Wall clock time and date at job start Mon Mar 30 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47731 * 2 1 4 4 H 1.09002 * 109.47170 * 57.49985 * 3 2 1 5 5 C 1.50702 * 109.47480 * 177.50426 * 3 2 1 6 6 H 1.08005 * 119.99542 * 120.00004 * 5 3 2 7 7 C 1.37874 * 119.99964 * 299.99886 * 5 3 2 8 8 N 1.31512 * 120.00120 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47423 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46870 * 119.99854 * 9 7 5 12 12 H 1.48501 * 109.47129 * 239.99800 * 9 7 5 13 13 N 1.46909 * 109.46717 * 297.50596 * 3 2 1 14 14 C 1.46900 * 110.99776 * 156.25607 * 13 3 2 15 15 H 1.08997 * 109.47566 * 34.58392 * 14 13 3 16 16 C 1.53003 * 109.47127 * 154.58910 * 14 13 3 17 17 C 1.52998 * 109.47070 * 293.94267 * 16 14 13 18 18 C 1.53002 * 109.46862 * 274.58673 * 14 13 3 19 19 C 1.53516 * 114.16961 * 180.02562 * 18 14 13 20 20 N 1.47483 * 87.93163 * 139.67138 * 19 18 14 21 21 C 1.47483 * 87.83784 * 332.99136 * 20 19 18 22 22 H 1.08999 * 109.46916 * 305.10707 * 1 2 3 23 23 H 1.09003 * 109.46629 * 65.10077 * 1 2 3 24 24 H 1.08991 * 109.47164 * 185.10371 * 1 2 3 25 25 H 1.09000 * 109.47254 * 239.99459 * 2 1 3 26 26 H 1.09003 * 109.46773 * 119.99903 * 2 1 3 27 27 H 0.96995 * 119.99805 * 179.97438 * 8 7 5 28 28 H 1.00898 * 110.99587 * 280.20180 * 13 3 2 29 29 H 1.09000 * 109.47136 * 53.93942 * 16 14 13 30 30 H 1.08996 * 109.46949 * 173.94081 * 16 14 13 31 31 H 1.09001 * 109.47019 * 186.21597 * 17 16 14 32 32 H 1.09007 * 109.46916 * 306.21381 * 17 16 14 33 33 H 1.09000 * 109.47285 * 66.20916 * 17 16 14 34 34 H 1.08999 * 113.38572 * 46.92690 * 18 14 13 35 35 H 1.09002 * 113.47665 * 24.90589 * 19 18 14 36 36 H 1.08998 * 113.47869 * 254.43741 * 19 18 14 37 37 H 1.00897 * 111.00107 * 84.68330 * 20 19 18 38 38 H 1.08997 * 113.47704 * 141.77682 * 21 20 19 39 39 H 1.09003 * 113.47457 * 272.24857 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6407 1.9691 0.8667 5 6 3.5459 1.4428 0.0619 6 1 4.1188 1.8988 -0.7321 7 6 4.1920 0.8610 1.1319 8 7 3.4943 0.3062 2.0989 9 14 6.0584 0.8609 1.2082 10 1 6.6030 1.5435 0.0070 11 1 6.5039 1.5788 2.4294 12 1 6.5521 -0.5390 1.2491 13 7 1.6003 2.1173 -1.2285 14 6 1.5577 3.5738 -1.0426 15 1 2.3635 3.8786 -0.3749 16 6 1.7279 4.2660 -2.3965 17 6 3.1326 3.9908 -2.9369 18 6 0.2120 3.9709 -0.4324 19 6 0.0514 5.4786 -0.1918 20 7 -1.3404 5.3512 -0.6627 21 6 -0.9047 4.1912 -1.4625 22 1 -0.3633 0.5910 0.8407 23 1 -0.3633 0.4327 -0.9322 24 1 -0.3633 -1.0235 0.0914 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9489 -0.1033 2.8515 28 1 2.1906 1.8694 -2.0083 29 1 0.9872 3.8807 -3.0972 30 1 1.5892 5.3403 -2.2753 31 1 3.2927 4.5719 -3.8452 32 1 3.8721 4.2755 -2.1884 33 1 3.2337 2.9291 -3.1622 34 1 -0.0789 3.3500 0.4149 35 1 0.6756 6.0911 -0.8424 36 1 0.1305 5.7616 0.8578 37 1 -1.9511 5.0643 0.0875 38 1 -1.6359 3.3834 -1.4897 39 1 -0.5356 4.4602 -2.4522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716156505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:44 Heat of formation + Delta-G solvation = 21.298944 kcal Electronic energy + Delta-G solvation = -16837.337751 eV Core-core repulsion = 14394.410798 eV Total energy + Delta-G solvation = -2442.926953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84162 -36.37819 -33.84825 -31.68627 -30.03863 -28.04258 -25.96843 -25.47910 -23.46788 -22.60867 -21.43753 -19.47787 -18.36987 -16.64370 -16.19984 -15.16600 -14.80842 -14.37598 -14.06978 -13.24430 -13.18908 -12.92453 -12.49887 -12.45654 -12.09529 -11.94497 -11.33076 -11.29004 -11.19348 -11.00270 -10.91275 -10.63126 -10.44565 -10.32399 -9.95638 -9.80898 -9.57061 -9.44747 -9.06643 -8.38557 -8.33842 -7.20099 -6.00354 -4.13118 3.23934 3.32883 3.35570 4.38066 4.44140 4.77455 5.13313 5.24204 5.36921 5.41848 5.57825 5.64591 5.82463 5.94230 5.97441 6.08252 6.14373 6.18817 6.31167 6.34544 6.39362 6.46064 6.48821 6.59715 6.70759 6.73147 6.82115 7.12877 7.15944 7.45326 7.47933 7.60487 7.77446 8.09325 8.18082 8.35327 8.69716 9.00891 9.54754 10.99439 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.008819 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.354821 B = 3174.093459 C = 3613.421412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.102 3.898 15 H 0.050 0.950 16 C -0.125 4.125 17 C -0.153 4.153 18 C -0.134 4.134 19 C 0.010 3.990 20 N -0.659 5.659 21 C 0.019 3.981 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.023 0.977 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.331 0.669 38 H 0.063 0.937 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 6.048 -5.541 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.314 5.314 14 C -0.009 4.009 15 H 0.067 0.933 16 C -0.163 4.163 17 C -0.210 4.210 18 C -0.155 4.155 19 C -0.120 4.120 20 N -0.285 5.285 21 C -0.111 4.111 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.772 6.539 -5.772 10.459 hybrid contribution 2.323 -0.738 0.938 2.611 sum -3.449 5.802 -4.835 8.303 Atomic orbital electron populations 1.21673 0.99072 0.98114 1.00281 1.21495 0.91970 0.99415 1.01611 1.19150 0.92237 0.90859 0.86969 0.95174 1.21921 0.92736 1.37178 1.06300 0.92797 1.24930 0.97902 0.95097 0.95620 1.69885 1.34839 1.37762 1.09896 0.86643 0.86346 0.77734 0.77881 1.19937 1.21116 1.20992 1.60932 1.57265 1.04569 1.08626 1.21190 0.94848 0.90250 0.94620 0.93254 1.21808 0.97047 0.99858 0.97545 1.21800 0.97234 1.01738 1.00238 1.23909 0.97125 0.95425 0.98999 1.23669 0.91358 0.96749 1.00268 1.65581 1.08141 1.34674 1.20061 1.23646 0.96438 0.92310 0.98719 0.94704 0.93399 0.95818 0.95171 0.89358 0.93007 0.85380 0.91528 0.92222 0.93519 0.92704 0.92341 0.89013 0.88733 0.91920 0.85586 0.91848 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.71 37.16 0.36 -2.35 16 2 C -0.11 -2.50 5.44 -26.73 -0.15 -2.65 16 3 C 0.22 5.14 1.82 -68.86 -0.13 5.01 16 4 H 0.03 0.81 7.30 -51.93 -0.38 0.43 16 5 C -0.54 -14.20 8.20 -34.44 -0.28 -14.49 16 6 H 0.05 1.41 7.76 -52.48 -0.41 1.00 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.89 -24.72 11.30 55.43 0.63 -24.10 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -13.50 5.49 -100.95 -0.55 -14.05 16 14 C 0.10 1.79 2.03 -67.71 -0.14 1.65 16 15 H 0.05 1.01 7.58 -51.93 -0.39 0.62 16 16 C -0.12 -1.82 4.27 -26.73 -0.11 -1.94 16 17 C -0.15 -2.23 9.64 37.16 0.36 -1.88 16 18 C -0.13 -2.14 4.03 -90.08 -0.36 -2.50 16 19 C 0.01 0.14 8.03 -7.53 -0.06 0.08 16 20 N -0.66 -9.06 8.76 -122.61 -1.07 -10.13 16 21 C 0.02 0.26 7.86 -7.53 -0.06 0.20 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.92 7.83 -51.93 -0.41 0.51 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 2.33 6.01 -51.93 -0.31 2.02 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.33 6.53 6.35 -39.29 -0.25 6.28 16 29 H 0.07 0.94 6.60 -51.93 -0.34 0.60 16 30 H 0.06 0.80 6.30 -51.93 -0.33 0.48 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 33 H 0.06 0.90 6.69 -51.93 -0.35 0.55 16 34 H 0.09 1.66 7.66 -51.93 -0.40 1.26 16 35 H 0.09 1.29 6.36 -51.93 -0.33 0.96 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.33 4.16 8.85 -39.29 -0.35 3.81 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.37 5.59 -51.93 -0.29 1.08 16 LS Contribution 298.92 15.07 4.50 4.50 Total: -1.00 -26.58 298.92 -8.81 -35.39 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.63 Total: 9.60 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.66 Total: -17.14 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.00 Total: -48.28 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.58 -8.81 -35.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716156505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.689 kcal (2) G-P(sol) polarization free energy of solvation -26.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds