 22 H 0.029 0.971 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.015 0.985 27 H 0.260 0.740 28 H 0.324 0.676 29 H 0.055 0.945 30 H 0.012 0.988 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 5.108 14.174 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.133 4.133 3 C 0.114 3.886 4 H -0.023 1.023 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.295 5.295 14 C -0.046 4.046 15 C -0.075 4.075 16 H 0.095 0.905 17 C -0.169 4.169 18 C -0.125 4.125 19 N -0.200 5.200 20 C -0.107 4.107 21 C -0.190 4.190 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.731 3.909 13.951 14.961 hybrid contribution 1.000 1.494 -1.233 2.180 sum -2.731 5.403 12.718 14.086 Atomic orbital electron populations 1.21244 0.96051 0.98166 1.00478 1.21257 0.96207 0.97829 0.97980 1.18904 0.90475 0.92223 0.86959 1.02272 1.21431 1.31353 1.11932 0.91409 0.92593 1.25636 0.95306 0.95686 1.01652 1.70021 1.38078 1.24132 1.23525 0.85680 0.78803 0.78727 0.78833 1.19669 1.21147 1.19781 1.60558 1.48865 1.14763 1.05352 1.21801 0.92603 0.99279 0.90953 1.23435 0.91126 0.98092 0.94883 0.90475 1.23331 0.97402 1.02152 0.94039 1.23975 0.95002 1.01864 0.91706 1.68495 1.05131 1.40032 1.06391 1.22553 0.94602 0.92783 1.00762 1.21564 0.94985 1.01121 1.01379 0.95224 0.95115 0.92715 0.92685 0.96620 0.93054 0.85927 0.92689 0.96962 0.89720 0.89324 0.89170 0.90222 0.93404 0.92271 0.91717 0.93830 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.77 9.47 71.98 0.68 -4.09 16 2 C -0.09 -4.79 5.58 30.59 0.17 -4.62 16 3 C 0.22 11.51 2.30 44.17 0.10 11.61 16 4 H -0.04 -2.33 7.72 -2.39 -0.02 -2.35 16 5 C -0.52 -28.69 7.39 25.60 0.19 -28.50 16 6 H 0.06 3.02 7.60 -2.91 -0.02 2.99 16 7 C 0.02 0.90 5.30 84.66 0.45 1.35 16 8 N -0.92 -53.63 11.33 21.45 0.24 -53.39 16 9 Si 0.95 43.94 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 N -0.67 -28.41 5.45 -495.46 -2.70 -31.11 16 14 C 0.08 3.06 5.66 86.30 0.49 3.55 16 15 C 0.03 0.97 3.44 45.02 0.15 1.12 16 16 H 0.08 2.04 7.93 -2.38 -0.02 2.02 16 17 C -0.13 -2.86 7.84 31.24 0.25 -2.62 16 18 C 0.00 0.06 7.96 86.41 0.69 0.75 16 19 N -0.48 -13.35 5.90 -883.72 -5.21 -18.56 16 20 C 0.02 0.56 5.52 86.30 0.48 1.04 16 21 C -0.13 -3.21 10.22 71.98 0.74 -2.48 16 22 H 0.03 1.46 7.39 -2.39 -0.02 1.44 16 23 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 2.50 7.47 -2.39 -0.02 2.48 16 25 H 0.05 3.12 6.09 -2.38 -0.01 3.10 16 26 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.32 13.64 7.93 -89.69 -0.71 12.93 16 29 H 0.05 2.14 7.35 -2.39 -0.02 2.12 16 30 H 0.01 0.47 7.95 -2.39 -0.02 0.45 16 31 H 0.08 1.96 7.94 -2.39 -0.02 1.95 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.39 7.48 -2.39 -0.02 1.37 16 35 H 0.05 1.06 7.38 -2.38 -0.02 1.04 16 36 H 0.06 1.79 7.86 -2.39 -0.02 1.78 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -60.17 307.04 -0.98 -61.15 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.29 Total: 18.83 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.38 Total: -22.89 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -7.67 Total: -103.06 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.17 -0.98 -61.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712527910.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.525 kcal (2) G-P(sol) polarization free energy of solvation -60.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds