Wall clock time and date at job start Mon Mar 30 2020 03:09:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1
5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1
6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2
7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2
8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3
10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5
11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5
12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5
13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1
14 14 C 1.48558 * 111.00584 * 290.42103 * 13 3 2
15 15 C 1.54374 * 104.59741 * 200.96049 * 14 13 3
16 16 H 1.09008 * 110.32504 * 264.95837 * 15 14 13
17 17 N 1.46903 * 110.32496 * 142.74571 * 15 14 13
18 18 C 1.54261 * 105.06149 * 23.84964 * 15 14 13
19 19 C 1.52998 * 110.32535 * 241.10558 * 18 15 14
20 20 C 1.53003 * 110.32419 * 118.89563 * 18 15 14
21 21 C 1.48564 * 110.99911 * 174.99851 * 13 3 2
22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3
26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3
27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5
28 28 H 1.09003 * 110.40910 * 319.73826 * 14 13 3
29 29 H 1.09001 * 110.41395 * 82.18170 * 14 13 3
30 30 H 1.00899 * 110.99440 * 64.36748 * 17 15 14
31 31 H 1.00900 * 111.00121 * 188.31715 * 17 15 14
32 32 H 1.09001 * 109.47016 * 177.09286 * 19 18 15
33 33 H 1.09001 * 109.47183 * 297.08573 * 19 18 15
34 34 H 1.08999 * 109.47535 * 57.09167 * 19 18 15
35 35 H 1.08999 * 109.47308 * 302.91151 * 20 18 15
36 36 H 1.09001 * 109.47215 * 62.91293 * 20 18 15
37 37 H 1.09005 * 109.47027 * 182.91031 * 20 18 15
38 38 H 1.09005 * 110.41241 * 277.82250 * 21 13 3
39 39 H 1.08996 * 110.41124 * 40.26891 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6054 1.9816 0.8418
5 6 3.5419 1.4443 0.1238
6 1 4.1473 1.8889 -0.6523
7 6 4.1432 0.8784 1.2281
8 7 3.4062 0.3367 2.1730
9 14 6.0049 0.8813 1.3819
10 1 6.4417 2.1143 2.0850
11 1 6.4395 -0.3097 2.1551
12 1 6.6135 0.8416 0.0279
13 7 1.6515 2.0992 -1.2553
14 6 2.4049 1.5372 -2.4057
15 6 2.3185 2.6260 -3.4966
16 1 1.4897 2.4187 -4.1736
17 7 3.5816 2.7020 -4.2428
18 6 2.0685 3.9416 -2.7310
19 6 0.7331 4.5570 -3.1537
20 6 3.2119 4.9272 -2.9806
21 6 2.0250 3.5370 -1.2417
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3634 0.5139 0.8900
25 1 1.8934 -0.5137 0.8900
26 1 1.8934 -0.5138 -0.8899
27 1 3.8293 -0.0610 2.9499
28 1 3.4438 1.3582 -2.1286
29 1 1.9384 0.6147 -2.7515
30 1 3.7552 1.8459 -4.7479
31 1 3.5868 3.4963 -4.8650
32 1 0.5463 5.4572 -2.5681
33 1 0.7702 4.8137 -4.2124
34 1 -0.0686 3.8388 -2.9818
35 1 4.1566 4.4698 -2.6868
36 1 3.2461 5.1834 -4.0395
37 1 3.0475 5.8307 -2.3933
38 1 1.2724 4.1204 -0.7112
39 1 3.0044 3.6710 -0.7827
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000720757344.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:11
Heat of formation + Delta-G solvation = -20.909220 kcal
Electronic energy + Delta-G solvation = -17164.680391 eV
Core-core repulsion = 14719.923155 eV
Total energy + Delta-G solvation = -2444.757236 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.65959 -37.14335 -34.17281 -33.49312 -32.69610 -29.13615 -28.09802 -27.57189
-26.04726 -24.19653 -22.54912 -20.94356 -19.42345 -18.38692 -17.07063 -16.55362
-16.32754 -16.02463 -15.16222 -15.02918 -14.59580 -14.45545 -13.88528 -13.81159
-13.58680 -13.21305 -12.95704 -12.82735 -12.66700 -12.45857 -12.39770 -12.11419
-11.91714 -11.71722 -11.68575 -11.45969 -11.29908 -11.13232 -10.91242 -10.42459
-9.45062 -8.99481 -8.03047 -6.22815 1.36128 1.38159 1.47774 2.40835
3.16098 3.42499 3.74714 3.84836 3.99917 4.19787 4.53709 4.56715
4.58086 4.65069 4.73668 4.87595 4.88368 4.92872 5.00617 5.05823
5.13794 5.22567 5.27481 5.27705 5.34036 5.41676 5.47742 5.48107
5.62186 5.68364 5.77589 6.05668 6.18796 6.33529 6.42648 6.55016
6.74784 6.98346 7.46420 8.93362
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.024167 B = 0.010574 C = 0.008580
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1158.349326 B = 2647.413861 C = 3262.551499
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.102 4.102
3 C 0.209 3.791
4 H 0.000 1.000
5 C -0.544 4.544
6 H 0.054 0.946
7 C 0.020 3.980
8 N -0.912 5.912
9 Si 0.945 3.055
10 H -0.279 1.279
11 H -0.283 1.283
12 H -0.273 1.273
13 N -0.504 5.504
14 C 0.042 3.958
15 C 0.102 3.898
16 H 0.049 0.951
17 N -0.845 5.845
18 C -0.062 4.062
19 C -0.125 4.125
20 C -0.119 4.119
21 C 0.047 3.953
22 H 0.046 0.954
23 H 0.056 0.944
24 H 0.032 0.968
25 H 0.061 0.939
26 H 0.027 0.973
27 H 0.260 0.740
28 H 0.045 0.955
29 H 0.056 0.944
30 H 0.344 0.656
31 H 0.350 0.650
32 H 0.059 0.941
33 H 0.068 0.932
34 H 0.050 0.950
35 H 0.045 0.955
36 H 0.072 0.928
37 H 0.050 0.950
38 H 0.060 0.940
39 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.902 5.865 -11.901 13.581
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.141 4.141
3 C 0.101 3.899
4 H 0.018 0.982
5 C -0.583 4.583
6 H 0.072 0.928
7 C -0.180 4.180
8 N -0.552 5.552
9 Si 0.771 3.229
10 H -0.205 1.205
11 H -0.208 1.208
12 H -0.198 1.198
13 N -0.228 5.228
14 C -0.087 4.087
15 C -0.010 4.010
16 H 0.067 0.933
17 N -0.378 5.378
18 C -0.063 4.063
19 C -0.182 4.182
20 C -0.177 4.177
21 C -0.082 4.082
22 H 0.065 0.935
23 H 0.075 0.925
24 H 0.051 0.949
25 H 0.080 0.920
26 H 0.045 0.955
27 H 0.070 0.930
28 H 0.063 0.937
29 H 0.075 0.925
30 H 0.157 0.843
31 H 0.166 0.834
32 H 0.078 0.922
33 H 0.087 0.913
34 H 0.069 0.931
35 H 0.064 0.936
36 H 0.091 0.909
37 H 0.069 0.931
38 H 0.079 0.921
39 H 0.043 0.957
Dipole moment (debyes) X Y Z Total
from point charges -3.142 5.771 -11.060 12.865
hybrid contribution 1.381 -0.369 0.087 1.432
sum -1.761 5.402 -10.973 12.357
Atomic orbital electron populations
1.21567 0.96288 0.99809 1.00614 1.21367 0.94481 0.98126 1.00089
1.19137 0.92052 0.91664 0.87004 0.98226 1.21959 0.93934 1.37269
1.05122 0.92776 1.25602 1.01655 0.95087 0.95620 1.70006 1.36158
1.39203 1.09807 0.85764 0.81697 0.77461 0.77978 1.20484 1.20833
1.19757 1.65620 1.50978 1.02260 1.03897 1.22997 0.97693 0.96693
0.91323 1.22019 0.90407 0.94467 0.94089 0.93290 1.58790 1.35248
1.09002 1.34770 1.21349 0.96871 0.94712 0.93380 1.21761 0.95013
1.00201 1.01275 1.21596 0.97126 0.97286 1.01687 1.23040 0.98269
0.90602 0.96246 0.93503 0.92504 0.94877 0.92010 0.95468 0.93033
0.93717 0.92536 0.84318 0.83434 0.92218 0.91338 0.93073 0.93614
0.90930 0.93064 0.92114 0.95697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.17 9.80 71.98 0.71 -4.47 16
2 C -0.10 -5.02 5.24 30.60 0.16 -4.86 16
3 C 0.21 10.75 1.76 44.17 0.08 10.83 16
4 H 0.00 -0.01 8.13 -2.39 -0.02 -0.03 16
5 C -0.54 -30.07 6.56 25.60 0.17 -29.90 16
6 H 0.05 3.05 5.65 -2.91 -0.02 3.04 16
7 C 0.02 1.11 5.29 84.66 0.45 1.56 16
8 N -0.91 -53.09 11.29 21.45 0.24 -52.84 16
9 Si 0.94 44.76 29.54 68.60 2.03 46.79 16
10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16
13 N -0.50 -21.74 4.82 -860.72 -4.15 -25.89 16
14 C 0.04 1.66 5.19 86.45 0.45 2.11 16
15 C 0.10 3.10 3.83 45.81 0.18 3.27 16
16 H 0.05 1.37 7.71 -2.38 -0.02 1.35 16
17 N -0.84 -22.00 8.03 -164.96 -1.32 -23.32 16
18 C -0.06 -1.87 1.03 -51.28 -0.05 -1.92 16
19 C -0.13 -3.07 8.23 71.98 0.59 -2.48 16
20 C -0.12 -3.19 7.34 71.98 0.53 -2.67 16
21 C 0.05 1.87 5.40 86.45 0.47 2.34 16
22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
23 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16
24 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16
25 H 0.06 3.42 5.95 -2.39 -0.01 3.40 16
26 H 0.03 1.31 7.04 -2.39 -0.02 1.29 16
27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16
28 H 0.04 2.08 5.44 -2.39 -0.01 2.07 16
29 H 0.06 2.21 7.63 -2.39 -0.02 2.19 16
30 H 0.34 8.01 9.08 -89.69 -0.81 7.20 16
31 H 0.35 7.22 7.32 -89.69 -0.66 6.56 16
32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16
34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.04 1.45 7.71 -2.39 -0.02 1.43 16
36 H 0.07 1.52 7.02 -2.39 -0.02 1.50 16
37 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16
38 H 0.06 2.35 7.86 -2.38 -0.02 2.33 16
39 H 0.02 1.14 6.35 -2.39 -0.02 1.12 16
Total: -1.00 -60.58 292.49 0.08 -60.51
By element:
Atomic # 1 Polarization: 21.38 SS G_CDS: -0.44 Total: 20.94 kcal
Atomic # 6 Polarization: -29.90 SS G_CDS: 3.72 Total: -26.18 kcal
Atomic # 7 Polarization: -96.83 SS G_CDS: -5.23 Total: -102.06 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -60.58 0.08 -60.51 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000720757344.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.598 kcal
(2) G-P(sol) polarization free energy of solvation -60.584 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds