Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 H 1.09003 * 109.47515 * 54.99301 * 3 2 1 5 5 C 1.50697 * 109.47204 * 174.99902 * 3 2 1 6 6 H 1.07999 * 119.99839 * 119.99853 * 5 3 2 7 7 C 1.37873 * 120.00037 * 299.99593 * 5 3 2 8 8 N 1.31516 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00206 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46868 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47237 * 120.00089 * 9 7 5 12 12 H 1.48497 * 109.47149 * 240.00323 * 9 7 5 13 13 N 1.46907 * 109.46849 * 294.99749 * 3 2 1 14 14 C 1.48539 * 110.99887 * 180.02562 * 13 3 2 15 15 C 1.54937 * 103.22665 * 159.72136 * 14 13 3 16 16 H 1.09001 * 110.72268 * 80.94231 * 15 14 13 17 17 C 1.52995 * 110.72594 * 204.22747 * 15 14 13 18 18 N 1.46898 * 109.47083 * 288.50368 * 17 15 14 19 19 C 1.54596 * 102.92157 * 322.58789 * 15 14 13 20 20 H 1.08999 * 110.30578 * 262.94539 * 19 15 14 21 21 C 1.52997 * 110.31173 * 140.87390 * 19 15 14 22 22 C 1.47899 * 111.00112 * 297.39391 * 13 3 2 23 23 H 1.08999 * 109.46934 * 60.00450 * 1 2 3 24 24 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47027 * 300.00294 * 1 2 3 26 26 H 1.08997 * 109.47027 * 239.99706 * 2 1 3 27 27 H 1.08999 * 109.46934 * 119.99550 * 2 1 3 28 28 H 0.96994 * 120.00250 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.66446 * 41.28673 * 14 13 3 30 30 H 1.09003 * 110.80986 * 278.22449 * 14 13 3 31 31 H 1.09009 * 109.46682 * 48.49969 * 17 15 14 32 32 H 1.08995 * 109.47740 * 168.49975 * 17 15 14 33 33 H 1.00899 * 111.00298 * 56.04624 * 18 17 15 34 34 H 1.00902 * 111.00045 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.47153 * 59.99737 * 21 19 15 36 36 H 1.09001 * 109.46832 * 299.99928 * 21 19 15 37 37 H 1.09004 * 109.47261 * 179.97438 * 21 19 15 38 38 H 1.09004 * 109.91383 * 94.80156 * 22 13 3 39 39 H 1.08997 * 109.91527 * 333.51540 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5452 0.1937 11 1 6.4000 1.6158 2.6092 12 1 6.4961 -0.5190 1.4628 13 7 1.6514 2.0992 -1.2553 14 6 2.1311 3.5045 -1.2915 15 6 2.1159 3.8455 -2.8029 16 1 1.1096 4.1087 -3.1288 17 6 3.0999 4.9752 -3.1130 18 7 2.5776 6.2399 -2.5786 19 6 2.5755 2.5238 -3.4600 20 1 3.6436 2.5596 -3.6749 21 6 1.7847 2.2661 -4.7442 22 6 2.2747 1.4309 -2.4182 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0610 2.9499 29 1 3.1424 3.5762 -0.8911 30 1 1.4540 4.1591 -0.7427 31 1 4.0625 4.7555 -2.6510 32 1 3.2261 5.0612 -4.1922 33 1 2.3912 6.1652 -1.5898 34 1 3.2099 7.0024 -2.7711 35 1 1.9487 3.0866 -5.4427 36 1 0.7227 2.1959 -4.5090 37 1 2.1197 1.3323 -5.1960 38 1 1.5861 0.6976 -2.8381 39 1 3.2006 0.9429 -2.1137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723861661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -14.193655 kcal Electronic energy + Delta-G solvation = -16918.215404 eV Core-core repulsion = 14473.749376 eV Total energy + Delta-G solvation = -2444.466028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.89612 -35.36990 -33.49113 -31.84553 -30.83464 -28.51645 -26.57310 -25.25978 -23.85429 -22.20766 -20.48821 -19.66243 -18.57359 -16.50952 -15.89041 -15.02011 -14.92424 -14.24186 -13.79571 -13.34162 -13.16886 -12.77501 -12.68834 -12.38029 -12.25700 -11.84221 -11.44340 -11.39237 -11.09472 -10.85180 -10.58762 -10.45852 -10.17072 -10.03798 -9.96861 -9.88316 -9.63070 -9.41976 -9.04932 -8.55829 -8.37084 -7.14476 -6.00317 -4.13135 3.22543 3.31587 3.33762 4.36826 4.70250 5.07397 5.17509 5.24889 5.29536 5.49857 5.67435 5.72785 5.87039 6.06111 6.10165 6.18569 6.32760 6.37803 6.42346 6.49505 6.54489 6.63928 6.70576 6.81368 6.88459 6.98784 7.10425 7.21239 7.28570 7.33831 7.55974 7.62586 7.74724 7.99847 8.16072 8.27027 8.45659 8.97966 9.53371 10.98858 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.010034 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.093737 B = 2789.852317 C = 3412.704224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.513 5.513 14 C 0.044 3.956 15 C -0.087 4.087 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.852 5.852 19 C -0.099 4.099 20 H 0.064 0.936 21 C -0.136 4.136 22 C 0.045 3.955 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.039 0.961 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.343 0.657 34 H 0.334 0.666 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 5.122 -8.618 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.056 0.944 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.237 5.237 14 C -0.084 4.084 15 C -0.106 4.106 16 H 0.100 0.900 17 C -0.060 4.060 18 N -0.381 5.381 19 C -0.119 4.119 20 H 0.082 0.918 21 C -0.193 4.193 22 C -0.084 4.084 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.320 4.860 -8.952 10.447 hybrid contribution 2.921 -0.077 0.902 3.058 sum 0.601 4.783 -8.050 9.383 Atomic orbital electron populations 1.21712 0.98863 0.98381 1.00603 1.21567 0.92268 0.99144 1.01869 1.19401 0.93008 0.91305 0.86619 0.94439 1.21743 0.92853 1.37936 1.05357 0.92490 1.24916 0.97698 0.95109 0.95762 1.69886 1.34633 1.38287 1.09399 0.86657 0.86361 0.77762 0.77914 1.20029 1.21042 1.20967 1.65092 1.53586 1.00998 1.04009 1.23110 0.99591 0.91959 0.93779 1.22187 0.99066 0.92779 0.96589 0.90007 1.21814 0.95722 0.89296 0.99169 1.58766 1.51912 1.05772 1.21611 1.22007 0.99002 0.95401 0.95442 0.91792 1.21792 1.00414 1.00433 0.96695 1.22786 0.98933 0.95705 0.90964 0.93378 0.95633 0.94222 0.95067 0.89055 0.92956 0.92809 0.91981 0.95585 0.91712 0.84433 0.85433 0.93480 0.92453 0.93215 0.92294 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.80 37.16 0.36 -2.51 16 2 C -0.11 -2.63 5.16 -26.73 -0.14 -2.77 16 3 C 0.20 5.01 1.82 -68.86 -0.13 4.88 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.20 6.32 -34.44 -0.22 -14.42 16 6 H 0.06 1.51 6.04 -52.49 -0.32 1.19 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16 9 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.51 -10.90 4.76 -223.90 -1.07 -11.96 16 14 C 0.04 0.85 5.20 -1.89 -0.01 0.84 16 15 C -0.09 -1.40 2.82 -88.76 -0.25 -1.65 16 16 H 0.08 1.36 7.86 -51.93 -0.41 0.95 16 17 C 0.07 1.00 6.15 -3.83 -0.02 0.98 16 18 N -0.85 -10.91 9.62 -10.37 -0.10 -11.01 16 19 C -0.10 -1.61 3.17 -89.28 -0.28 -1.89 16 20 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 21 C -0.14 -1.86 8.88 37.16 0.33 -1.53 16 22 C 0.04 0.87 4.68 -2.77 -0.01 0.86 16 23 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.73 7.04 -51.93 -0.37 0.37 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.05 1.15 6.06 -51.93 -0.31 0.83 16 30 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.03 0.39 7.99 -51.92 -0.42 -0.03 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.34 4.43 8.39 -39.29 -0.33 4.10 16 34 H 0.33 3.54 9.08 -39.29 -0.36 3.18 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.12 7.63 -51.93 -0.40 0.73 16 39 H 0.06 1.34 6.02 -51.93 -0.31 1.03 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -27.16 296.89 -8.40 -35.56 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.85 Total: 6.59 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.46 Total: -15.48 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.54 Total: -47.05 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.16 -8.40 -35.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723861661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.362 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds