Wall clock time and date at job start Mon Mar 30 2020 03:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 H 1.08997 * 109.46868 * 54.84152 * 3 2 1 5 5 C 1.50694 * 109.47027 * 174.84527 * 3 2 1 6 6 H 1.07998 * 119.99822 * 114.65700 * 5 3 2 7 7 C 1.37871 * 120.00254 * 294.64737 * 5 3 2 8 8 N 1.31519 * 119.99780 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00131 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47103 * 90.00301 * 9 7 5 11 11 H 1.48500 * 109.47382 * 210.00403 * 9 7 5 12 12 H 1.48502 * 109.47257 * 330.00046 * 9 7 5 13 13 N 1.46906 * 109.46919 * 294.84918 * 3 2 1 14 14 C 1.48568 * 110.99644 * 299.29849 * 13 3 2 15 15 C 1.54377 * 104.59177 * 200.95948 * 14 13 3 16 16 C 1.54257 * 105.06140 * 23.85750 * 15 14 13 17 17 H 1.08999 * 110.32428 * 240.99672 * 16 15 14 18 18 C 1.53003 * 110.32682 * 118.89041 * 16 15 14 19 19 C 1.53006 * 109.46749 * 66.45282 * 18 16 15 20 20 N 1.46899 * 109.46706 * 179.97438 * 19 18 16 21 21 C 1.48557 * 110.99636 * 183.88575 * 13 3 2 22 22 H 1.08994 * 109.46868 * 295.29902 * 1 2 3 23 23 H 1.08997 * 109.47127 * 55.30028 * 1 2 3 24 24 H 1.08997 * 109.46836 * 175.29999 * 1 2 3 25 25 H 1.09001 * 109.47045 * 239.99627 * 2 1 3 26 26 H 1.09000 * 109.46982 * 120.00398 * 2 1 3 27 27 H 0.96999 * 119.99394 * 179.97438 * 8 7 5 28 28 H 1.08996 * 110.40697 * 82.18516 * 14 13 3 29 29 H 1.08996 * 110.40894 * 319.74349 * 14 13 3 30 30 H 1.08993 * 110.32748 * 264.95690 * 15 14 13 31 31 H 1.09005 * 110.40513 * 142.79401 * 15 14 13 32 32 H 1.08999 * 109.47457 * 306.45660 * 18 16 15 33 33 H 1.08996 * 109.47249 * 186.45153 * 18 16 15 34 34 H 1.08996 * 109.47177 * 60.00374 * 19 18 16 35 35 H 1.08996 * 109.47140 * 299.99938 * 19 18 16 36 36 H 1.00906 * 110.99572 * 179.97438 * 20 19 18 37 37 H 1.00900 * 111.00785 * 303.95201 * 20 19 18 38 38 H 1.08994 * 110.41446 * 40.25931 * 21 13 3 39 39 H 1.09005 * 110.41015 * 277.80876 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6033 1.9822 0.8402 5 6 3.5416 1.4443 0.1276 6 1 4.1522 1.8095 -0.6849 7 6 4.1360 0.9799 1.2818 8 7 3.3925 0.5349 2.2711 9 14 5.9972 0.9828 1.4402 10 1 6.4421 2.2729 2.0259 11 1 6.4207 -0.1337 2.3229 12 1 6.6086 0.8116 0.0978 13 7 1.6546 2.0981 -1.2568 14 6 2.2468 1.3981 -2.4259 15 6 2.2280 2.4475 -3.5580 16 6 2.2058 3.8122 -2.8392 17 1 1.3022 4.3630 -3.1004 18 6 3.4481 4.6265 -3.2062 19 6 3.3954 4.9964 -4.6899 20 7 4.5878 5.7787 -5.0421 21 6 2.2130 3.4726 -1.3332 22 1 -0.3633 0.4391 0.9291 23 1 -0.3633 0.5850 -0.8449 24 1 -0.3633 -1.0242 -0.0842 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8107 0.2078 3.0829 28 1 1.6409 0.5341 -2.6984 29 1 3.2700 1.0925 -2.2076 30 1 1.3345 2.3277 -4.1705 31 1 3.1231 2.3584 -4.1737 32 1 4.3418 4.0337 -3.0111 33 1 3.4770 5.5357 -2.6059 34 1 2.5018 5.5892 -4.8851 35 1 3.3665 4.0871 -5.2903 36 1 4.5768 6.0351 -6.0180 37 1 4.6717 6.5946 -4.4545 38 1 3.2309 3.4916 -0.9441 39 1 1.5816 4.1705 -0.7832 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723684048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:35 Heat of formation + Delta-G solvation = -34.195976 kcal Electronic energy + Delta-G solvation = -16620.881041 eV Core-core repulsion = 14175.547648 eV Total energy + Delta-G solvation = -2445.333393 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24079 -37.12896 -35.31093 -33.69405 -31.93346 -30.30024 -28.46933 -27.09003 -24.79449 -23.31670 -22.50205 -21.12373 -20.15348 -18.46761 -17.25589 -17.03242 -16.21833 -15.89795 -15.64738 -15.00833 -14.85200 -14.59669 -14.14143 -13.82982 -13.56582 -13.29683 -12.89894 -12.78009 -12.65838 -12.60034 -12.42530 -12.16995 -11.80787 -11.68111 -11.53218 -11.46181 -11.28011 -11.15408 -10.97945 -10.44543 -9.57122 -9.00743 -8.06242 -6.25331 1.35060 1.37189 1.45937 2.38976 3.14875 3.45757 3.76051 3.87679 3.95549 4.27914 4.35319 4.39788 4.55931 4.65175 4.70279 4.76927 4.80311 4.87098 4.94178 5.02748 5.03482 5.13053 5.19132 5.26879 5.33149 5.39406 5.41881 5.47451 5.57671 5.64272 5.77547 5.98246 6.18751 6.27236 6.36205 6.51968 6.64512 6.96559 7.44109 8.92014 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022351 B = 0.008987 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.424425 B = 3115.027461 C = 4059.893367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C 0.208 3.792 4 H 0.003 0.997 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.511 5.511 14 C 0.035 3.965 15 C -0.110 4.110 16 C -0.078 4.078 17 H 0.086 0.914 18 C -0.103 4.103 19 C 0.069 3.931 20 N -0.864 5.864 21 C 0.037 3.963 22 H 0.032 0.968 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.261 0.739 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.351 0.649 37 H 0.345 0.655 38 H 0.034 0.966 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 6.966 -12.480 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.139 4.139 3 C 0.100 3.900 4 H 0.021 0.979 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.234 5.234 14 C -0.093 4.093 15 C -0.148 4.148 16 C -0.098 4.098 17 H 0.104 0.896 18 C -0.141 4.141 19 C -0.062 4.062 20 N -0.395 5.395 21 C -0.091 4.091 22 H 0.051 0.949 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.102 6.221 -12.096 13.763 hybrid contribution 1.328 0.494 0.704 1.582 sum -0.774 6.715 -11.392 13.246 Atomic orbital electron populations 1.21593 0.96110 1.00165 1.00669 1.21374 0.94714 0.98090 0.99753 1.19137 0.92014 0.91547 0.87305 0.97939 1.21918 0.93924 1.41734 1.00867 0.92947 1.25615 1.01675 0.95018 0.95679 1.70041 1.36296 1.42961 1.05981 0.85784 0.81614 0.77683 0.77969 1.20344 1.20801 1.19673 1.65655 1.52519 1.02131 1.03068 1.22961 0.97548 0.97449 0.91361 1.22368 1.02243 0.93477 0.96676 1.21797 0.98442 0.96120 0.93415 0.89583 1.21537 0.96854 0.99438 0.96295 1.21736 0.91065 0.98017 0.95391 1.58660 1.42510 1.28642 1.09733 1.23044 0.98151 0.91515 0.96434 0.94910 0.92243 0.93231 0.94734 0.93158 0.92980 0.91482 0.95448 0.90114 0.91090 0.93567 0.92079 0.94350 0.90968 0.83586 0.84222 0.94811 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 9.86 71.98 0.71 -4.49 16 2 C -0.10 -4.88 5.15 30.60 0.16 -4.72 16 3 C 0.21 10.61 1.80 44.17 0.08 10.69 16 4 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 5 C -0.55 -29.89 6.42 25.60 0.16 -29.73 16 6 H 0.05 2.89 5.70 -2.91 -0.02 2.87 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -53.27 11.71 21.45 0.25 -53.01 16 9 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.51 -21.88 4.81 -860.72 -4.14 -26.03 16 14 C 0.04 1.35 5.16 86.45 0.45 1.80 16 15 C -0.11 -3.24 6.14 31.49 0.19 -3.04 16 16 C -0.08 -2.31 3.09 -9.90 -0.03 -2.34 16 17 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 18 C -0.10 -2.75 4.67 30.60 0.14 -2.61 16 19 C 0.07 1.43 6.61 86.31 0.57 2.00 16 20 N -0.86 -16.63 9.62 -186.72 -1.80 -18.43 16 21 C 0.04 1.46 5.82 86.45 0.50 1.96 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 2.29 7.63 -2.39 -0.02 2.28 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.03 1.62 6.70 -2.39 -0.02 1.60 16 26 H 0.05 2.74 6.41 -2.39 -0.02 2.73 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.07 2.48 7.55 -2.39 -0.02 2.47 16 29 H 0.03 1.21 6.08 -2.39 -0.01 1.20 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.96 6.84 -2.38 -0.02 1.95 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 1.53 6.92 -2.39 -0.02 1.51 16 36 H 0.35 5.14 9.08 -89.69 -0.81 4.32 16 37 H 0.35 5.90 8.99 -89.69 -0.81 5.10 16 38 H 0.03 1.52 5.77 -2.39 -0.01 1.50 16 39 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -60.74 296.28 -0.87 -61.61 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.59 Total: 18.39 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.38 Total: -28.91 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -5.69 Total: -97.47 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -60.74 -0.87 -61.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723684048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.418 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds