Wall clock time and date at job start Mon Mar 30 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.09003 * 109.47458 * 306.27724 * 3 2 1 5 5 N 1.46903 * 109.47132 * 66.27657 * 3 2 1 6 6 C 1.46907 * 110.99570 * 209.01157 * 5 3 2 7 7 H 1.08997 * 109.47232 * 327.31073 * 6 5 3 8 8 C 1.50701 * 109.46739 * 87.31183 * 6 5 3 9 9 H 1.08000 * 120.00202 * 359.97438 * 8 6 5 10 10 C 1.37879 * 119.99761 * 179.97438 * 8 6 5 11 11 N 1.31513 * 120.00161 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 120.00165 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47188 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47457 * 120.00365 * 12 10 8 15 15 H 1.48506 * 109.47345 * 240.00454 * 12 10 8 16 16 C 1.52996 * 109.46613 * 207.30556 * 6 5 3 17 17 C 1.53005 * 109.47009 * 64.66184 * 16 6 5 18 18 C 1.53004 * 109.47125 * 186.27625 * 3 2 1 19 19 C 1.53934 * 113.73268 * 153.87273 * 18 3 2 20 20 N 1.48195 * 86.09899 * 221.95682 * 19 18 3 21 21 C 1.47959 * 90.79884 * 24.60114 * 20 19 18 22 22 H 1.08995 * 109.47160 * 174.49097 * 1 2 3 23 23 H 1.08993 * 109.47164 * 294.50005 * 1 2 3 24 24 H 1.08998 * 109.46817 * 54.49390 * 1 2 3 25 25 H 1.08991 * 109.46700 * 119.99921 * 2 1 3 26 26 H 1.08997 * 109.46751 * 239.99890 * 2 1 3 27 27 H 1.00894 * 110.99541 * 332.96588 * 5 3 2 28 28 H 0.96993 * 120.00430 * 179.97438 * 11 10 8 29 29 H 1.09005 * 109.46969 * 184.65283 * 16 6 5 30 30 H 1.08996 * 109.47711 * 304.65685 * 16 6 5 31 31 H 1.09001 * 109.46740 * 304.87531 * 17 16 6 32 32 H 1.09001 * 109.47425 * 64.87809 * 17 16 6 33 33 H 1.09003 * 109.47313 * 184.87936 * 17 16 6 34 34 H 1.08999 * 112.93399 * 285.43876 * 18 3 2 35 35 H 1.08994 * 113.76040 * 336.23318 * 19 18 3 36 36 H 1.08993 * 113.75831 * 107.60753 * 19 18 3 37 37 H 1.00898 * 111.06694 * 137.52036 * 20 19 18 38 38 H 1.09004 * 113.76240 * 221.08374 * 21 20 19 39 39 H 1.09004 * 113.86012 * 89.73446 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5879 1.9878 -0.8285 5 7 1.6779 2.0899 1.2680 6 6 1.5026 3.5374 1.0887 7 1 2.1856 3.8933 0.3173 8 6 0.0825 3.8237 0.6733 9 1 -0.6194 3.0116 0.5541 10 6 -0.3206 5.1224 0.4456 11 7 0.5343 6.1113 0.5903 12 14 -2.0806 5.4773 -0.0699 13 1 -2.8361 4.2023 -0.1620 14 1 -2.7225 6.3610 0.9362 15 1 -2.0825 6.1510 -1.3934 16 6 1.8029 4.2545 2.4064 17 6 3.2767 4.0596 2.7687 18 6 3.5619 1.4454 -0.1577 19 6 4.1166 2.7335 -0.7923 20 7 5.0085 1.8443 -1.5733 21 6 4.0549 0.7228 -1.4243 22 1 -0.3633 -1.0229 -0.0987 23 1 -0.3633 0.4261 0.9351 24 1 -0.3633 0.5969 -0.8366 25 1 1.8933 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 0.8495 1.6716 1.6638 28 1 0.2508 7.0249 0.4298 29 1 1.5934 5.3186 2.2969 30 1 1.1767 3.8403 3.1965 31 1 3.5069 2.9945 2.7931 32 1 3.9022 4.5496 2.0225 33 1 3.4707 4.4958 3.7486 34 1 4.0836 1.1439 0.7506 35 1 3.3899 3.2712 -1.4012 36 1 4.6436 3.3779 -0.0888 37 1 5.0673 2.1435 -2.5350 38 1 4.5327 -0.2365 -1.2249 39 1 3.3095 0.6695 -2.2179 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716156503.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:41 Heat of formation + Delta-G solvation = 11.423890 kcal Electronic energy + Delta-G solvation = -16926.690611 eV Core-core repulsion = 14483.335444 eV Total energy + Delta-G solvation = -2443.355168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35240 -36.29652 -33.90291 -31.66985 -29.99256 -28.14582 -25.97158 -25.61554 -23.67206 -22.55025 -20.36063 -19.53830 -18.83336 -16.70145 -15.82409 -15.48121 -14.72138 -14.37456 -14.03964 -13.19694 -13.13003 -12.89602 -12.47183 -12.32968 -12.21302 -11.77748 -11.31290 -11.25154 -11.05433 -10.83387 -10.78646 -10.58068 -10.49069 -10.29254 -10.06849 -9.83320 -9.54492 -9.29976 -8.99539 -8.61818 -8.34819 -7.21444 -5.99562 -4.12069 3.23808 3.32961 3.35447 4.38394 4.46768 4.88309 5.04863 5.25872 5.44335 5.52394 5.62918 5.69851 5.77545 5.87971 6.03212 6.12108 6.27601 6.31252 6.34530 6.36277 6.45044 6.47049 6.50483 6.58589 6.73321 6.77825 6.90567 7.18323 7.22453 7.50204 7.51762 7.63660 7.79713 8.13035 8.19397 8.37872 8.72109 9.02755 9.55533 11.00181 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.009646 C = 0.008508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.651920 B = 2902.099610 C = 3290.290496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.098 3.902 4 H 0.047 0.953 5 N -0.684 5.684 6 C 0.213 3.787 7 H 0.037 0.963 8 C -0.542 4.542 9 H 0.053 0.947 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.884 3.116 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.285 1.285 16 C -0.106 4.106 17 C -0.137 4.137 18 C -0.090 4.090 19 C 0.015 3.985 20 N -0.643 5.643 21 C 0.005 3.995 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.328 0.672 28 H 0.260 0.740 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.022 0.978 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.310 0.690 38 H 0.079 0.921 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -8.559 -2.306 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.013 4.013 4 H 0.065 0.935 5 N -0.315 5.315 6 C 0.105 3.895 7 H 0.055 0.945 8 C -0.581 4.581 9 H 0.072 0.928 10 C -0.135 4.135 11 N -0.523 5.523 12 Si 0.713 3.287 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.145 4.145 17 C -0.195 4.195 18 C -0.110 4.110 19 C -0.115 4.115 20 N -0.267 5.267 21 C -0.126 4.126 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.146 0.854 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.711 -8.469 -1.607 9.824 hybrid contribution -2.721 0.672 -1.412 3.138 sum 1.990 -7.797 -3.018 8.595 Atomic orbital electron populations 1.21792 0.96114 1.00516 1.02539 1.21675 0.95650 0.97286 1.01469 1.21423 0.92896 0.93118 0.93863 0.93497 1.60903 1.40827 1.06406 1.23318 1.19218 0.94568 0.81960 0.93715 0.94475 1.21941 0.97239 0.92584 1.46370 0.92837 1.24922 0.96950 0.96448 0.95214 1.69884 1.34053 0.99336 1.49014 0.86664 0.85553 0.78282 0.78229 1.19967 1.20997 1.21150 1.21492 0.92405 1.03284 0.97291 1.21714 0.99173 1.00531 0.98054 1.22958 0.96254 0.94782 0.96999 1.23778 0.94492 0.96066 0.97130 1.66939 1.38708 1.05848 1.15189 1.23741 0.94314 0.96422 0.98159 0.93562 0.92251 0.92759 0.91819 0.92460 0.85353 0.93014 0.89369 0.95324 0.93050 0.94657 0.95841 0.88583 0.91450 0.89701 0.87851 0.90253 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.67 37.16 0.36 -1.89 16 2 C -0.12 -1.80 5.35 -26.73 -0.14 -1.94 16 3 C 0.10 1.72 1.80 -67.71 -0.12 1.60 16 4 H 0.05 0.95 7.41 -51.93 -0.38 0.57 16 5 N -0.68 -13.62 5.43 -100.95 -0.55 -14.16 16 6 C 0.21 5.04 1.78 -68.86 -0.12 4.91 16 7 H 0.04 0.96 5.99 -51.93 -0.31 0.64 16 8 C -0.54 -14.13 8.40 -34.44 -0.29 -14.42 16 9 H 0.05 1.39 7.71 -52.49 -0.40 0.99 16 10 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 11 N -0.88 -24.56 11.29 55.43 0.63 -23.94 16 12 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 16 C -0.11 -2.51 5.45 -26.73 -0.15 -2.65 16 17 C -0.14 -2.82 9.86 37.16 0.37 -2.45 16 18 C -0.09 -1.47 3.62 -89.68 -0.32 -1.80 16 19 C 0.02 0.26 7.12 -2.63 -0.02 0.24 16 20 N -0.64 -9.65 8.53 -116.83 -1.00 -10.64 16 21 C 0.00 0.06 7.34 -2.76 -0.02 0.04 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.94 6.69 -51.93 -0.35 0.59 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.75 7.03 -51.93 -0.37 0.39 16 27 H 0.33 6.58 6.24 -39.30 -0.25 6.33 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.09 2.34 5.96 -51.93 -0.31 2.03 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 1.02 7.61 -51.93 -0.40 0.62 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.07 1.24 7.56 -51.93 -0.39 0.85 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.31 4.13 8.92 -39.29 -0.35 3.78 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -26.53 302.43 -8.79 -35.32 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.86 Total: 9.67 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -0.55 Total: -16.66 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.92 Total: -48.74 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.53 -8.79 -35.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716156503.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.746 kcal (2) G-P(sol) polarization free energy of solvation -26.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds