Wall clock time and date at job start Mon Mar 30 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46750 * 2 1 4 4 H 1.09001 * 109.46999 * 305.62230 * 3 2 1 5 5 C 1.50702 * 109.47016 * 185.62174 * 3 2 1 6 6 H 1.07998 * 120.00478 * 245.01917 * 5 3 2 7 7 C 1.37880 * 119.99848 * 65.01798 * 5 3 2 8 8 N 1.31513 * 120.00139 * 7.77958 * 7 5 3 9 9 Si 1.86802 * 119.99976 * 187.77939 * 7 5 3 10 10 H 1.48504 * 109.46915 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47113 * 299.99851 * 9 7 5 12 12 H 1.48494 * 109.47036 * 60.00170 * 9 7 5 13 13 N 1.46902 * 109.47096 * 65.62548 * 3 2 1 14 14 C 1.46898 * 110.99982 * 204.82924 * 13 3 2 15 15 H 1.09003 * 110.28432 * 322.09258 * 14 13 3 16 16 C 1.54256 * 110.32585 * 84.22231 * 14 13 3 17 17 C 1.54381 * 105.06168 * 118.89708 * 16 14 13 18 18 N 1.48564 * 104.59218 * 23.85138 * 17 16 14 19 19 C 1.46901 * 110.99935 * 200.96082 * 18 17 16 20 20 C 1.48555 * 104.22216 * 320.51963 * 18 17 16 21 21 H 1.09005 * 110.41306 * 280.70097 * 20 18 17 22 22 C 1.53005 * 110.41205 * 158.26272 * 20 18 17 23 23 H 1.09001 * 109.47375 * 62.12120 * 1 2 3 24 24 H 1.09000 * 109.46718 * 182.11623 * 1 2 3 25 25 H 1.09000 * 109.46958 * 302.11397 * 1 2 3 26 26 H 1.08997 * 109.47068 * 240.00718 * 2 1 3 27 27 H 1.08999 * 109.47781 * 119.99999 * 2 1 3 28 28 H 0.96998 * 120.00034 * 357.91158 * 8 7 5 29 29 H 1.00896 * 110.99655 * 328.77985 * 13 3 2 30 30 H 1.09003 * 110.32534 * 237.79402 * 16 14 13 31 31 H 1.09001 * 110.32162 * 359.89601 * 16 14 13 32 32 H 1.08995 * 110.41390 * 142.63224 * 17 16 14 33 33 H 1.08999 * 110.41036 * 265.08046 * 17 16 14 34 34 H 1.09004 * 109.47116 * 60.12672 * 19 18 17 35 35 H 1.08999 * 109.47178 * 180.13039 * 19 18 17 36 36 H 1.08999 * 109.47157 * 300.13073 * 19 18 17 37 37 H 1.08998 * 109.46764 * 304.82932 * 22 20 18 38 38 H 1.09002 * 109.47031 * 64.82400 * 22 20 18 39 39 H 1.09001 * 109.47257 * 184.82467 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5967 1.9846 -0.8354 5 6 3.5405 1.4450 -0.1392 6 1 4.1571 1.8129 0.6675 7 6 4.1262 0.9773 -1.2965 8 7 3.3791 0.6731 -2.3351 9 14 5.9810 0.7759 -1.3891 10 1 6.3566 0.2608 -2.7304 11 1 6.6336 2.0904 -1.1626 12 1 6.4272 -0.1843 -0.3480 13 7 1.6642 2.0948 1.2616 14 6 1.5875 3.5526 1.0981 15 1 2.3793 3.9007 0.4347 16 6 0.2066 3.9576 0.5427 17 6 -0.4104 4.8678 1.6264 18 7 0.7564 5.4045 2.3731 19 6 0.3574 5.8731 3.7070 20 6 1.6888 4.2521 2.4705 21 1 1.3756 3.5758 3.2660 22 6 3.1177 4.7411 2.7161 23 1 -0.3634 0.4805 -0.9084 24 1 -0.3633 -1.0270 0.0379 25 1 -0.3633 0.5463 0.8704 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.4138 0.7489 -2.2771 29 1 0.7948 1.7243 1.6151 30 1 0.3205 4.5060 -0.3924 31 1 -0.4138 3.0745 0.3897 32 1 -0.9731 5.6797 1.1657 33 1 -1.0521 4.2878 2.2897 34 1 -0.0652 5.0426 4.2725 35 1 1.2300 6.2630 4.2311 36 1 -0.3886 6.6615 3.6070 37 1 3.3987 5.4484 1.9358 38 1 3.1718 5.2319 3.6879 39 1 3.8004 3.8916 2.6995 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719583240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:33 Heat of formation + Delta-G solvation = -26.217866 kcal Electronic energy + Delta-G solvation = -16783.621289 eV Core-core repulsion = 14338.633853 eV Total energy + Delta-G solvation = -2444.987437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51190 -37.90651 -34.64337 -33.25918 -32.31567 -30.84073 -27.98225 -25.96526 -25.73405 -24.65801 -22.11737 -21.58264 -20.97765 -18.71255 -17.13735 -16.85317 -16.06950 -15.75085 -15.64532 -15.29985 -14.81810 -14.39039 -14.19519 -14.04460 -13.62915 -13.41875 -13.27360 -12.82612 -12.72932 -12.51011 -12.41715 -12.27715 -12.12211 -12.02305 -11.93211 -11.75932 -11.69734 -11.33408 -10.62780 -10.44239 -9.48046 -9.07651 -8.49564 -6.22725 1.53394 1.60703 1.80004 2.59003 2.96644 3.23148 3.49190 3.65404 3.90743 4.06776 4.26361 4.30112 4.34734 4.36654 4.46757 4.52912 4.55430 4.57657 4.70414 4.83563 4.87299 4.90022 4.99588 5.02054 5.07179 5.07610 5.13092 5.15328 5.33446 5.40866 5.53218 5.80694 6.06546 6.12015 6.20539 6.54961 6.63068 6.96608 7.54323 8.83645 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.008439 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.541633 B = 3316.999298 C = 3963.843533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.217 3.783 4 H -0.035 1.035 5 C -0.586 4.586 6 H 0.041 0.959 7 C -0.031 4.031 8 N -0.939 5.939 9 Si 1.109 2.891 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.096 3.904 15 H 0.051 0.949 16 C -0.153 4.153 17 C 0.044 3.956 18 N -0.526 5.526 19 C 0.015 3.985 20 C 0.078 3.922 21 H 0.055 0.945 22 C -0.123 4.123 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 6.820 10.242 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.108 3.892 4 H -0.017 1.017 5 C -0.625 4.625 6 H 0.059 0.941 7 C -0.229 4.229 8 N -0.577 5.577 9 Si 0.932 3.068 10 H -0.211 1.211 11 H -0.202 1.202 12 H -0.199 1.199 13 N -0.303 5.303 14 C -0.015 4.015 15 H 0.069 0.931 16 C -0.193 4.193 17 C -0.084 4.084 18 N -0.251 5.251 19 C -0.133 4.133 20 C -0.031 4.031 21 H 0.072 0.928 22 C -0.181 4.181 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.302 6.848 9.234 12.659 hybrid contribution -2.352 -0.285 0.496 2.420 sum -7.653 6.563 9.730 14.012 Atomic orbital electron populations 1.21775 0.95324 1.01878 1.00856 1.21670 0.95209 0.98844 1.00386 1.19008 0.94498 0.90150 0.85555 1.01746 1.22259 0.92748 1.44339 1.03164 0.94052 1.27023 1.10356 0.93665 0.91870 1.70918 1.06848 1.48839 1.31125 0.83025 0.70345 0.77344 0.76104 1.21077 1.20198 1.19877 1.60529 1.36444 1.02875 1.30416 1.22163 0.95514 0.88185 0.95679 0.93087 1.23029 0.97305 0.99723 0.99217 1.23018 0.92697 0.97569 0.95077 1.65328 1.11560 1.30834 1.17334 1.22559 1.01701 1.00195 0.88831 1.22495 0.94336 0.90504 0.95722 0.92751 1.21543 0.94484 1.00495 1.01544 0.94117 0.91665 0.92054 0.94114 0.93258 0.93116 0.85353 0.92434 0.91635 0.88989 0.92833 0.95076 0.90730 0.89961 0.93196 0.91270 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.78 71.98 0.70 -4.28 16 2 C -0.12 -5.59 5.20 30.60 0.16 -5.43 16 3 C 0.22 10.78 1.51 44.17 0.07 10.85 16 4 H -0.03 -1.93 7.07 -2.39 -0.02 -1.95 16 5 C -0.59 -33.38 8.44 25.60 0.22 -33.16 16 6 H 0.04 2.42 7.83 -2.91 -0.02 2.39 16 7 C -0.03 -1.80 5.18 84.66 0.44 -1.36 16 8 N -0.94 -57.22 12.99 21.45 0.28 -56.94 16 9 Si 1.11 51.59 29.91 68.60 2.05 53.64 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.67 -28.10 6.01 -468.72 -2.81 -30.92 16 14 C 0.10 3.70 2.71 45.81 0.12 3.83 16 15 H 0.05 2.39 7.44 -2.39 -0.02 2.37 16 16 C -0.15 -5.00 6.36 31.49 0.20 -4.80 16 17 C 0.04 1.15 6.49 86.45 0.56 1.71 16 18 N -0.53 -14.43 5.34 -882.68 -4.71 -19.15 16 19 C 0.02 0.32 9.42 127.69 1.20 1.52 16 20 C 0.08 2.49 2.60 45.06 0.12 2.61 16 21 H 0.05 1.73 7.82 -2.38 -0.02 1.71 16 22 C -0.12 -3.87 9.32 71.98 0.67 -3.20 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 1.91 6.39 -2.39 -0.02 1.89 16 26 H 0.04 2.10 6.24 -2.39 -0.01 2.09 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.26 15.82 5.99 -92.71 -0.56 15.27 16 29 H 0.33 12.14 6.05 -89.70 -0.54 11.60 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.24 7.97 -2.39 -0.02 1.22 16 34 H 0.03 0.61 7.97 -2.38 -0.02 0.59 16 35 H 0.07 1.45 7.62 -2.39 -0.02 1.43 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.78 7.65 -2.39 -0.02 1.76 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.44 301.43 -0.07 -63.51 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.67 Total: 21.58 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 4.46 Total: -31.72 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -7.25 Total: -107.01 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.64 kcal Total: -63.44 -0.07 -63.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719583240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.294 kcal (2) G-P(sol) polarization free energy of solvation -63.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds