Wall clock time and date at job start Mon Mar 30 2020 03:09:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52995 * 109.47148 * 2 1
4 4 H 1.09003 * 109.47515 * 54.99301 * 3 2 1
5 5 C 1.50697 * 109.47204 * 174.99902 * 3 2 1
6 6 H 1.07999 * 119.99839 * 119.99853 * 5 3 2
7 7 C 1.37873 * 120.00037 * 299.99593 * 5 3 2
8 8 N 1.31516 * 120.00074 * 0.02562 * 7 5 3
9 9 Si 1.86801 * 120.00206 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.46868 * 0.02562 * 9 7 5
11 11 H 1.48504 * 109.47237 * 120.00089 * 9 7 5
12 12 H 1.48497 * 109.47149 * 240.00323 * 9 7 5
13 13 N 1.46907 * 109.46849 * 294.99749 * 3 2 1
14 14 C 1.48539 * 110.99887 * 180.02562 * 13 3 2
15 15 C 1.54937 * 103.22665 * 159.72136 * 14 13 3
16 16 H 1.09001 * 110.72268 * 80.94231 * 15 14 13
17 17 C 1.52995 * 110.72594 * 204.22747 * 15 14 13
18 18 N 1.46898 * 109.47083 * 288.50368 * 17 15 14
19 19 C 1.54596 * 102.92157 * 322.58789 * 15 14 13
20 20 H 1.08999 * 110.30578 * 262.94539 * 19 15 14
21 21 C 1.52997 * 110.31173 * 140.87390 * 19 15 14
22 22 C 1.47899 * 111.00112 * 297.39391 * 13 3 2
23 23 H 1.08999 * 109.46934 * 60.00450 * 1 2 3
24 24 H 1.09004 * 109.46782 * 180.02562 * 1 2 3
25 25 H 1.08997 * 109.47027 * 300.00294 * 1 2 3
26 26 H 1.08997 * 109.47027 * 239.99706 * 2 1 3
27 27 H 1.08999 * 109.46934 * 119.99550 * 2 1 3
28 28 H 0.96994 * 120.00250 * 180.02562 * 8 7 5
29 29 H 1.09002 * 110.66446 * 41.28673 * 14 13 3
30 30 H 1.09003 * 110.80986 * 278.22449 * 14 13 3
31 31 H 1.09009 * 109.46682 * 48.49969 * 17 15 14
32 32 H 1.08995 * 109.47740 * 168.49975 * 17 15 14
33 33 H 1.00899 * 111.00298 * 56.04624 * 18 17 15
34 34 H 1.00902 * 111.00045 * 180.02562 * 18 17 15
35 35 H 1.09002 * 109.47153 * 59.99737 * 21 19 15
36 36 H 1.09001 * 109.46832 * 299.99928 * 21 19 15
37 37 H 1.09004 * 109.47261 * 179.97438 * 21 19 15
38 38 H 1.09004 * 109.91383 * 94.80156 * 22 13 3
39 39 H 1.08997 * 109.91527 * 333.51540 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4443 0.1239
6 1 4.1472 1.8888 -0.6523
7 6 4.1432 0.8785 1.2280
8 7 3.4062 0.3367 2.1729
9 14 6.0050 0.8801 1.3812
10 1 6.5988 1.5452 0.1937
11 1 6.4000 1.6158 2.6092
12 1 6.4961 -0.5190 1.4628
13 7 1.6514 2.0992 -1.2553
14 6 2.1311 3.5045 -1.2915
15 6 2.1159 3.8455 -2.8029
16 1 1.1096 4.1087 -3.1288
17 6 3.0999 4.9752 -3.1130
18 7 2.5776 6.2399 -2.5786
19 6 2.5755 2.5238 -3.4600
20 1 3.6436 2.5596 -3.6749
21 6 1.7847 2.2661 -4.7442
22 6 2.2747 1.4309 -2.4182
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5139 0.8899
26 1 1.8933 -0.5139 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.8292 -0.0610 2.9499
29 1 3.1424 3.5762 -0.8911
30 1 1.4540 4.1591 -0.7427
31 1 4.0625 4.7555 -2.6510
32 1 3.2261 5.0612 -4.1922
33 1 2.3912 6.1652 -1.5898
34 1 3.2099 7.0024 -2.7711
35 1 1.9487 3.0866 -5.4427
36 1 0.7227 2.1959 -4.5090
37 1 2.1197 1.3323 -5.1960
38 1 1.5861 0.6976 -2.8381
39 1 3.2006 0.9429 -2.1137
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000723861661.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:40
Heat of formation + Delta-G solvation = -14.193655 kcal
Electronic energy + Delta-G solvation = -16918.215404 eV
Core-core repulsion = 14473.749376 eV
Total energy + Delta-G solvation = -2444.466028 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.89612 -35.36990 -33.49113 -31.84553 -30.83464 -28.51645 -26.57310 -25.25978
-23.85429 -22.20766 -20.48821 -19.66243 -18.57359 -16.50952 -15.89041 -15.02011
-14.92424 -14.24186 -13.79571 -13.34162 -13.16886 -12.77501 -12.68834 -12.38029
-12.25700 -11.84221 -11.44340 -11.39237 -11.09472 -10.85180 -10.58762 -10.45852
-10.17072 -10.03798 -9.96861 -9.88316 -9.63070 -9.41976 -9.04932 -8.55829
-8.37084 -7.14476 -6.00317 -4.13135 3.22543 3.31587 3.33762 4.36826
4.70250 5.07397 5.17509 5.24889 5.29536 5.49857 5.67435 5.72785
5.87039 6.06111 6.10165 6.18569 6.32760 6.37803 6.42346 6.49505
6.54489 6.63928 6.70576 6.81368 6.88459 6.98784 7.10425 7.21239
7.28570 7.33831 7.55974 7.62586 7.74724 7.99847 8.16072 8.27027
8.45659 8.97966 9.53371 10.98858
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.021715 B = 0.010034 C = 0.008203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.093737 B = 2789.852317 C = 3412.704224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.110 4.110
3 C 0.204 3.796
4 H 0.038 0.962
5 C -0.540 4.540
6 H 0.057 0.943
7 C 0.068 3.932
8 N -0.884 5.884
9 Si 0.885 3.115
10 H -0.276 1.276
11 H -0.284 1.284
12 H -0.284 1.284
13 N -0.513 5.513
14 C 0.044 3.956
15 C -0.087 4.087
16 H 0.082 0.918
17 C 0.071 3.929
18 N -0.852 5.852
19 C -0.099 4.099
20 H 0.064 0.936
21 C -0.136 4.136
22 C 0.045 3.955
23 H 0.047 0.953
24 H 0.025 0.975
25 H 0.039 0.961
26 H 0.031 0.969
27 H 0.091 0.909
28 H 0.260 0.740
29 H 0.054 0.946
30 H 0.062 0.938
31 H 0.026 0.974
32 H 0.064 0.936
33 H 0.343 0.657
34 H 0.334 0.666
35 H 0.046 0.954
36 H 0.056 0.944
37 H 0.049 0.951
38 H 0.059 0.941
39 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.147 5.122 -8.618 10.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.148 4.148
3 C 0.097 3.903
4 H 0.056 0.944
5 C -0.579 4.579
6 H 0.075 0.925
7 C -0.135 4.135
8 N -0.522 5.522
9 Si 0.713 3.287
10 H -0.200 1.200
11 H -0.210 1.210
12 H -0.210 1.210
13 N -0.237 5.237
14 C -0.084 4.084
15 C -0.106 4.106
16 H 0.100 0.900
17 C -0.060 4.060
18 N -0.381 5.381
19 C -0.119 4.119
20 H 0.082 0.918
21 C -0.193 4.193
22 C -0.084 4.084
23 H 0.066 0.934
24 H 0.044 0.956
25 H 0.058 0.942
26 H 0.049 0.951
27 H 0.109 0.891
28 H 0.070 0.930
29 H 0.072 0.928
30 H 0.080 0.920
31 H 0.044 0.956
32 H 0.083 0.917
33 H 0.156 0.844
34 H 0.146 0.854
35 H 0.065 0.935
36 H 0.075 0.925
37 H 0.068 0.932
38 H 0.077 0.923
39 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -2.320 4.860 -8.952 10.447
hybrid contribution 2.921 -0.077 0.902 3.058
sum 0.601 4.783 -8.050 9.383
Atomic orbital electron populations
1.21712 0.98863 0.98381 1.00603 1.21567 0.92268 0.99144 1.01869
1.19401 0.93008 0.91305 0.86619 0.94439 1.21743 0.92853 1.37936
1.05357 0.92490 1.24916 0.97698 0.95109 0.95762 1.69886 1.34633
1.38287 1.09399 0.86657 0.86361 0.77762 0.77914 1.20029 1.21042
1.20967 1.65092 1.53586 1.00998 1.04009 1.23110 0.99591 0.91959
0.93779 1.22187 0.99066 0.92779 0.96589 0.90007 1.21814 0.95722
0.89296 0.99169 1.58766 1.51912 1.05772 1.21611 1.22007 0.99002
0.95401 0.95442 0.91792 1.21792 1.00414 1.00433 0.96695 1.22786
0.98933 0.95705 0.90964 0.93378 0.95633 0.94222 0.95067 0.89055
0.92956 0.92809 0.91981 0.95585 0.91712 0.84433 0.85433 0.93480
0.92453 0.93215 0.92294 0.92131
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.87 9.80 37.16 0.36 -2.51 16
2 C -0.11 -2.63 5.16 -26.73 -0.14 -2.77 16
3 C 0.20 5.01 1.82 -68.86 -0.13 4.88 16
4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16
5 C -0.54 -14.20 6.32 -34.44 -0.22 -14.42 16
6 H 0.06 1.51 6.04 -52.49 -0.32 1.19 16
7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16
8 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16
9 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16
10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
13 N -0.51 -10.90 4.76 -223.90 -1.07 -11.96 16
14 C 0.04 0.85 5.20 -1.89 -0.01 0.84 16
15 C -0.09 -1.40 2.82 -88.76 -0.25 -1.65 16
16 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16
17 C 0.07 1.00 6.15 -3.83 -0.02 0.98 16
18 N -0.85 -10.91 9.62 -10.37 -0.10 -11.01 16
19 C -0.10 -1.61 3.17 -89.28 -0.28 -1.89 16
20 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16
21 C -0.14 -1.86 8.88 37.16 0.33 -1.53 16
22 C 0.04 0.87 4.68 -2.77 -0.01 0.86 16
23 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16
24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
26 H 0.03 0.73 7.04 -51.93 -0.37 0.37 16
27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16
28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16
29 H 0.05 1.15 6.06 -51.93 -0.31 0.83 16
30 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16
31 H 0.03 0.39 7.99 -51.92 -0.42 -0.03 16
32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.34 4.43 8.39 -39.29 -0.33 4.10 16
34 H 0.33 3.54 9.08 -39.29 -0.36 3.18 16
35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.06 1.12 7.63 -51.93 -0.40 0.73 16
39 H 0.06 1.34 6.02 -51.93 -0.31 1.03 16
LS Contribution 296.89 15.07 4.47 4.47
Total: -1.00 -27.16 296.89 -8.40 -35.56
By element:
Atomic # 1 Polarization: 13.44 SS G_CDS: -6.85 Total: 6.59 kcal
Atomic # 6 Polarization: -15.02 SS G_CDS: -0.46 Total: -15.48 kcal
Atomic # 7 Polarization: -46.51 SS G_CDS: -0.54 Total: -47.05 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -27.16 -8.40 -35.56 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723861661.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.362 kcal
(2) G-P(sol) polarization free energy of solvation -27.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds