Wall clock time and date at job start Mon Mar 30 2020 03:12:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46750 * 2 1
4 4 H 1.09001 * 109.46999 * 305.62230 * 3 2 1
5 5 C 1.50702 * 109.47016 * 185.62174 * 3 2 1
6 6 H 1.07998 * 120.00478 * 245.01917 * 5 3 2
7 7 C 1.37880 * 119.99848 * 65.01798 * 5 3 2
8 8 N 1.31513 * 120.00139 * 7.77958 * 7 5 3
9 9 Si 1.86802 * 119.99976 * 187.77939 * 7 5 3
10 10 H 1.48504 * 109.46915 * 179.97438 * 9 7 5
11 11 H 1.48497 * 109.47113 * 299.99851 * 9 7 5
12 12 H 1.48494 * 109.47036 * 60.00170 * 9 7 5
13 13 N 1.46902 * 109.47096 * 65.62548 * 3 2 1
14 14 C 1.46898 * 110.99982 * 204.82924 * 13 3 2
15 15 H 1.09003 * 110.28432 * 322.09258 * 14 13 3
16 16 C 1.54256 * 110.32585 * 84.22231 * 14 13 3
17 17 C 1.54381 * 105.06168 * 118.89708 * 16 14 13
18 18 N 1.48564 * 104.59218 * 23.85138 * 17 16 14
19 19 C 1.46901 * 110.99935 * 200.96082 * 18 17 16
20 20 C 1.48555 * 104.22216 * 320.51963 * 18 17 16
21 21 H 1.09005 * 110.41306 * 280.70097 * 20 18 17
22 22 C 1.53005 * 110.41205 * 158.26272 * 20 18 17
23 23 H 1.09001 * 109.47375 * 62.12120 * 1 2 3
24 24 H 1.09000 * 109.46718 * 182.11623 * 1 2 3
25 25 H 1.09000 * 109.46958 * 302.11397 * 1 2 3
26 26 H 1.08997 * 109.47068 * 240.00718 * 2 1 3
27 27 H 1.08999 * 109.47781 * 119.99999 * 2 1 3
28 28 H 0.96998 * 120.00034 * 357.91158 * 8 7 5
29 29 H 1.00896 * 110.99655 * 328.77985 * 13 3 2
30 30 H 1.09003 * 110.32534 * 237.79402 * 16 14 13
31 31 H 1.09001 * 110.32162 * 359.89601 * 16 14 13
32 32 H 1.08995 * 110.41390 * 142.63224 * 17 16 14
33 33 H 1.08999 * 110.41036 * 265.08046 * 17 16 14
34 34 H 1.09004 * 109.47116 * 60.12672 * 19 18 17
35 35 H 1.08999 * 109.47178 * 180.13039 * 19 18 17
36 36 H 1.08999 * 109.47157 * 300.13073 * 19 18 17
37 37 H 1.08998 * 109.46764 * 304.82932 * 22 20 18
38 38 H 1.09002 * 109.47031 * 64.82400 * 22 20 18
39 39 H 1.09001 * 109.47257 * 184.82467 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5967 1.9846 -0.8354
5 6 3.5405 1.4450 -0.1392
6 1 4.1571 1.8129 0.6675
7 6 4.1262 0.9773 -1.2965
8 7 3.3791 0.6731 -2.3351
9 14 5.9810 0.7759 -1.3891
10 1 6.3566 0.2608 -2.7304
11 1 6.6336 2.0904 -1.1626
12 1 6.4272 -0.1843 -0.3480
13 7 1.6642 2.0948 1.2616
14 6 1.5875 3.5526 1.0981
15 1 2.3793 3.9007 0.4347
16 6 0.2066 3.9576 0.5427
17 6 -0.4104 4.8678 1.6264
18 7 0.7564 5.4045 2.3731
19 6 0.3574 5.8731 3.7070
20 6 1.6888 4.2521 2.4705
21 1 1.3756 3.5758 3.2660
22 6 3.1177 4.7411 2.7161
23 1 -0.3634 0.4805 -0.9084
24 1 -0.3633 -1.0270 0.0379
25 1 -0.3633 0.5463 0.8704
26 1 1.8933 -0.5137 -0.8900
27 1 1.8934 -0.5138 0.8899
28 1 2.4138 0.7489 -2.2771
29 1 0.7948 1.7243 1.6151
30 1 0.3205 4.5060 -0.3924
31 1 -0.4138 3.0745 0.3897
32 1 -0.9731 5.6797 1.1657
33 1 -1.0521 4.2878 2.2897
34 1 -0.0652 5.0426 4.2725
35 1 1.2300 6.2630 4.2311
36 1 -0.3886 6.6615 3.6070
37 1 3.3987 5.4484 1.9358
38 1 3.1718 5.2319 3.6879
39 1 3.8004 3.8916 2.6995
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000719583240.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:33
Heat of formation + Delta-G solvation = -6.428119 kcal
Electronic energy + Delta-G solvation = -16782.763142 eV
Core-core repulsion = 14338.633853 eV
Total energy + Delta-G solvation = -2444.129289 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.14368 -36.16707 -32.87952 -31.49104 -31.02561 -29.38698 -26.13040 -24.82419
-24.14442 -22.84898 -20.70520 -19.90637 -19.47335 -16.62414 -15.65872 -15.37754
-14.71012 -14.36264 -13.88772 -13.68466 -13.34042 -13.08304 -12.57240 -12.44980
-12.25720 -12.02145 -11.51661 -11.37642 -11.22126 -11.12798 -10.88513 -10.70136
-10.61575 -10.45889 -10.23404 -10.04006 -9.90540 -9.72617 -8.62727 -8.34390
-8.30359 -7.26876 -6.26255 -3.96841 3.48171 3.50058 3.68442 4.16358
4.57773 4.92008 4.95825 5.28673 5.31553 5.41658 5.47636 5.52638
5.67776 5.75012 5.81130 5.88707 5.89486 5.95230 5.97955 6.13819
6.18681 6.22527 6.29651 6.43475 6.60330 6.61077 6.74772 6.81402
6.92002 6.98655 7.21265 7.25677 7.41420 8.07220 8.16822 8.50353
8.72715 8.98343 9.72923 11.08749
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.027839 B = 0.008439 C = 0.007062
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1005.541633 B = 3316.999298 C = 3963.843533
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.128 4.128
3 C 0.209 3.791
4 H -0.005 1.005
5 C -0.575 4.575
6 H 0.055 0.945
7 C 0.016 3.984
8 N -0.917 5.917
9 Si 1.067 2.933
10 H -0.285 1.285
11 H -0.289 1.289
12 H -0.289 1.289
13 N -0.672 5.672
14 C 0.100 3.900
15 H 0.094 0.906
16 C -0.156 4.156
17 C 0.036 3.964
18 N -0.516 5.516
19 C 0.017 3.983
20 C 0.069 3.931
21 H 0.052 0.948
22 C -0.127 4.127
23 H 0.043 0.957
24 H 0.041 0.959
25 H 0.040 0.960
26 H 0.071 0.929
27 H 0.052 0.948
28 H 0.269 0.731
29 H 0.314 0.686
30 H 0.068 0.932
31 H 0.064 0.936
32 H 0.074 0.926
33 H 0.038 0.962
34 H 0.024 0.976
35 H 0.067 0.933
36 H 0.063 0.937
37 H 0.058 0.942
38 H 0.042 0.958
39 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.452 6.193 8.519 12.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.167 4.167
3 C 0.102 3.898
4 H 0.013 0.987
5 C -0.614 4.614
6 H 0.074 0.926
7 C -0.188 4.188
8 N -0.554 5.554
9 Si 0.895 3.105
10 H -0.210 1.210
11 H -0.216 1.216
12 H -0.215 1.215
13 N -0.302 5.302
14 C -0.012 4.012
15 H 0.112 0.888
16 C -0.196 4.196
17 C -0.092 4.092
18 N -0.240 5.240
19 C -0.132 4.132
20 C -0.039 4.039
21 H 0.070 0.930
22 C -0.185 4.185
23 H 0.063 0.937
24 H 0.060 0.940
25 H 0.059 0.941
26 H 0.090 0.910
27 H 0.071 0.929
28 H 0.080 0.920
29 H 0.132 0.868
30 H 0.087 0.913
31 H 0.083 0.917
32 H 0.092 0.908
33 H 0.056 0.944
34 H 0.042 0.958
35 H 0.086 0.914
36 H 0.082 0.918
37 H 0.077 0.923
38 H 0.061 0.939
39 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -4.303 6.204 7.482 10.629
hybrid contribution -2.631 -0.140 1.007 2.821
sum -6.934 6.064 8.489 12.526
Atomic orbital electron populations
1.21902 0.98973 1.00008 1.00113 1.21849 0.91951 1.00747 1.02173
1.19249 0.96362 0.89130 0.85097 0.98739 1.21952 0.90774 1.44980
1.03698 0.92639 1.25747 1.06761 0.94182 0.92088 1.70815 1.07231
1.47032 1.30311 0.83572 0.74594 0.76482 0.75811 1.21028 1.21573
1.21529 1.60640 1.35507 1.01767 1.32307 1.22225 0.95380 0.89221
0.94394 0.88822 1.23124 0.98652 0.99130 0.98698 1.23024 0.92890
0.97412 0.95849 1.65335 1.11407 1.31931 1.15332 1.22468 1.00787
0.99519 0.90476 1.22664 0.93523 0.89971 0.97756 0.92959 1.21607
0.95089 1.01408 1.00402 0.93746 0.93990 0.94077 0.90998 0.92932
0.92023 0.86752 0.91329 0.91739 0.90769 0.94415 0.95758 0.91402
0.91840 0.92256 0.93910 0.91298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.80 9.78 37.16 0.36 -2.44 16
2 C -0.13 -2.91 5.20 -26.73 -0.14 -3.05 16
3 C 0.21 5.08 1.51 -68.86 -0.10 4.98 16
4 H 0.00 -0.13 7.07 -51.93 -0.37 -0.50 16
5 C -0.58 -15.91 8.44 -34.44 -0.29 -16.20 16
6 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16
7 C 0.02 0.44 5.18 -17.82 -0.09 0.35 16
8 N -0.92 -27.16 12.99 55.43 0.72 -26.44 16
9 Si 1.07 25.33 29.91 -169.99 -5.08 20.25 16
10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
13 N -0.67 -14.01 6.01 -99.50 -0.60 -14.61 16
14 C 0.10 1.90 2.71 -66.34 -0.18 1.72 16
15 H 0.09 2.09 7.44 -51.93 -0.39 1.70 16
16 C -0.16 -2.61 6.36 -25.35 -0.16 -2.77 16
17 C 0.04 0.52 6.49 -2.18 -0.01 0.51 16
18 N -0.52 -7.70 5.34 -230.34 -1.23 -8.93 16
19 C 0.02 0.20 9.42 60.07 0.57 0.77 16
20 C 0.07 1.15 2.60 -66.07 -0.17 0.98 16
21 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16
22 C -0.13 -2.04 9.32 37.16 0.35 -1.70 16
23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
25 H 0.04 0.69 6.39 -51.93 -0.33 0.35 16
26 H 0.07 1.81 6.24 -51.93 -0.32 1.49 16
27 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16
28 H 0.27 7.89 5.99 -40.82 -0.24 7.65 16
29 H 0.31 6.02 6.05 -39.29 -0.24 5.78 16
30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
31 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16
32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
33 H 0.04 0.51 7.97 -51.93 -0.41 0.09 16
34 H 0.02 0.28 7.97 -51.93 -0.41 -0.13 16
35 H 0.07 0.78 7.62 -51.93 -0.40 0.38 16
36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16
39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
LS Contribution 301.43 15.07 4.54 4.54
Total: -1.00 -28.79 301.43 -8.43 -37.23
By element:
Atomic # 1 Polarization: 11.72 SS G_CDS: -6.91 Total: 4.82 kcal
Atomic # 6 Polarization: -16.98 SS G_CDS: 0.12 Total: -16.85 kcal
Atomic # 7 Polarization: -48.87 SS G_CDS: -1.11 Total: -49.98 kcal
Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -28.79 -8.43 -37.23 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000719583240.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.798 kcal
(2) G-P(sol) polarization free energy of solvation -28.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds