Wall clock time and date at job start Mon Mar 30 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46750 * 2 1 4 4 H 1.09001 * 109.46999 * 305.62230 * 3 2 1 5 5 C 1.50702 * 109.47016 * 185.62174 * 3 2 1 6 6 H 1.07998 * 120.00478 * 245.01917 * 5 3 2 7 7 C 1.37880 * 119.99848 * 65.01798 * 5 3 2 8 8 N 1.31513 * 120.00139 * 7.77958 * 7 5 3 9 9 Si 1.86802 * 119.99976 * 187.77939 * 7 5 3 10 10 H 1.48504 * 109.46915 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47113 * 299.99851 * 9 7 5 12 12 H 1.48494 * 109.47036 * 60.00170 * 9 7 5 13 13 N 1.46902 * 109.47096 * 65.62548 * 3 2 1 14 14 C 1.46898 * 110.99982 * 204.82924 * 13 3 2 15 15 H 1.09003 * 110.28432 * 322.09258 * 14 13 3 16 16 C 1.54256 * 110.32585 * 84.22231 * 14 13 3 17 17 C 1.54381 * 105.06168 * 118.89708 * 16 14 13 18 18 N 1.48564 * 104.59218 * 23.85138 * 17 16 14 19 19 C 1.46901 * 110.99935 * 200.96082 * 18 17 16 20 20 C 1.48555 * 104.22216 * 320.51963 * 18 17 16 21 21 H 1.09005 * 110.41306 * 280.70097 * 20 18 17 22 22 C 1.53005 * 110.41205 * 158.26272 * 20 18 17 23 23 H 1.09001 * 109.47375 * 62.12120 * 1 2 3 24 24 H 1.09000 * 109.46718 * 182.11623 * 1 2 3 25 25 H 1.09000 * 109.46958 * 302.11397 * 1 2 3 26 26 H 1.08997 * 109.47068 * 240.00718 * 2 1 3 27 27 H 1.08999 * 109.47781 * 119.99999 * 2 1 3 28 28 H 0.96998 * 120.00034 * 357.91158 * 8 7 5 29 29 H 1.00896 * 110.99655 * 328.77985 * 13 3 2 30 30 H 1.09003 * 110.32534 * 237.79402 * 16 14 13 31 31 H 1.09001 * 110.32162 * 359.89601 * 16 14 13 32 32 H 1.08995 * 110.41390 * 142.63224 * 17 16 14 33 33 H 1.08999 * 110.41036 * 265.08046 * 17 16 14 34 34 H 1.09004 * 109.47116 * 60.12672 * 19 18 17 35 35 H 1.08999 * 109.47178 * 180.13039 * 19 18 17 36 36 H 1.08999 * 109.47157 * 300.13073 * 19 18 17 37 37 H 1.08998 * 109.46764 * 304.82932 * 22 20 18 38 38 H 1.09002 * 109.47031 * 64.82400 * 22 20 18 39 39 H 1.09001 * 109.47257 * 184.82467 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4450 -0.1392 6 1 4.1571 1.8129 0.6675 7 6 4.1262 0.9773 -1.2965 8 7 3.3791 0.6731 -2.3351 9 14 5.9810 0.7759 -1.3891 10 1 6.3566 0.2608 -2.7304 11 1 6.6336 2.0904 -1.1626 12 1 6.4272 -0.1843 -0.3480 13 7 1.6642 2.0948 1.2616 14 6 1.5875 3.5526 1.0981 15 1 2.3793 3.9007 0.4347 16 6 0.2066 3.9576 0.5427 17 6 -0.4104 4.8678 1.6264 18 7 0.7564 5.4045 2.3731 19 6 0.3574 5.8731 3.7070 20 6 1.6888 4.2521 2.4705 21 1 1.3756 3.5758 3.2660 22 6 3.1177 4.7411 2.7161 23 1 -0.3634 0.4805 -0.9084 24 1 -0.3633 -1.0270 0.0379 25 1 -0.3633 0.5463 0.8704 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.4138 0.7489 -2.2771 29 1 0.7948 1.7243 1.6151 30 1 0.3205 4.5060 -0.3924 31 1 -0.4138 3.0745 0.3897 32 1 -0.9731 5.6797 1.1657 33 1 -1.0521 4.2878 2.2897 34 1 -0.0652 5.0426 4.2725 35 1 1.2300 6.2630 4.2311 36 1 -0.3886 6.6615 3.6070 37 1 3.3987 5.4484 1.9358 38 1 3.1718 5.2319 3.6879 39 1 3.8004 3.8916 2.6995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719583240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:33 Heat of formation + Delta-G solvation = -6.428119 kcal Electronic energy + Delta-G solvation = -16782.763142 eV Core-core repulsion = 14338.633853 eV Total energy + Delta-G solvation = -2444.129289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14368 -36.16707 -32.87952 -31.49104 -31.02561 -29.38698 -26.13040 -24.82419 -24.14442 -22.84898 -20.70520 -19.90637 -19.47335 -16.62414 -15.65872 -15.37754 -14.71012 -14.36264 -13.88772 -13.68466 -13.34042 -13.08304 -12.57240 -12.44980 -12.25720 -12.02145 -11.51661 -11.37642 -11.22126 -11.12798 -10.88513 -10.70136 -10.61575 -10.45889 -10.23404 -10.04006 -9.90540 -9.72617 -8.62727 -8.34390 -8.30359 -7.26876 -6.26255 -3.96841 3.48171 3.50058 3.68442 4.16358 4.57773 4.92008 4.95825 5.28673 5.31553 5.41658 5.47636 5.52638 5.67776 5.75012 5.81130 5.88707 5.89486 5.95230 5.97955 6.13819 6.18681 6.22527 6.29651 6.43475 6.60330 6.61077 6.74772 6.81402 6.92002 6.98655 7.21265 7.25677 7.41420 8.07220 8.16822 8.50353 8.72715 8.98343 9.72923 11.08749 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.008439 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.541633 B = 3316.999298 C = 3963.843533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.209 3.791 4 H -0.005 1.005 5 C -0.575 4.575 6 H 0.055 0.945 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 1.067 2.933 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.672 5.672 14 C 0.100 3.900 15 H 0.094 0.906 16 C -0.156 4.156 17 C 0.036 3.964 18 N -0.516 5.516 19 C 0.017 3.983 20 C 0.069 3.931 21 H 0.052 0.948 22 C -0.127 4.127 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.269 0.731 29 H 0.314 0.686 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 6.193 8.519 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.102 3.898 4 H 0.013 0.987 5 C -0.614 4.614 6 H 0.074 0.926 7 C -0.188 4.188 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.302 5.302 14 C -0.012 4.012 15 H 0.112 0.888 16 C -0.196 4.196 17 C -0.092 4.092 18 N -0.240 5.240 19 C -0.132 4.132 20 C -0.039 4.039 21 H 0.070 0.930 22 C -0.185 4.185 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.303 6.204 7.482 10.629 hybrid contribution -2.631 -0.140 1.007 2.821 sum -6.934 6.064 8.489 12.526 Atomic orbital electron populations 1.21902 0.98973 1.00008 1.00113 1.21849 0.91951 1.00747 1.02173 1.19249 0.96362 0.89130 0.85097 0.98739 1.21952 0.90774 1.44980 1.03698 0.92639 1.25747 1.06761 0.94182 0.92088 1.70815 1.07231 1.47032 1.30311 0.83572 0.74594 0.76482 0.75811 1.21028 1.21573 1.21529 1.60640 1.35507 1.01767 1.32307 1.22225 0.95380 0.89221 0.94394 0.88822 1.23124 0.98652 0.99130 0.98698 1.23024 0.92890 0.97412 0.95849 1.65335 1.11407 1.31931 1.15332 1.22468 1.00787 0.99519 0.90476 1.22664 0.93523 0.89971 0.97756 0.92959 1.21607 0.95089 1.01408 1.00402 0.93746 0.93990 0.94077 0.90998 0.92932 0.92023 0.86752 0.91329 0.91739 0.90769 0.94415 0.95758 0.91402 0.91840 0.92256 0.93910 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.78 37.16 0.36 -2.44 16 2 C -0.13 -2.91 5.20 -26.73 -0.14 -3.05 16 3 C 0.21 5.08 1.51 -68.86 -0.10 4.98 16 4 H 0.00 -0.13 7.07 -51.93 -0.37 -0.50 16 5 C -0.58 -15.91 8.44 -34.44 -0.29 -16.20 16 6 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 7 C 0.02 0.44 5.18 -17.82 -0.09 0.35 16 8 N -0.92 -27.16 12.99 55.43 0.72 -26.44 16 9 Si 1.07 25.33 29.91 -169.99 -5.08 20.25 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.67 -14.01 6.01 -99.50 -0.60 -14.61 16 14 C 0.10 1.90 2.71 -66.34 -0.18 1.72 16 15 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16 16 C -0.16 -2.61 6.36 -25.35 -0.16 -2.77 16 17 C 0.04 0.52 6.49 -2.18 -0.01 0.51 16 18 N -0.52 -7.70 5.34 -230.34 -1.23 -8.93 16 19 C 0.02 0.20 9.42 60.07 0.57 0.77 16 20 C 0.07 1.15 2.60 -66.07 -0.17 0.98 16 21 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16 22 C -0.13 -2.04 9.32 37.16 0.35 -1.70 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.69 6.39 -51.93 -0.33 0.35 16 26 H 0.07 1.81 6.24 -51.93 -0.32 1.49 16 27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.27 7.89 5.99 -40.82 -0.24 7.65 16 29 H 0.31 6.02 6.05 -39.29 -0.24 5.78 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.51 7.97 -51.93 -0.41 0.09 16 34 H 0.02 0.28 7.97 -51.93 -0.41 -0.13 16 35 H 0.07 0.78 7.62 -51.93 -0.40 0.38 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -28.79 301.43 -8.43 -37.23 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.91 Total: 4.82 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 0.12 Total: -16.85 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -1.11 Total: -49.98 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.79 -8.43 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719583240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.798 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds