Wall clock time and date at job start Mon Mar 30 2020 03:09:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52995 * 109.47148 * 2 1
4 4 H 1.09003 * 109.47515 * 54.99301 * 3 2 1
5 5 C 1.50697 * 109.47204 * 174.99902 * 3 2 1
6 6 H 1.07999 * 119.99839 * 119.99853 * 5 3 2
7 7 C 1.37873 * 120.00037 * 299.99593 * 5 3 2
8 8 N 1.31516 * 120.00074 * 0.02562 * 7 5 3
9 9 Si 1.86801 * 120.00206 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.46868 * 0.02562 * 9 7 5
11 11 H 1.48504 * 109.47237 * 120.00089 * 9 7 5
12 12 H 1.48497 * 109.47149 * 240.00323 * 9 7 5
13 13 N 1.46907 * 109.46849 * 294.99749 * 3 2 1
14 14 C 1.48539 * 110.99887 * 180.02562 * 13 3 2
15 15 C 1.54937 * 103.22665 * 159.72136 * 14 13 3
16 16 H 1.09001 * 110.72268 * 80.94231 * 15 14 13
17 17 C 1.52995 * 110.72594 * 204.22747 * 15 14 13
18 18 N 1.46898 * 109.47083 * 288.50368 * 17 15 14
19 19 C 1.54596 * 102.92157 * 322.58789 * 15 14 13
20 20 H 1.08999 * 110.30578 * 262.94539 * 19 15 14
21 21 C 1.52997 * 110.31173 * 140.87390 * 19 15 14
22 22 C 1.47899 * 111.00112 * 297.39391 * 13 3 2
23 23 H 1.08999 * 109.46934 * 60.00450 * 1 2 3
24 24 H 1.09004 * 109.46782 * 180.02562 * 1 2 3
25 25 H 1.08997 * 109.47027 * 300.00294 * 1 2 3
26 26 H 1.08997 * 109.47027 * 239.99706 * 2 1 3
27 27 H 1.08999 * 109.46934 * 119.99550 * 2 1 3
28 28 H 0.96994 * 120.00250 * 180.02562 * 8 7 5
29 29 H 1.09002 * 110.66446 * 41.28673 * 14 13 3
30 30 H 1.09003 * 110.80986 * 278.22449 * 14 13 3
31 31 H 1.09009 * 109.46682 * 48.49969 * 17 15 14
32 32 H 1.08995 * 109.47740 * 168.49975 * 17 15 14
33 33 H 1.00899 * 111.00298 * 56.04624 * 18 17 15
34 34 H 1.00902 * 111.00045 * 180.02562 * 18 17 15
35 35 H 1.09002 * 109.47153 * 59.99737 * 21 19 15
36 36 H 1.09001 * 109.46832 * 299.99928 * 21 19 15
37 37 H 1.09004 * 109.47261 * 179.97438 * 21 19 15
38 38 H 1.09004 * 109.91383 * 94.80156 * 22 13 3
39 39 H 1.08997 * 109.91527 * 333.51540 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4443 0.1239
6 1 4.1472 1.8888 -0.6523
7 6 4.1432 0.8785 1.2280
8 7 3.4062 0.3367 2.1729
9 14 6.0050 0.8801 1.3812
10 1 6.5988 1.5452 0.1937
11 1 6.4000 1.6158 2.6092
12 1 6.4961 -0.5190 1.4628
13 7 1.6514 2.0992 -1.2553
14 6 2.1311 3.5045 -1.2915
15 6 2.1159 3.8455 -2.8029
16 1 1.1096 4.1087 -3.1288
17 6 3.0999 4.9752 -3.1130
18 7 2.5776 6.2399 -2.5786
19 6 2.5755 2.5238 -3.4600
20 1 3.6436 2.5596 -3.6749
21 6 1.7847 2.2661 -4.7442
22 6 2.2747 1.4309 -2.4182
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5139 0.8899
26 1 1.8933 -0.5139 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.8292 -0.0610 2.9499
29 1 3.1424 3.5762 -0.8911
30 1 1.4540 4.1591 -0.7427
31 1 4.0625 4.7555 -2.6510
32 1 3.2261 5.0612 -4.1922
33 1 2.3912 6.1652 -1.5898
34 1 3.2099 7.0024 -2.7711
35 1 1.9487 3.0866 -5.4427
36 1 0.7227 2.1959 -4.5090
37 1 2.1197 1.3323 -5.1960
38 1 1.5861 0.6976 -2.8381
39 1 3.2006 0.9429 -2.1137
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000723861661.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:40
Heat of formation + Delta-G solvation = -32.760123 kcal
Electronic energy + Delta-G solvation = -16919.020506 eV
Core-core repulsion = 14473.749376 eV
Total energy + Delta-G solvation = -2445.271130 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.44626 -36.98030 -34.88445 -33.70038 -32.45652 -29.92059 -28.43504 -26.67481
-25.52730 -23.81538 -22.02750 -21.23102 -20.21688 -18.49274 -17.34202 -16.61776
-16.23404 -15.94469 -15.32070 -14.79554 -14.74666 -14.41223 -14.20963 -13.79572
-13.63044 -13.43882 -13.24216 -12.95704 -12.78222 -12.57489 -12.39455 -12.07048
-11.80455 -11.60421 -11.54128 -11.42277 -11.29471 -11.20656 -10.94506 -10.44534
-9.61028 -8.96810 -8.04824 -6.26160 1.33035 1.36226 1.45157 2.37438
3.13370 3.48698 3.65795 3.84497 3.95039 4.18087 4.45844 4.49565
4.57533 4.62720 4.72615 4.74672 4.84354 4.87165 4.93978 4.99318
5.07045 5.14986 5.20924 5.26176 5.35397 5.38329 5.44021 5.46749
5.57771 5.65289 5.78591 6.04417 6.17841 6.22468 6.39058 6.55703
6.61087 6.95830 7.43341 8.90918
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.021715 B = 0.010034 C = 0.008203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.093737 B = 2789.852317 C = 3412.704224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.105 4.105
3 C 0.211 3.789
4 H 0.000 1.000
5 C -0.543 4.543
6 H 0.051 0.949
7 C 0.019 3.981
8 N -0.911 5.911
9 Si 0.945 3.055
10 H -0.272 1.272
11 H -0.282 1.282
12 H -0.281 1.281
13 N -0.515 5.515
14 C 0.044 3.956
15 C -0.073 4.073
16 H 0.084 0.916
17 C 0.078 3.922
18 N -0.852 5.852
19 C -0.094 4.094
20 H 0.066 0.934
21 C -0.129 4.129
22 C 0.046 3.954
23 H 0.055 0.945
24 H 0.046 0.954
25 H 0.032 0.968
26 H 0.029 0.971
27 H 0.062 0.938
28 H 0.261 0.739
29 H 0.029 0.971
30 H 0.061 0.939
31 H 0.015 0.985
32 H 0.083 0.917
33 H 0.341 0.659
34 H 0.349 0.651
35 H 0.067 0.933
36 H 0.054 0.946
37 H 0.058 0.942
38 H 0.064 0.936
39 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.000 5.806 -10.475 12.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.144 4.144
3 C 0.103 3.897
4 H 0.018 0.982
5 C -0.582 4.582
6 H 0.069 0.931
7 C -0.180 4.180
8 N -0.550 5.550
9 Si 0.772 3.228
10 H -0.196 1.196
11 H -0.208 1.208
12 H -0.206 1.206
13 N -0.238 5.238
14 C -0.084 4.084
15 C -0.092 4.092
16 H 0.103 0.897
17 C -0.054 4.054
18 N -0.382 5.382
19 C -0.114 4.114
20 H 0.085 0.915
21 C -0.186 4.186
22 C -0.083 4.083
23 H 0.075 0.925
24 H 0.065 0.935
25 H 0.051 0.949
26 H 0.048 0.952
27 H 0.080 0.920
28 H 0.070 0.930
29 H 0.048 0.952
30 H 0.079 0.921
31 H 0.033 0.967
32 H 0.102 0.898
33 H 0.153 0.847
34 H 0.162 0.838
35 H 0.086 0.914
36 H 0.073 0.927
37 H 0.078 0.922
38 H 0.083 0.917
39 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -2.171 5.560 -10.826 12.362
hybrid contribution 2.848 -0.268 1.487 3.224
sum 0.677 5.292 -9.339 10.756
Atomic orbital electron populations
1.21574 0.96341 0.99818 1.00621 1.21415 0.94489 0.98210 1.00242
1.19155 0.91944 0.91533 0.87062 0.98193 1.21931 0.93852 1.37379
1.05080 0.93101 1.25621 1.01714 0.95058 0.95643 1.70011 1.36154
1.39046 1.09827 0.85705 0.81556 0.77724 0.77836 1.19627 1.20767
1.20648 1.65014 1.53738 1.01929 1.03166 1.23108 0.97954 0.90929
0.96433 1.22090 0.99869 0.93620 0.93653 0.89747 1.21719 0.94401
0.89030 1.00220 1.58757 1.52267 1.05719 1.21483 1.21984 0.99754
0.93931 0.95708 0.91509 1.21728 0.99626 1.01824 0.95427 1.22786
0.97434 0.96823 0.91218 0.92548 0.93479 0.94893 0.95207 0.91991
0.92971 0.95238 0.92053 0.96667 0.89824 0.84653 0.83801 0.91403
0.92726 0.92250 0.91718 0.95098
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.19 9.80 71.98 0.71 -4.48 16
2 C -0.11 -5.11 5.16 30.59 0.16 -4.95 16
3 C 0.21 10.66 1.82 44.17 0.08 10.74 16
4 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
5 C -0.54 -29.28 6.32 25.60 0.16 -29.12 16
6 H 0.05 2.75 6.04 -2.91 -0.02 2.74 16
7 C 0.02 1.06 5.29 84.65 0.45 1.51 16
8 N -0.91 -52.20 11.29 21.45 0.24 -51.96 16
9 Si 0.95 43.49 29.54 68.60 2.03 45.52 16
10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16
13 N -0.52 -22.00 4.76 -862.28 -4.10 -26.10 16
14 C 0.04 1.70 5.20 86.65 0.45 2.15 16
15 C -0.07 -2.22 2.82 -9.59 -0.03 -2.25 16
16 H 0.08 2.58 7.86 -2.39 -0.02 2.56 16
17 C 0.08 2.01 6.15 86.30 0.53 2.54 16
18 N -0.85 -20.02 9.62 -186.72 -1.80 -21.81 16
19 C -0.09 -2.88 3.17 -9.93 -0.03 -2.91 16
20 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16
21 C -0.13 -3.11 8.88 71.98 0.64 -2.47 16
22 C 0.05 1.77 4.68 86.43 0.40 2.17 16
23 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16
24 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16
25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16
26 H 0.03 1.41 7.04 -2.39 -0.02 1.39 16
27 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16
28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16
29 H 0.03 1.28 6.06 -2.39 -0.01 1.27 16
30 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16
31 H 0.02 0.43 7.99 -2.38 -0.02 0.41 16
32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
33 H 0.34 8.36 8.39 -89.70 -0.75 7.61 16
34 H 0.35 6.55 9.08 -89.69 -0.81 5.74 16
35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16
38 H 0.06 2.40 7.63 -2.38 -0.02 2.38 16
39 H 0.03 1.37 6.02 -2.39 -0.01 1.36 16
Total: -1.00 -58.61 296.89 -0.65 -59.27
By element:
Atomic # 1 Polarization: 22.69 SS G_CDS: -0.54 Total: 22.15 kcal
Atomic # 6 Polarization: -30.58 SS G_CDS: 3.52 Total: -27.06 kcal
Atomic # 7 Polarization: -94.22 SS G_CDS: -5.66 Total: -99.87 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal
Total: -58.61 -0.65 -59.27 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723861661.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.506 kcal
(2) G-P(sol) polarization free energy of solvation -58.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.266 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds