Wall clock time and date at job start Mon Mar 30 2020 03:08:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52998 * 109.47388 * 2 1
4 4 H 1.08997 * 109.46868 * 54.84152 * 3 2 1
5 5 C 1.50694 * 109.47027 * 174.84527 * 3 2 1
6 6 H 1.07998 * 119.99822 * 114.65700 * 5 3 2
7 7 C 1.37871 * 120.00254 * 294.64737 * 5 3 2
8 8 N 1.31519 * 119.99780 * 0.02562 * 7 5 3
9 9 Si 1.86796 * 120.00131 * 180.02562 * 7 5 3
10 10 H 1.48499 * 109.47103 * 90.00301 * 9 7 5
11 11 H 1.48500 * 109.47382 * 210.00403 * 9 7 5
12 12 H 1.48502 * 109.47257 * 330.00046 * 9 7 5
13 13 N 1.46906 * 109.46919 * 294.84918 * 3 2 1
14 14 C 1.48568 * 110.99644 * 299.29849 * 13 3 2
15 15 C 1.54377 * 104.59177 * 200.95948 * 14 13 3
16 16 C 1.54257 * 105.06140 * 23.85750 * 15 14 13
17 17 H 1.08999 * 110.32428 * 240.99672 * 16 15 14
18 18 C 1.53003 * 110.32682 * 118.89041 * 16 15 14
19 19 C 1.53006 * 109.46749 * 66.45282 * 18 16 15
20 20 N 1.46899 * 109.46706 * 179.97438 * 19 18 16
21 21 C 1.48557 * 110.99636 * 183.88575 * 13 3 2
22 22 H 1.08994 * 109.46868 * 295.29902 * 1 2 3
23 23 H 1.08997 * 109.47127 * 55.30028 * 1 2 3
24 24 H 1.08997 * 109.46836 * 175.29999 * 1 2 3
25 25 H 1.09001 * 109.47045 * 239.99627 * 2 1 3
26 26 H 1.09000 * 109.46982 * 120.00398 * 2 1 3
27 27 H 0.96999 * 119.99394 * 179.97438 * 8 7 5
28 28 H 1.08996 * 110.40697 * 82.18516 * 14 13 3
29 29 H 1.08996 * 110.40894 * 319.74349 * 14 13 3
30 30 H 1.08993 * 110.32748 * 264.95690 * 15 14 13
31 31 H 1.09005 * 110.40513 * 142.79401 * 15 14 13
32 32 H 1.08999 * 109.47457 * 306.45660 * 18 16 15
33 33 H 1.08996 * 109.47249 * 186.45153 * 18 16 15
34 34 H 1.08996 * 109.47177 * 60.00374 * 19 18 16
35 35 H 1.08996 * 109.47140 * 299.99938 * 19 18 16
36 36 H 1.00906 * 110.99572 * 179.97438 * 20 19 18
37 37 H 1.00900 * 111.00785 * 303.95201 * 20 19 18
38 38 H 1.08994 * 110.41446 * 40.25931 * 21 13 3
39 39 H 1.09005 * 110.41015 * 277.80876 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6033 1.9822 0.8402
5 6 3.5416 1.4443 0.1276
6 1 4.1522 1.8095 -0.6849
7 6 4.1360 0.9799 1.2818
8 7 3.3925 0.5349 2.2711
9 14 5.9972 0.9828 1.4402
10 1 6.4421 2.2729 2.0259
11 1 6.4207 -0.1337 2.3229
12 1 6.6086 0.8116 0.0978
13 7 1.6546 2.0981 -1.2568
14 6 2.2468 1.3981 -2.4259
15 6 2.2280 2.4475 -3.5580
16 6 2.2058 3.8122 -2.8392
17 1 1.3022 4.3630 -3.1004
18 6 3.4481 4.6265 -3.2062
19 6 3.3954 4.9964 -4.6899
20 7 4.5878 5.7787 -5.0421
21 6 2.2130 3.4726 -1.3332
22 1 -0.3633 0.4391 0.9291
23 1 -0.3633 0.5850 -0.8449
24 1 -0.3633 -1.0242 -0.0842
25 1 1.8934 -0.5139 -0.8900
26 1 1.8934 -0.5139 0.8900
27 1 3.8107 0.2078 3.0829
28 1 1.6409 0.5341 -2.6984
29 1 3.2700 1.0925 -2.2076
30 1 1.3345 2.3277 -4.1705
31 1 3.1231 2.3584 -4.1737
32 1 4.3418 4.0337 -3.0111
33 1 3.4770 5.5357 -2.6059
34 1 2.5018 5.5892 -4.8851
35 1 3.3665 4.0871 -5.2903
36 1 4.5768 6.0351 -6.0180
37 1 4.6717 6.5946 -4.4545
38 1 3.2309 3.4916 -0.9441
39 1 1.5816 4.1705 -0.7832
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000723684048.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:35
Heat of formation + Delta-G solvation = -34.195976 kcal
Electronic energy + Delta-G solvation = -16620.881041 eV
Core-core repulsion = 14175.547648 eV
Total energy + Delta-G solvation = -2445.333393 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.24079 -37.12896 -35.31093 -33.69405 -31.93346 -30.30024 -28.46933 -27.09003
-24.79449 -23.31670 -22.50205 -21.12373 -20.15348 -18.46761 -17.25589 -17.03242
-16.21833 -15.89795 -15.64738 -15.00833 -14.85200 -14.59669 -14.14143 -13.82982
-13.56582 -13.29683 -12.89894 -12.78009 -12.65838 -12.60034 -12.42530 -12.16995
-11.80787 -11.68111 -11.53218 -11.46181 -11.28011 -11.15408 -10.97945 -10.44543
-9.57122 -9.00743 -8.06242 -6.25331 1.35060 1.37189 1.45937 2.38976
3.14875 3.45757 3.76051 3.87679 3.95549 4.27914 4.35319 4.39788
4.55931 4.65175 4.70279 4.76927 4.80311 4.87098 4.94178 5.02748
5.03482 5.13053 5.19132 5.26879 5.33149 5.39406 5.41881 5.47451
5.57671 5.64272 5.77547 5.98246 6.18751 6.27236 6.36205 6.51968
6.64512 6.96559 7.44109 8.92014
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022351 B = 0.008987 C = 0.006895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.424425 B = 3115.027461 C = 4059.893367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.101 4.101
3 C 0.208 3.792
4 H 0.003 0.997
5 C -0.545 4.545
6 H 0.052 0.948
7 C 0.020 3.980
8 N -0.914 5.914
9 Si 0.943 3.057
10 H -0.278 1.278
11 H -0.282 1.282
12 H -0.272 1.272
13 N -0.511 5.511
14 C 0.035 3.965
15 C -0.110 4.110
16 C -0.078 4.078
17 H 0.086 0.914
18 C -0.103 4.103
19 C 0.069 3.931
20 N -0.864 5.864
21 C 0.037 3.963
22 H 0.032 0.968
23 H 0.059 0.941
24 H 0.049 0.951
25 H 0.034 0.966
26 H 0.050 0.950
27 H 0.261 0.739
28 H 0.067 0.933
29 H 0.027 0.973
30 H 0.080 0.920
31 H 0.070 0.930
32 H 0.045 0.955
33 H 0.060 0.940
34 H 0.038 0.962
35 H 0.072 0.928
36 H 0.351 0.649
37 H 0.345 0.655
38 H 0.034 0.966
39 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.920 6.966 -12.480 14.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.139 4.139
3 C 0.100 3.900
4 H 0.021 0.979
5 C -0.584 4.584
6 H 0.071 0.929
7 C -0.180 4.180
8 N -0.553 5.553
9 Si 0.770 3.230
10 H -0.203 1.203
11 H -0.208 1.208
12 H -0.197 1.197
13 N -0.234 5.234
14 C -0.093 4.093
15 C -0.148 4.148
16 C -0.098 4.098
17 H 0.104 0.896
18 C -0.141 4.141
19 C -0.062 4.062
20 N -0.395 5.395
21 C -0.091 4.091
22 H 0.051 0.949
23 H 0.078 0.922
24 H 0.068 0.932
25 H 0.053 0.947
26 H 0.068 0.932
27 H 0.070 0.930
28 H 0.085 0.915
29 H 0.046 0.954
30 H 0.099 0.901
31 H 0.089 0.911
32 H 0.064 0.936
33 H 0.079 0.921
34 H 0.057 0.943
35 H 0.090 0.910
36 H 0.164 0.836
37 H 0.158 0.842
38 H 0.052 0.948
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -2.102 6.221 -12.096 13.763
hybrid contribution 1.328 0.494 0.704 1.582
sum -0.774 6.715 -11.392 13.246
Atomic orbital electron populations
1.21593 0.96110 1.00165 1.00669 1.21374 0.94714 0.98090 0.99753
1.19137 0.92014 0.91547 0.87305 0.97939 1.21918 0.93924 1.41734
1.00867 0.92947 1.25615 1.01675 0.95018 0.95679 1.70041 1.36296
1.42961 1.05981 0.85784 0.81614 0.77683 0.77969 1.20344 1.20801
1.19673 1.65655 1.52519 1.02131 1.03068 1.22961 0.97548 0.97449
0.91361 1.22368 1.02243 0.93477 0.96676 1.21797 0.98442 0.96120
0.93415 0.89583 1.21537 0.96854 0.99438 0.96295 1.21736 0.91065
0.98017 0.95391 1.58660 1.42510 1.28642 1.09733 1.23044 0.98151
0.91515 0.96434 0.94910 0.92243 0.93231 0.94734 0.93158 0.92980
0.91482 0.95448 0.90114 0.91090 0.93567 0.92079 0.94350 0.90968
0.83586 0.84222 0.94811 0.92262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.20 9.86 71.98 0.71 -4.49 16
2 C -0.10 -4.88 5.15 30.60 0.16 -4.72 16
3 C 0.21 10.61 1.80 44.17 0.08 10.69 16
4 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16
5 C -0.55 -29.89 6.42 25.60 0.16 -29.73 16
6 H 0.05 2.89 5.70 -2.91 -0.02 2.87 16
7 C 0.02 1.11 5.30 84.65 0.45 1.56 16
8 N -0.91 -53.27 11.71 21.45 0.25 -53.01 16
9 Si 0.94 44.35 29.54 68.60 2.03 46.38 16
10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
13 N -0.51 -21.88 4.81 -860.72 -4.14 -26.03 16
14 C 0.04 1.35 5.16 86.45 0.45 1.80 16
15 C -0.11 -3.24 6.14 31.49 0.19 -3.04 16
16 C -0.08 -2.31 3.09 -9.90 -0.03 -2.34 16
17 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16
18 C -0.10 -2.75 4.67 30.60 0.14 -2.61 16
19 C 0.07 1.43 6.61 86.31 0.57 2.00 16
20 N -0.86 -16.63 9.62 -186.72 -1.80 -18.43 16
21 C 0.04 1.46 5.82 86.45 0.50 1.96 16
22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16
23 H 0.06 2.29 7.63 -2.39 -0.02 2.28 16
24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
25 H 0.03 1.62 6.70 -2.39 -0.02 1.60 16
26 H 0.05 2.74 6.41 -2.39 -0.02 2.73 16
27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16
28 H 0.07 2.48 7.55 -2.39 -0.02 2.47 16
29 H 0.03 1.21 6.08 -2.39 -0.01 1.20 16
30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
31 H 0.07 1.96 6.84 -2.38 -0.02 1.95 16
32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16
35 H 0.07 1.53 6.92 -2.39 -0.02 1.51 16
36 H 0.35 5.14 9.08 -89.69 -0.81 4.32 16
37 H 0.35 5.90 8.99 -89.69 -0.81 5.10 16
38 H 0.03 1.52 5.77 -2.39 -0.01 1.50 16
39 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16
Total: -1.00 -60.74 296.28 -0.87 -61.61
By element:
Atomic # 1 Polarization: 18.98 SS G_CDS: -0.59 Total: 18.39 kcal
Atomic # 6 Polarization: -32.30 SS G_CDS: 3.38 Total: -28.91 kcal
Atomic # 7 Polarization: -91.78 SS G_CDS: -5.69 Total: -97.47 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal
Total: -60.74 -0.87 -61.61 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723684048.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.418 kcal
(2) G-P(sol) polarization free energy of solvation -60.744 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.196 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds