Wall clock time and date at job start Mon Mar 30 2020 03:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 H 1.08993 * 109.47352 * 306.38431 * 3 2 1 5 5 C 1.50707 * 109.47016 * 186.38020 * 3 2 1 6 6 H 1.07997 * 119.99664 * 239.99586 * 5 3 2 7 7 C 1.37872 * 119.99714 * 60.00504 * 5 3 2 8 8 N 1.31515 * 120.00476 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99794 * 179.72300 * 7 5 3 10 10 H 1.48499 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47279 * 119.99775 * 9 7 5 12 12 H 1.48500 * 109.46998 * 239.99576 * 9 7 5 13 13 N 1.46908 * 109.47174 * 66.38526 * 3 2 1 14 14 C 1.47798 * 111.00055 * 46.67880 * 13 3 2 15 15 C 1.45859 * 112.91676 * 153.87016 * 14 13 3 16 16 C 1.54502 * 111.59034 * 61.32955 * 15 14 13 17 17 C 1.50459 * 108.85258 * 282.80567 * 16 15 14 18 18 H 1.09000 * 108.77088 * 331.35456 * 17 16 15 19 19 N 1.46908 * 108.77310 * 213.07186 * 17 16 15 20 20 C 1.54290 * 113.03336 * 92.15403 * 17 16 15 21 21 C 1.44274 * 110.99273 * 284.70238 * 13 3 2 22 22 H 1.08996 * 109.47264 * 287.21229 * 1 2 3 23 23 H 1.09006 * 109.47118 * 47.21708 * 1 2 3 24 24 H 1.08998 * 109.46830 * 167.20977 * 1 2 3 25 25 H 1.08996 * 109.47848 * 239.99945 * 2 1 3 26 26 H 1.09002 * 109.47129 * 120.00024 * 2 1 3 27 27 H 0.96993 * 120.00360 * 180.02562 * 8 7 5 28 28 H 1.09000 * 108.79827 * 274.76135 * 14 13 3 29 29 H 1.09002 * 108.79606 * 33.09815 * 14 13 3 30 30 H 1.09006 * 109.06009 * 181.87437 * 15 14 13 31 31 H 1.09000 * 109.05487 * 300.78245 * 15 14 13 32 32 H 1.08998 * 109.57716 * 42.61857 * 16 15 14 33 33 H 1.09004 * 109.57457 * 162.99912 * 16 15 14 34 34 H 1.00901 * 110.99784 * 59.99748 * 19 17 16 35 35 H 1.00895 * 111.00288 * 183.95446 * 19 17 16 36 36 H 1.09003 * 108.91610 * 79.02750 * 20 17 16 37 37 H 1.09002 * 108.92076 * 197.67094 * 20 17 16 38 38 H 1.08995 * 108.98403 * 339.94822 * 21 13 3 39 39 H 1.08995 * 108.98231 * 98.66863 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5863 1.9883 -0.8273 5 6 3.5387 1.4455 -0.1579 6 1 4.1614 1.8839 0.6078 7 6 4.1147 0.8886 -1.2799 8 7 3.3564 0.3544 -2.2122 9 14 5.9720 0.8991 -1.4793 10 1 6.5924 1.5599 -0.3031 11 1 6.4669 -0.4974 -1.5813 12 1 6.3332 1.6435 -2.7125 13 7 1.6801 2.0892 1.2691 14 6 2.0008 1.2164 2.4179 15 6 2.2472 1.9626 3.6467 16 6 1.0051 2.7739 4.0779 17 6 0.9039 4.0029 3.2159 18 1 1.9054 4.2901 2.8955 19 7 0.3328 5.0953 4.0152 20 6 0.0262 3.7920 1.9646 21 6 0.2775 2.4259 1.2981 22 1 -0.3633 0.3041 0.9816 23 1 -0.3634 0.6980 -0.7543 24 1 -0.3633 -1.0022 -0.2275 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7616 -0.0377 -3.0014 28 1 1.1679 0.5330 2.5831 29 1 2.8903 0.6335 2.1786 30 1 2.5092 1.2637 4.4411 31 1 3.0810 2.6462 3.4867 32 1 0.1097 2.1652 3.9526 33 1 1.1057 3.0680 5.1227 34 1 0.9135 5.3002 4.8146 35 1 0.1899 5.9196 3.4512 36 1 -1.0228 3.8566 2.2538 37 1 0.2429 4.5806 1.2439 38 1 -0.1014 2.4550 0.2765 39 1 -0.2604 1.6569 1.8523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888106396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:22 Heat of formation + Delta-G solvation = 1.144708 kcal Electronic energy + Delta-G solvation = -17136.805441 eV Core-core repulsion = 14693.004534 eV Total energy + Delta-G solvation = -2443.800906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12726 -35.97116 -33.08692 -32.25643 -30.80425 -29.38382 -27.04824 -25.23675 -23.58241 -22.46384 -20.71988 -19.23266 -18.61069 -16.37904 -15.74618 -15.37102 -14.67199 -14.59884 -14.31916 -13.82444 -13.41243 -12.93524 -12.45852 -12.12835 -12.08659 -11.66180 -11.40015 -11.21451 -10.96470 -10.74306 -10.68118 -10.37495 -10.30069 -10.22259 -10.07052 -9.80141 -9.62386 -9.49663 -8.85340 -8.44163 -8.32880 -7.04719 -5.99166 -4.02411 3.30125 3.38365 3.42907 4.42788 4.70919 4.94307 5.25078 5.31063 5.41755 5.62456 5.71056 5.79866 5.95317 6.01155 6.14086 6.17386 6.26795 6.30098 6.38526 6.46344 6.48217 6.57787 6.63650 6.71011 6.83721 6.87373 6.90640 7.04705 7.28837 7.40550 7.53915 7.62526 7.75490 7.90389 8.21877 8.45448 8.67939 9.05380 9.62575 11.07264 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.008634 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.985960 B = 3242.330920 C = 3624.446529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C 0.218 3.782 4 H 0.037 0.963 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.520 5.520 14 C 0.059 3.941 15 C -0.112 4.112 16 C -0.104 4.104 17 C 0.102 3.898 18 H 0.042 0.958 19 N -0.856 5.856 20 C -0.104 4.104 21 C 0.056 3.944 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.097 0.903 26 H 0.037 0.963 27 H 0.259 0.741 28 H 0.021 0.979 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.334 0.666 35 H 0.334 0.666 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.719 3.799 8.964 10.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.193 4.193 3 C 0.112 3.888 4 H 0.055 0.945 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.244 5.244 14 C -0.068 4.068 15 C -0.151 4.151 16 C -0.142 4.142 17 C -0.008 4.008 18 H 0.060 0.940 19 N -0.385 5.385 20 C -0.143 4.143 21 C -0.074 4.074 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.116 0.884 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.031 3.666 8.912 10.871 hybrid contribution 1.356 -0.288 -0.585 1.505 sum -3.675 3.378 8.327 9.708 Atomic orbital electron populations 1.22186 0.99540 0.99557 1.00014 1.22282 0.91769 1.02314 1.02954 1.19469 0.95661 0.88736 0.84969 0.94504 1.21180 0.91185 1.36353 1.04565 0.92009 1.24931 0.97999 0.95576 0.95903 1.69884 1.34502 1.39623 1.09417 0.86508 0.85806 0.77493 0.77991 1.19807 1.21230 1.21163 1.61829 1.15190 1.43318 1.04014 1.20843 1.00798 0.94233 0.90958 1.20648 0.97808 0.99382 0.97255 1.21336 0.98465 0.96342 0.98063 1.21045 0.96581 0.90882 0.92317 0.94045 1.59004 1.55544 1.11348 1.12631 1.22029 0.98377 0.98480 0.95444 1.22094 0.91131 0.94841 0.99335 0.93852 0.93670 0.95000 0.88442 0.94384 0.93120 0.96084 0.90512 0.92721 0.91733 0.92184 0.92593 0.85449 0.85400 0.92375 0.92875 0.92147 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.51 37.15 0.32 -2.77 16 2 C -0.15 -3.57 4.80 -26.73 -0.13 -3.70 16 3 C 0.22 5.31 1.85 -68.86 -0.13 5.19 16 4 H 0.04 1.00 7.52 -51.93 -0.39 0.61 16 5 C -0.49 -13.31 7.82 -34.44 -0.27 -13.58 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.89 -25.19 11.29 55.43 0.63 -24.56 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.52 -10.79 4.13 -232.94 -0.96 -11.75 16 14 C 0.06 1.13 3.38 -6.71 -0.02 1.11 16 15 C -0.11 -1.81 5.53 -29.32 -0.16 -1.97 16 16 C -0.10 -1.53 5.26 -27.21 -0.14 -1.67 16 17 C 0.10 1.53 2.85 -68.30 -0.19 1.34 16 18 H 0.04 0.70 7.38 -51.93 -0.38 0.32 16 19 N -0.86 -10.72 9.15 -5.17 -0.05 -10.77 16 20 C -0.10 -1.67 5.63 -25.50 -0.14 -1.81 16 21 C 0.06 1.02 3.50 -4.67 -0.02 1.01 16 22 H 0.04 0.79 4.71 -51.93 -0.24 0.55 16 23 H 0.04 0.90 7.29 -51.93 -0.38 0.52 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 2.57 5.92 -51.93 -0.31 2.27 16 26 H 0.04 0.87 6.09 -51.93 -0.32 0.55 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.02 0.39 6.29 -51.93 -0.33 0.07 16 29 H 0.08 1.62 6.45 -51.93 -0.33 1.29 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.10 7.59 -51.93 -0.39 0.70 16 32 H 0.06 0.92 7.15 -51.93 -0.37 0.55 16 33 H 0.06 0.74 7.80 -51.93 -0.41 0.34 16 34 H 0.33 3.65 8.84 -39.29 -0.35 3.30 16 35 H 0.33 3.80 8.93 -39.29 -0.35 3.45 16 36 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.16 6.00 -51.93 -0.31 0.85 16 39 H 0.03 0.61 4.58 -51.93 -0.24 0.37 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -27.29 281.06 -8.49 -35.78 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.34 Total: 6.25 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -0.99 Total: -15.42 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.38 Total: -47.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.29 -8.49 -35.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.925 kcal (2) G-P(sol) polarization free energy of solvation -27.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds