Wall clock time and date at job start Mon Mar 30 2020 03:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.48558 * 111.00584 * 290.42103 * 13 3 2 15 15 C 1.54374 * 104.59741 * 200.96049 * 14 13 3 16 16 H 1.09008 * 110.32504 * 264.95837 * 15 14 13 17 17 N 1.46903 * 110.32496 * 142.74571 * 15 14 13 18 18 C 1.54261 * 105.06149 * 23.84964 * 15 14 13 19 19 C 1.52998 * 110.32535 * 241.10558 * 18 15 14 20 20 C 1.53003 * 110.32419 * 118.89563 * 18 15 14 21 21 C 1.48564 * 110.99911 * 174.99851 * 13 3 2 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 28 28 H 1.09003 * 110.40910 * 319.73826 * 14 13 3 29 29 H 1.09001 * 110.41395 * 82.18170 * 14 13 3 30 30 H 1.00899 * 110.99440 * 64.36748 * 17 15 14 31 31 H 1.00900 * 111.00121 * 188.31715 * 17 15 14 32 32 H 1.09001 * 109.47016 * 177.09286 * 19 18 15 33 33 H 1.09001 * 109.47183 * 297.08573 * 19 18 15 34 34 H 1.08999 * 109.47535 * 57.09167 * 19 18 15 35 35 H 1.08999 * 109.47308 * 302.91151 * 20 18 15 36 36 H 1.09001 * 109.47215 * 62.91293 * 20 18 15 37 37 H 1.09005 * 109.47027 * 182.91031 * 20 18 15 38 38 H 1.09005 * 110.41241 * 277.82250 * 21 13 3 39 39 H 1.08996 * 110.41124 * 40.26891 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6515 2.0992 -1.2553 14 6 2.4049 1.5372 -2.4057 15 6 2.3185 2.6260 -3.4966 16 1 1.4897 2.4187 -4.1736 17 7 3.5816 2.7020 -4.2428 18 6 2.0685 3.9416 -2.7310 19 6 0.7331 4.5570 -3.1537 20 6 3.2119 4.9272 -2.9806 21 6 2.0250 3.5370 -1.2417 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0610 2.9499 28 1 3.4438 1.3582 -2.1286 29 1 1.9384 0.6147 -2.7515 30 1 3.7552 1.8459 -4.7479 31 1 3.5868 3.4963 -4.8650 32 1 0.5463 5.4572 -2.5681 33 1 0.7702 4.8137 -4.2124 34 1 -0.0686 3.8388 -2.9818 35 1 4.1566 4.4698 -2.6868 36 1 3.2461 5.1834 -4.0395 37 1 3.0475 5.8307 -2.3933 38 1 1.2724 4.1204 -0.7112 39 1 3.0044 3.6710 -0.7827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720757344.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:11 Heat of formation + Delta-G solvation = -20.909220 kcal Electronic energy + Delta-G solvation = -17164.680391 eV Core-core repulsion = 14719.923155 eV Total energy + Delta-G solvation = -2444.757236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.65959 -37.14335 -34.17281 -33.49312 -32.69610 -29.13615 -28.09802 -27.57189 -26.04726 -24.19653 -22.54912 -20.94356 -19.42345 -18.38692 -17.07063 -16.55362 -16.32754 -16.02463 -15.16222 -15.02918 -14.59580 -14.45545 -13.88528 -13.81159 -13.58680 -13.21305 -12.95704 -12.82735 -12.66700 -12.45857 -12.39770 -12.11419 -11.91714 -11.71722 -11.68575 -11.45969 -11.29908 -11.13232 -10.91242 -10.42459 -9.45062 -8.99481 -8.03047 -6.22815 1.36128 1.38159 1.47774 2.40835 3.16098 3.42499 3.74714 3.84836 3.99917 4.19787 4.53709 4.56715 4.58086 4.65069 4.73668 4.87595 4.88368 4.92872 5.00617 5.05823 5.13794 5.22567 5.27481 5.27705 5.34036 5.41676 5.47742 5.48107 5.62186 5.68364 5.77589 6.05668 6.18796 6.33529 6.42648 6.55016 6.74784 6.98346 7.46420 8.93362 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.010574 C = 0.008580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.349326 B = 2647.413861 C = 3262.551499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.209 3.791 4 H 0.000 1.000 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.504 5.504 14 C 0.042 3.958 15 C 0.102 3.898 16 H 0.049 0.951 17 N -0.845 5.845 18 C -0.062 4.062 19 C -0.125 4.125 20 C -0.119 4.119 21 C 0.047 3.953 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.344 0.656 31 H 0.350 0.650 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 5.865 -11.901 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.101 3.899 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.228 5.228 14 C -0.087 4.087 15 C -0.010 4.010 16 H 0.067 0.933 17 N -0.378 5.378 18 C -0.063 4.063 19 C -0.182 4.182 20 C -0.177 4.177 21 C -0.082 4.082 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.142 5.771 -11.060 12.865 hybrid contribution 1.381 -0.369 0.087 1.432 sum -1.761 5.402 -10.973 12.357 Atomic orbital electron populations 1.21567 0.96288 0.99809 1.00614 1.21367 0.94481 0.98126 1.00089 1.19137 0.92052 0.91664 0.87004 0.98226 1.21959 0.93934 1.37269 1.05122 0.92776 1.25602 1.01655 0.95087 0.95620 1.70006 1.36158 1.39203 1.09807 0.85764 0.81697 0.77461 0.77978 1.20484 1.20833 1.19757 1.65620 1.50978 1.02260 1.03897 1.22997 0.97693 0.96693 0.91323 1.22019 0.90407 0.94467 0.94089 0.93290 1.58790 1.35248 1.09002 1.34770 1.21349 0.96871 0.94712 0.93380 1.21761 0.95013 1.00201 1.01275 1.21596 0.97126 0.97286 1.01687 1.23040 0.98269 0.90602 0.96246 0.93503 0.92504 0.94877 0.92010 0.95468 0.93033 0.93717 0.92536 0.84318 0.83434 0.92218 0.91338 0.93073 0.93614 0.90930 0.93064 0.92114 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.80 71.98 0.71 -4.47 16 2 C -0.10 -5.02 5.24 30.60 0.16 -4.86 16 3 C 0.21 10.75 1.76 44.17 0.08 10.83 16 4 H 0.00 -0.01 8.13 -2.39 -0.02 -0.03 16 5 C -0.54 -30.07 6.56 25.60 0.17 -29.90 16 6 H 0.05 3.05 5.65 -2.91 -0.02 3.04 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -53.09 11.29 21.45 0.24 -52.84 16 9 Si 0.94 44.76 29.54 68.60 2.03 46.79 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 13 N -0.50 -21.74 4.82 -860.72 -4.15 -25.89 16 14 C 0.04 1.66 5.19 86.45 0.45 2.11 16 15 C 0.10 3.10 3.83 45.81 0.18 3.27 16 16 H 0.05 1.37 7.71 -2.38 -0.02 1.35 16 17 N -0.84 -22.00 8.03 -164.96 -1.32 -23.32 16 18 C -0.06 -1.87 1.03 -51.28 -0.05 -1.92 16 19 C -0.13 -3.07 8.23 71.98 0.59 -2.48 16 20 C -0.12 -3.19 7.34 71.98 0.53 -2.67 16 21 C 0.05 1.87 5.40 86.45 0.47 2.34 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 24 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.06 3.42 5.95 -2.39 -0.01 3.40 16 26 H 0.03 1.31 7.04 -2.39 -0.02 1.29 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.04 2.08 5.44 -2.39 -0.01 2.07 16 29 H 0.06 2.21 7.63 -2.39 -0.02 2.19 16 30 H 0.34 8.01 9.08 -89.69 -0.81 7.20 16 31 H 0.35 7.22 7.32 -89.69 -0.66 6.56 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.45 7.71 -2.39 -0.02 1.43 16 36 H 0.07 1.52 7.02 -2.39 -0.02 1.50 16 37 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.06 2.35 7.86 -2.38 -0.02 2.33 16 39 H 0.02 1.14 6.35 -2.39 -0.02 1.12 16 Total: -1.00 -60.58 292.49 0.08 -60.51 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.44 Total: 20.94 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.72 Total: -26.18 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -5.23 Total: -102.06 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -60.58 0.08 -60.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720757344.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.598 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds