Wall clock time and date at job start Mon Mar 30 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 H 1.08997 * 109.46868 * 54.84152 * 3 2 1 5 5 C 1.50694 * 109.47027 * 174.84527 * 3 2 1 6 6 H 1.07998 * 119.99822 * 114.65700 * 5 3 2 7 7 C 1.37871 * 120.00254 * 294.64737 * 5 3 2 8 8 N 1.31519 * 119.99780 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00131 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47103 * 90.00301 * 9 7 5 11 11 H 1.48500 * 109.47382 * 210.00403 * 9 7 5 12 12 H 1.48502 * 109.47257 * 330.00046 * 9 7 5 13 13 N 1.46906 * 109.46919 * 294.84918 * 3 2 1 14 14 C 1.48568 * 110.99644 * 299.29849 * 13 3 2 15 15 C 1.54377 * 104.59177 * 200.95948 * 14 13 3 16 16 C 1.54257 * 105.06140 * 23.85750 * 15 14 13 17 17 H 1.08999 * 110.32428 * 240.99672 * 16 15 14 18 18 C 1.53003 * 110.32682 * 118.89041 * 16 15 14 19 19 C 1.53006 * 109.46749 * 66.45282 * 18 16 15 20 20 N 1.46899 * 109.46706 * 179.97438 * 19 18 16 21 21 C 1.48557 * 110.99636 * 183.88575 * 13 3 2 22 22 H 1.08994 * 109.46868 * 295.29902 * 1 2 3 23 23 H 1.08997 * 109.47127 * 55.30028 * 1 2 3 24 24 H 1.08997 * 109.46836 * 175.29999 * 1 2 3 25 25 H 1.09001 * 109.47045 * 239.99627 * 2 1 3 26 26 H 1.09000 * 109.46982 * 120.00398 * 2 1 3 27 27 H 0.96999 * 119.99394 * 179.97438 * 8 7 5 28 28 H 1.08996 * 110.40697 * 82.18516 * 14 13 3 29 29 H 1.08996 * 110.40894 * 319.74349 * 14 13 3 30 30 H 1.08993 * 110.32748 * 264.95690 * 15 14 13 31 31 H 1.09005 * 110.40513 * 142.79401 * 15 14 13 32 32 H 1.08999 * 109.47457 * 306.45660 * 18 16 15 33 33 H 1.08996 * 109.47249 * 186.45153 * 18 16 15 34 34 H 1.08996 * 109.47177 * 60.00374 * 19 18 16 35 35 H 1.08996 * 109.47140 * 299.99938 * 19 18 16 36 36 H 1.00906 * 110.99572 * 179.97438 * 20 19 18 37 37 H 1.00900 * 111.00785 * 303.95201 * 20 19 18 38 38 H 1.08994 * 110.41446 * 40.25931 * 21 13 3 39 39 H 1.09005 * 110.41015 * 277.80876 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6033 1.9822 0.8402 5 6 3.5416 1.4443 0.1276 6 1 4.1522 1.8095 -0.6849 7 6 4.1360 0.9799 1.2818 8 7 3.3925 0.5349 2.2711 9 14 5.9972 0.9828 1.4402 10 1 6.4421 2.2729 2.0259 11 1 6.4207 -0.1337 2.3229 12 1 6.6086 0.8116 0.0978 13 7 1.6546 2.0981 -1.2568 14 6 2.2468 1.3981 -2.4259 15 6 2.2280 2.4475 -3.5580 16 6 2.2058 3.8122 -2.8392 17 1 1.3022 4.3630 -3.1004 18 6 3.4481 4.6265 -3.2062 19 6 3.3954 4.9964 -4.6899 20 7 4.5878 5.7787 -5.0421 21 6 2.2130 3.4726 -1.3332 22 1 -0.3633 0.4391 0.9291 23 1 -0.3633 0.5850 -0.8449 24 1 -0.3633 -1.0242 -0.0842 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8107 0.2078 3.0829 28 1 1.6409 0.5341 -2.6984 29 1 3.2700 1.0925 -2.2076 30 1 1.3345 2.3277 -4.1705 31 1 3.1231 2.3584 -4.1737 32 1 4.3418 4.0337 -3.0111 33 1 3.4770 5.5357 -2.6059 34 1 2.5018 5.5892 -4.8851 35 1 3.3665 4.0871 -5.2903 36 1 4.5768 6.0351 -6.0180 37 1 4.6717 6.5946 -4.4545 38 1 3.2309 3.4916 -0.9441 39 1 1.5816 4.1705 -0.7832 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723684048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:35 Heat of formation + Delta-G solvation = -14.867804 kcal Electronic energy + Delta-G solvation = -16620.042909 eV Core-core repulsion = 14175.547648 eV Total energy + Delta-G solvation = -2444.495261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.67379 -35.76193 -33.81803 -31.76929 -30.44767 -28.79409 -26.78027 -25.48921 -22.96378 -22.08332 -20.93924 -19.51232 -18.53947 -16.53857 -16.06532 -15.33572 -14.79934 -14.58699 -14.10454 -13.63608 -13.28319 -12.91788 -12.44644 -12.13340 -12.08987 -11.59343 -11.43692 -11.34795 -11.03623 -10.85999 -10.58254 -10.49082 -10.18545 -10.16810 -9.90233 -9.83531 -9.65005 -9.40736 -9.07358 -8.74359 -8.34356 -7.16010 -5.98092 -4.09125 3.28286 3.35669 3.39004 4.41746 4.50458 5.04509 5.19026 5.23018 5.28100 5.46673 5.57449 5.65580 5.78085 6.02722 6.12109 6.18166 6.33730 6.38661 6.43729 6.47923 6.51369 6.65165 6.70228 6.80942 6.92676 6.99703 7.07867 7.08994 7.20169 7.31978 7.35726 7.62121 7.74659 7.97489 8.16590 8.25811 8.45342 9.01827 9.57389 11.03384 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022351 B = 0.008987 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.424425 B = 3115.027461 C = 4059.893367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.201 3.799 4 H 0.042 0.958 5 C -0.542 4.542 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.510 5.510 14 C 0.036 3.964 15 C -0.120 4.120 16 C -0.090 4.090 17 H 0.065 0.935 18 C -0.109 4.109 19 C 0.061 3.939 20 N -0.854 5.854 21 C 0.041 3.959 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.025 0.975 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.261 0.739 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.337 0.663 37 H 0.339 0.661 38 H 0.063 0.937 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 6.258 -10.460 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.581 4.581 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.092 4.092 15 C -0.158 4.158 16 C -0.110 4.110 17 H 0.083 0.917 18 C -0.147 4.147 19 C -0.069 4.069 20 N -0.383 5.383 21 C -0.088 4.088 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.918 5.500 -10.054 11.619 hybrid contribution 1.282 0.690 0.073 1.457 sum -0.637 6.190 -9.980 11.761 Atomic orbital electron populations 1.21732 0.98772 0.98540 1.00721 1.21526 0.92374 0.99237 1.01313 1.19381 0.93212 0.91158 0.86811 0.94025 1.21698 0.92785 1.42439 1.01130 0.92308 1.24915 0.97702 0.95024 0.95790 1.69922 1.34792 1.42059 1.05587 0.86713 0.86342 0.77649 0.78044 1.20714 1.21221 1.19960 1.65731 1.52447 1.01298 1.03922 1.22944 0.99390 0.96099 0.90787 1.22408 1.00498 0.95081 0.97835 1.21870 0.96723 0.95639 0.96742 0.91661 1.21636 0.98902 1.00033 0.94175 1.21873 0.89958 0.97515 0.97571 1.58714 1.42924 1.28126 1.08509 1.23006 1.00074 0.92381 0.93295 0.94163 0.93118 0.95587 0.94887 0.90051 0.92938 0.92017 0.92559 0.92486 0.92225 0.91004 0.92444 0.95974 0.90955 0.85148 0.84943 0.91920 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.86 37.16 0.37 -2.53 16 2 C -0.11 -2.53 5.15 -26.73 -0.14 -2.67 16 3 C 0.20 5.00 1.80 -68.87 -0.12 4.88 16 4 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 5 C -0.54 -14.43 6.42 -34.45 -0.22 -14.66 16 6 H 0.06 1.58 5.70 -52.49 -0.30 1.28 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -25.12 11.71 55.43 0.65 -24.47 16 9 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.51 -10.94 4.81 -223.41 -1.08 -12.02 16 14 C 0.04 0.71 5.16 -2.18 -0.01 0.70 16 15 C -0.12 -1.93 6.14 -25.35 -0.16 -2.08 16 16 C -0.09 -1.42 3.09 -89.23 -0.28 -1.70 16 17 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -1.56 4.67 -26.73 -0.12 -1.68 16 19 C 0.06 0.73 6.61 -3.82 -0.03 0.71 16 20 N -0.85 -9.31 9.62 -10.37 -0.10 -9.41 16 21 C 0.04 0.80 5.82 -2.18 -0.01 0.79 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.05 1.02 7.63 -51.93 -0.40 0.62 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.03 0.77 6.70 -51.93 -0.35 0.42 16 26 H 0.08 2.16 6.41 -51.93 -0.33 1.83 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.06 1.19 7.55 -51.93 -0.39 0.79 16 29 H 0.06 1.24 6.08 -51.93 -0.32 0.92 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.90 6.84 -51.93 -0.36 0.55 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.89 6.92 -51.93 -0.36 0.53 16 36 H 0.34 2.94 9.08 -39.29 -0.36 2.59 16 37 H 0.34 3.30 8.99 -39.29 -0.35 2.94 16 38 H 0.06 1.37 5.77 -51.93 -0.30 1.07 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -27.86 296.28 -8.65 -36.51 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.75 Total: 5.16 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.82 Total: -16.46 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.53 Total: -45.90 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.86 -8.65 -36.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723684048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.642 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds