Wall clock time and date at job start Mon Mar 30 2020 03:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47731 * 2 1 4 4 H 1.09002 * 109.47170 * 57.49985 * 3 2 1 5 5 C 1.50702 * 109.47480 * 177.50426 * 3 2 1 6 6 H 1.08005 * 119.99542 * 120.00004 * 5 3 2 7 7 C 1.37874 * 119.99964 * 299.99886 * 5 3 2 8 8 N 1.31512 * 120.00120 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47423 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46870 * 119.99854 * 9 7 5 12 12 H 1.48501 * 109.47129 * 239.99800 * 9 7 5 13 13 N 1.46909 * 109.46717 * 297.50596 * 3 2 1 14 14 C 1.46900 * 110.99776 * 156.25607 * 13 3 2 15 15 H 1.08997 * 109.47566 * 34.58392 * 14 13 3 16 16 C 1.53003 * 109.47127 * 154.58910 * 14 13 3 17 17 C 1.52998 * 109.47070 * 293.94267 * 16 14 13 18 18 C 1.53002 * 109.46862 * 274.58673 * 14 13 3 19 19 C 1.53516 * 114.16961 * 180.02562 * 18 14 13 20 20 N 1.47483 * 87.93163 * 139.67138 * 19 18 14 21 21 C 1.47483 * 87.83784 * 332.99136 * 20 19 18 22 22 H 1.08999 * 109.46916 * 305.10707 * 1 2 3 23 23 H 1.09003 * 109.46629 * 65.10077 * 1 2 3 24 24 H 1.08991 * 109.47164 * 185.10371 * 1 2 3 25 25 H 1.09000 * 109.47254 * 239.99459 * 2 1 3 26 26 H 1.09003 * 109.46773 * 119.99903 * 2 1 3 27 27 H 0.96995 * 119.99805 * 179.97438 * 8 7 5 28 28 H 1.00898 * 110.99587 * 280.20180 * 13 3 2 29 29 H 1.09000 * 109.47136 * 53.93942 * 16 14 13 30 30 H 1.08996 * 109.46949 * 173.94081 * 16 14 13 31 31 H 1.09001 * 109.47019 * 186.21597 * 17 16 14 32 32 H 1.09007 * 109.46916 * 306.21381 * 17 16 14 33 33 H 1.09000 * 109.47285 * 66.20916 * 17 16 14 34 34 H 1.08999 * 113.38572 * 46.92690 * 18 14 13 35 35 H 1.09002 * 113.47665 * 24.90589 * 19 18 14 36 36 H 1.08998 * 113.47869 * 254.43741 * 19 18 14 37 37 H 1.00897 * 111.00107 * 84.68330 * 20 19 18 38 38 H 1.08997 * 113.47704 * 141.77682 * 21 20 19 39 39 H 1.09003 * 113.47457 * 272.24857 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6407 1.9691 0.8667 5 6 3.5459 1.4428 0.0619 6 1 4.1188 1.8988 -0.7321 7 6 4.1920 0.8610 1.1319 8 7 3.4943 0.3062 2.0989 9 14 6.0584 0.8609 1.2082 10 1 6.6030 1.5435 0.0070 11 1 6.5039 1.5788 2.4294 12 1 6.5521 -0.5390 1.2491 13 7 1.6003 2.1173 -1.2285 14 6 1.5577 3.5738 -1.0426 15 1 2.3635 3.8786 -0.3749 16 6 1.7279 4.2660 -2.3965 17 6 3.1326 3.9908 -2.9369 18 6 0.2120 3.9709 -0.4324 19 6 0.0514 5.4786 -0.1918 20 7 -1.3404 5.3512 -0.6627 21 6 -0.9047 4.1912 -1.4625 22 1 -0.3633 0.5910 0.8407 23 1 -0.3633 0.4327 -0.9322 24 1 -0.3633 -1.0235 0.0914 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9489 -0.1033 2.8515 28 1 2.1906 1.8694 -2.0083 29 1 0.9872 3.8807 -3.0972 30 1 1.5892 5.3403 -2.2753 31 1 3.2927 4.5719 -3.8452 32 1 3.8721 4.2755 -2.1884 33 1 3.2337 2.9291 -3.1622 34 1 -0.0789 3.3500 0.4149 35 1 0.6756 6.0911 -0.8424 36 1 0.1305 5.7616 0.8578 37 1 -1.9511 5.0643 0.0875 38 1 -1.6359 3.3834 -1.4897 39 1 -0.5356 4.4602 -2.4522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716156505.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:44 Heat of formation + Delta-G solvation = 2.781102 kcal Electronic energy + Delta-G solvation = -16838.140745 eV Core-core repulsion = 14394.410798 eV Total energy + Delta-G solvation = -2443.729947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08273 -38.01274 -35.46327 -33.61585 -31.57743 -29.46583 -27.77259 -26.65692 -24.98372 -24.21557 -22.73766 -21.35028 -19.68907 -18.63749 -17.35701 -16.90302 -16.35499 -15.92035 -15.54653 -14.83103 -14.78239 -14.40133 -13.93951 -13.80952 -13.47081 -13.24889 -13.13731 -13.09387 -12.84060 -12.59803 -12.43556 -12.20235 -12.13288 -11.64369 -11.55647 -11.37901 -11.16134 -11.11108 -10.93365 -10.45159 -9.54830 -8.92838 -8.03923 -6.26026 1.34527 1.37931 1.47074 2.39075 3.14949 3.29846 3.45641 3.88410 4.08941 4.13247 4.31085 4.37363 4.61097 4.62178 4.75317 4.76814 4.80338 4.87281 4.91653 4.96146 5.02727 5.07018 5.12526 5.16933 5.24385 5.34039 5.41621 5.45146 5.51596 5.55250 5.66808 5.80076 6.14509 6.24173 6.39097 6.45241 6.90468 7.08222 7.45703 8.91549 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.008819 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.354821 B = 3174.093459 C = 3613.421412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.227 3.773 4 H -0.004 1.004 5 C -0.552 4.552 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.672 5.672 14 C 0.104 3.896 15 H 0.013 0.987 16 C -0.115 4.115 17 C -0.151 4.151 18 C -0.141 4.141 19 C 0.018 3.982 20 N -0.655 5.655 21 C 0.029 3.971 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.337 0.663 38 H 0.065 0.935 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 6.972 -7.025 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.118 3.882 4 H 0.014 0.986 5 C -0.591 4.591 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.302 5.302 14 C -0.007 4.007 15 H 0.031 0.969 16 C -0.153 4.153 17 C -0.208 4.208 18 C -0.162 4.162 19 C -0.113 4.113 20 N -0.280 5.280 21 C -0.100 4.100 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.151 7.473 -7.265 12.102 hybrid contribution 2.425 -1.004 1.409 2.979 sum -3.725 6.469 -5.856 9.488 Atomic orbital electron populations 1.21513 0.96376 0.99250 1.00594 1.21360 0.94355 0.98660 0.99816 1.18863 0.90921 0.91062 0.87389 0.98621 1.22228 0.94171 1.36634 1.06086 0.93164 1.25641 1.01904 0.95050 0.95505 1.70015 1.36287 1.38503 1.10354 0.85707 0.81599 0.77695 0.77824 1.19406 1.21021 1.20663 1.60882 1.56461 1.06012 1.06823 1.21237 0.94632 0.88881 0.95995 0.96896 1.21748 0.97384 1.00542 0.95599 1.21783 0.96721 1.01434 1.00898 1.23860 0.96864 0.96523 0.98939 1.23657 0.91712 0.95110 1.00818 1.65600 1.07834 1.34311 1.20303 1.23614 0.95395 0.92462 0.98575 0.95369 0.92171 0.94056 0.95497 0.92484 0.93082 0.85329 0.90192 0.90426 0.90801 0.94503 0.93472 0.91733 0.87700 0.91672 0.84845 0.91682 0.87245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.71 71.98 0.70 -4.08 16 2 C -0.10 -4.92 5.44 30.59 0.17 -4.76 16 3 C 0.23 11.06 1.82 44.17 0.08 11.14 16 4 H 0.00 -0.23 7.30 -2.39 -0.02 -0.25 16 5 C -0.55 -29.50 8.20 25.60 0.21 -29.29 16 6 H 0.05 2.66 7.76 -2.91 -0.02 2.64 16 7 C 0.02 1.02 5.30 84.65 0.45 1.47 16 8 N -0.91 -52.20 11.30 21.45 0.24 -51.96 16 9 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.67 -26.54 5.49 -473.29 -2.60 -29.14 16 14 C 0.10 3.61 2.03 44.92 0.09 3.70 16 15 H 0.01 0.55 7.58 -2.39 -0.02 0.53 16 16 C -0.12 -3.12 4.27 30.59 0.13 -2.99 16 17 C -0.15 -4.16 9.64 71.98 0.69 -3.47 16 18 C -0.14 -4.42 4.03 -10.45 -0.04 -4.47 16 19 C 0.02 0.47 8.03 83.58 0.67 1.14 16 20 N -0.65 -16.52 8.76 -541.84 -4.75 -21.27 16 21 C 0.03 0.76 7.86 83.58 0.66 1.42 16 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 2.23 7.83 -2.39 -0.02 2.21 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 3.09 6.01 -2.39 -0.01 3.08 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.33 12.95 6.35 -89.70 -0.57 12.38 16 29 H 0.08 2.00 6.60 -2.39 -0.02 1.98 16 30 H 0.08 1.86 6.30 -2.39 -0.02 1.84 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.05 1.39 6.69 -2.39 -0.02 1.38 16 34 H 0.06 2.38 7.66 -2.39 -0.02 2.36 16 35 H 0.10 2.59 6.36 -2.39 -0.02 2.57 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.34 7.86 8.85 -89.70 -0.79 7.07 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.67 5.59 -2.39 -0.01 2.66 16 Total: -1.00 -57.29 298.92 -1.60 -58.90 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.33 Total: 28.20 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.81 Total: -30.19 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -7.10 Total: -102.37 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -57.29 -1.60 -58.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716156505.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.678 kcal (2) G-P(sol) polarization free energy of solvation -57.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds