Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 H 1.09003 * 109.47515 * 54.99301 * 3 2 1 5 5 C 1.50697 * 109.47204 * 174.99902 * 3 2 1 6 6 H 1.07999 * 119.99839 * 119.99853 * 5 3 2 7 7 C 1.37873 * 120.00037 * 299.99593 * 5 3 2 8 8 N 1.31516 * 120.00074 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00206 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46868 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47237 * 120.00089 * 9 7 5 12 12 H 1.48497 * 109.47149 * 240.00323 * 9 7 5 13 13 N 1.46907 * 109.46849 * 294.99749 * 3 2 1 14 14 C 1.48539 * 110.99887 * 180.02562 * 13 3 2 15 15 C 1.54937 * 103.22665 * 159.72136 * 14 13 3 16 16 H 1.09001 * 110.72268 * 80.94231 * 15 14 13 17 17 C 1.52995 * 110.72594 * 204.22747 * 15 14 13 18 18 N 1.46898 * 109.47083 * 288.50368 * 17 15 14 19 19 C 1.54596 * 102.92157 * 322.58789 * 15 14 13 20 20 H 1.08999 * 110.30578 * 262.94539 * 19 15 14 21 21 C 1.52997 * 110.31173 * 140.87390 * 19 15 14 22 22 C 1.47899 * 111.00112 * 297.39391 * 13 3 2 23 23 H 1.08999 * 109.46934 * 60.00450 * 1 2 3 24 24 H 1.09004 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47027 * 300.00294 * 1 2 3 26 26 H 1.08997 * 109.47027 * 239.99706 * 2 1 3 27 27 H 1.08999 * 109.46934 * 119.99550 * 2 1 3 28 28 H 0.96994 * 120.00250 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.66446 * 41.28673 * 14 13 3 30 30 H 1.09003 * 110.80986 * 278.22449 * 14 13 3 31 31 H 1.09009 * 109.46682 * 48.49969 * 17 15 14 32 32 H 1.08995 * 109.47740 * 168.49975 * 17 15 14 33 33 H 1.00899 * 111.00298 * 56.04624 * 18 17 15 34 34 H 1.00902 * 111.00045 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.47153 * 59.99737 * 21 19 15 36 36 H 1.09001 * 109.46832 * 299.99928 * 21 19 15 37 37 H 1.09004 * 109.47261 * 179.97438 * 21 19 15 38 38 H 1.09004 * 109.91383 * 94.80156 * 22 13 3 39 39 H 1.08997 * 109.91527 * 333.51540 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5452 0.1937 11 1 6.4000 1.6158 2.6092 12 1 6.4961 -0.5190 1.4628 13 7 1.6514 2.0992 -1.2553 14 6 2.1311 3.5045 -1.2915 15 6 2.1159 3.8455 -2.8029 16 1 1.1096 4.1087 -3.1288 17 6 3.0999 4.9752 -3.1130 18 7 2.5776 6.2399 -2.5786 19 6 2.5755 2.5238 -3.4600 20 1 3.6436 2.5596 -3.6749 21 6 1.7847 2.2661 -4.7442 22 6 2.2747 1.4309 -2.4182 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8292 -0.0610 2.9499 29 1 3.1424 3.5762 -0.8911 30 1 1.4540 4.1591 -0.7427 31 1 4.0625 4.7555 -2.6510 32 1 3.2261 5.0612 -4.1922 33 1 2.3912 6.1652 -1.5898 34 1 3.2099 7.0024 -2.7711 35 1 1.9487 3.0866 -5.4427 36 1 0.7227 2.1959 -4.5090 37 1 2.1197 1.3323 -5.1960 38 1 1.5861 0.6976 -2.8381 39 1 3.2006 0.9429 -2.1137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723861661.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -32.760123 kcal Electronic energy + Delta-G solvation = -16919.020506 eV Core-core repulsion = 14473.749376 eV Total energy + Delta-G solvation = -2445.271130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44626 -36.98030 -34.88445 -33.70038 -32.45652 -29.92059 -28.43504 -26.67481 -25.52730 -23.81538 -22.02750 -21.23102 -20.21688 -18.49274 -17.34202 -16.61776 -16.23404 -15.94469 -15.32070 -14.79554 -14.74666 -14.41223 -14.20963 -13.79572 -13.63044 -13.43882 -13.24216 -12.95704 -12.78222 -12.57489 -12.39455 -12.07048 -11.80455 -11.60421 -11.54128 -11.42277 -11.29471 -11.20656 -10.94506 -10.44534 -9.61028 -8.96810 -8.04824 -6.26160 1.33035 1.36226 1.45157 2.37438 3.13370 3.48698 3.65795 3.84497 3.95039 4.18087 4.45844 4.49565 4.57533 4.62720 4.72615 4.74672 4.84354 4.87165 4.93978 4.99318 5.07045 5.14986 5.20924 5.26176 5.35397 5.38329 5.44021 5.46749 5.57771 5.65289 5.78591 6.04417 6.17841 6.22468 6.39058 6.55703 6.61087 6.95830 7.43341 8.90918 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.010034 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.093737 B = 2789.852317 C = 3412.704224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.211 3.789 4 H 0.000 1.000 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.515 5.515 14 C 0.044 3.956 15 C -0.073 4.073 16 H 0.084 0.916 17 C 0.078 3.922 18 N -0.852 5.852 19 C -0.094 4.094 20 H 0.066 0.934 21 C -0.129 4.129 22 C 0.046 3.954 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.015 0.985 32 H 0.083 0.917 33 H 0.341 0.659 34 H 0.349 0.651 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 5.806 -10.475 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.103 3.897 4 H 0.018 0.982 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.238 5.238 14 C -0.084 4.084 15 C -0.092 4.092 16 H 0.103 0.897 17 C -0.054 4.054 18 N -0.382 5.382 19 C -0.114 4.114 20 H 0.085 0.915 21 C -0.186 4.186 22 C -0.083 4.083 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.171 5.560 -10.826 12.362 hybrid contribution 2.848 -0.268 1.487 3.224 sum 0.677 5.292 -9.339 10.756 Atomic orbital electron populations 1.21574 0.96341 0.99818 1.00621 1.21415 0.94489 0.98210 1.00242 1.19155 0.91944 0.91533 0.87062 0.98193 1.21931 0.93852 1.37379 1.05080 0.93101 1.25621 1.01714 0.95058 0.95643 1.70011 1.36154 1.39046 1.09827 0.85705 0.81556 0.77724 0.77836 1.19627 1.20767 1.20648 1.65014 1.53738 1.01929 1.03166 1.23108 0.97954 0.90929 0.96433 1.22090 0.99869 0.93620 0.93653 0.89747 1.21719 0.94401 0.89030 1.00220 1.58757 1.52267 1.05719 1.21483 1.21984 0.99754 0.93931 0.95708 0.91509 1.21728 0.99626 1.01824 0.95427 1.22786 0.97434 0.96823 0.91218 0.92548 0.93479 0.94893 0.95207 0.91991 0.92971 0.95238 0.92053 0.96667 0.89824 0.84653 0.83801 0.91403 0.92726 0.92250 0.91718 0.95098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.80 71.98 0.71 -4.48 16 2 C -0.11 -5.11 5.16 30.59 0.16 -4.95 16 3 C 0.21 10.66 1.82 44.17 0.08 10.74 16 4 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 5 C -0.54 -29.28 6.32 25.60 0.16 -29.12 16 6 H 0.05 2.75 6.04 -2.91 -0.02 2.74 16 7 C 0.02 1.06 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.20 11.29 21.45 0.24 -51.96 16 9 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.52 -22.00 4.76 -862.28 -4.10 -26.10 16 14 C 0.04 1.70 5.20 86.65 0.45 2.15 16 15 C -0.07 -2.22 2.82 -9.59 -0.03 -2.25 16 16 H 0.08 2.58 7.86 -2.39 -0.02 2.56 16 17 C 0.08 2.01 6.15 86.30 0.53 2.54 16 18 N -0.85 -20.02 9.62 -186.72 -1.80 -21.81 16 19 C -0.09 -2.88 3.17 -9.93 -0.03 -2.91 16 20 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 21 C -0.13 -3.11 8.88 71.98 0.64 -2.47 16 22 C 0.05 1.77 4.68 86.43 0.40 2.17 16 23 H 0.06 2.20 7.75 -2.39 -0.02 2.19 16 24 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.03 1.41 7.04 -2.39 -0.02 1.39 16 27 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.03 1.28 6.06 -2.39 -0.01 1.27 16 30 H 0.06 2.34 8.10 -2.39 -0.02 2.32 16 31 H 0.02 0.43 7.99 -2.38 -0.02 0.41 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.34 8.36 8.39 -89.70 -0.75 7.61 16 34 H 0.35 6.55 9.08 -89.69 -0.81 5.74 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.06 2.40 7.63 -2.38 -0.02 2.38 16 39 H 0.03 1.37 6.02 -2.39 -0.01 1.36 16 Total: -1.00 -58.61 296.89 -0.65 -59.27 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.54 Total: 22.15 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.52 Total: -27.06 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -5.66 Total: -99.87 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -58.61 -0.65 -59.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723861661.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.506 kcal (2) G-P(sol) polarization free energy of solvation -58.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds