Wall clock time and date at job start Mon Mar 30 2020 03:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 H 1.08993 * 109.47352 * 306.38431 * 3 2 1 5 5 C 1.50707 * 109.47016 * 186.38020 * 3 2 1 6 6 H 1.07997 * 119.99664 * 239.99586 * 5 3 2 7 7 C 1.37872 * 119.99714 * 60.00504 * 5 3 2 8 8 N 1.31515 * 120.00476 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99794 * 179.72300 * 7 5 3 10 10 H 1.48499 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47279 * 119.99775 * 9 7 5 12 12 H 1.48500 * 109.46998 * 239.99576 * 9 7 5 13 13 N 1.46908 * 109.47174 * 66.38526 * 3 2 1 14 14 C 1.47798 * 111.00055 * 46.67880 * 13 3 2 15 15 C 1.45859 * 112.91676 * 153.87016 * 14 13 3 16 16 C 1.54502 * 111.59034 * 61.32955 * 15 14 13 17 17 C 1.50459 * 108.85258 * 282.80567 * 16 15 14 18 18 H 1.09000 * 108.77088 * 331.35456 * 17 16 15 19 19 N 1.46908 * 108.77310 * 213.07186 * 17 16 15 20 20 C 1.54290 * 113.03336 * 92.15403 * 17 16 15 21 21 C 1.44274 * 110.99273 * 284.70238 * 13 3 2 22 22 H 1.08996 * 109.47264 * 287.21229 * 1 2 3 23 23 H 1.09006 * 109.47118 * 47.21708 * 1 2 3 24 24 H 1.08998 * 109.46830 * 167.20977 * 1 2 3 25 25 H 1.08996 * 109.47848 * 239.99945 * 2 1 3 26 26 H 1.09002 * 109.47129 * 120.00024 * 2 1 3 27 27 H 0.96993 * 120.00360 * 180.02562 * 8 7 5 28 28 H 1.09000 * 108.79827 * 274.76135 * 14 13 3 29 29 H 1.09002 * 108.79606 * 33.09815 * 14 13 3 30 30 H 1.09006 * 109.06009 * 181.87437 * 15 14 13 31 31 H 1.09000 * 109.05487 * 300.78245 * 15 14 13 32 32 H 1.08998 * 109.57716 * 42.61857 * 16 15 14 33 33 H 1.09004 * 109.57457 * 162.99912 * 16 15 14 34 34 H 1.00901 * 110.99784 * 59.99748 * 19 17 16 35 35 H 1.00895 * 111.00288 * 183.95446 * 19 17 16 36 36 H 1.09003 * 108.91610 * 79.02750 * 20 17 16 37 37 H 1.09002 * 108.92076 * 197.67094 * 20 17 16 38 38 H 1.08995 * 108.98403 * 339.94822 * 21 13 3 39 39 H 1.08995 * 108.98231 * 98.66863 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5863 1.9883 -0.8273 5 6 3.5387 1.4455 -0.1579 6 1 4.1614 1.8839 0.6078 7 6 4.1147 0.8886 -1.2799 8 7 3.3564 0.3544 -2.2122 9 14 5.9720 0.8991 -1.4793 10 1 6.5924 1.5599 -0.3031 11 1 6.4669 -0.4974 -1.5813 12 1 6.3332 1.6435 -2.7125 13 7 1.6801 2.0892 1.2691 14 6 2.0008 1.2164 2.4179 15 6 2.2472 1.9626 3.6467 16 6 1.0051 2.7739 4.0779 17 6 0.9039 4.0029 3.2159 18 1 1.9054 4.2901 2.8955 19 7 0.3328 5.0953 4.0152 20 6 0.0262 3.7920 1.9646 21 6 0.2775 2.4259 1.2981 22 1 -0.3633 0.3041 0.9816 23 1 -0.3634 0.6980 -0.7543 24 1 -0.3633 -1.0022 -0.2275 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7616 -0.0377 -3.0014 28 1 1.1679 0.5330 2.5831 29 1 2.8903 0.6335 2.1786 30 1 2.5092 1.2637 4.4411 31 1 3.0810 2.6462 3.4867 32 1 0.1097 2.1652 3.9526 33 1 1.1057 3.0680 5.1227 34 1 0.9135 5.3002 4.8146 35 1 0.1899 5.9196 3.4512 36 1 -1.0228 3.8566 2.2538 37 1 0.2429 4.5806 1.2439 38 1 -0.1014 2.4550 0.2765 39 1 -0.2604 1.6569 1.8523 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888106396.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:22 Heat of formation + Delta-G solvation = -17.632548 kcal Electronic energy + Delta-G solvation = -17137.619683 eV Core-core repulsion = 14693.004534 eV Total energy + Delta-G solvation = -2444.615149 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65641 -37.42982 -34.79395 -33.84174 -32.44559 -30.84089 -28.79359 -26.74393 -25.23631 -24.06446 -22.32455 -20.76892 -20.08333 -18.34873 -17.26353 -16.79107 -16.24835 -16.11003 -15.83269 -15.20441 -14.96255 -14.70306 -13.87825 -13.68089 -13.60425 -13.27413 -13.12396 -12.83771 -12.70744 -12.49799 -12.28404 -12.10083 -11.95711 -11.72332 -11.46381 -11.35144 -11.28166 -11.12622 -10.80894 -10.40776 -9.51269 -8.70948 -8.08356 -6.18371 1.39717 1.42215 1.53412 2.43455 3.19331 3.39243 3.60911 3.98697 4.07821 4.27335 4.32100 4.44125 4.48811 4.55705 4.64747 4.72278 4.79723 4.82535 4.87253 5.00982 5.08382 5.17078 5.23651 5.26826 5.35426 5.37196 5.39819 5.46047 5.58713 5.65452 5.78260 5.87510 6.31012 6.35136 6.58870 6.70643 6.88531 6.97420 7.50792 8.96877 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.030594 B = 0.008634 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.985960 B = 3242.330920 C = 3624.446529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.508 4.508 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.527 5.527 14 C 0.065 3.935 15 C -0.109 4.109 16 C -0.097 4.097 17 C 0.107 3.893 18 H 0.018 0.982 19 N -0.850 5.850 20 C -0.099 4.099 21 C 0.057 3.943 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.346 0.654 35 H 0.342 0.658 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 4.180 10.718 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.118 3.882 4 H 0.019 0.981 5 C -0.547 4.547 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.251 5.251 14 C -0.062 4.062 15 C -0.147 4.147 16 C -0.135 4.135 17 C -0.004 4.004 18 H 0.036 0.964 19 N -0.381 5.381 20 C -0.138 4.138 21 C -0.073 4.073 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.490 4.062 10.688 12.683 hybrid contribution 1.472 -0.385 -1.120 1.889 sum -4.018 3.677 9.568 11.009 Atomic orbital electron populations 1.22050 0.96742 1.00431 1.00922 1.22092 0.94240 1.01028 1.01209 1.19184 0.94177 0.89151 0.85739 0.98102 1.21428 0.92650 1.36212 1.04408 0.93049 1.25646 1.02066 0.95338 0.95697 1.70013 1.36062 1.40177 1.09755 0.85562 0.80948 0.77575 0.77855 1.19424 1.20684 1.20917 1.61794 1.17007 1.43243 1.03027 1.20841 0.99675 0.94307 0.91392 1.20595 0.98261 0.99554 0.96337 1.21273 0.97386 0.95716 0.99084 1.20885 0.95168 0.92046 0.92264 0.96366 1.58941 1.55252 1.11195 1.12694 1.21951 0.99523 0.96572 0.95721 1.22109 0.89535 0.96565 0.99061 0.92029 0.94248 0.93492 0.91770 0.94375 0.93123 0.95451 0.93280 0.90432 0.92938 0.92245 0.90471 0.84107 0.84525 0.90780 0.93498 0.93554 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.15 -6.90 4.80 30.59 0.15 -6.75 16 3 C 0.22 11.26 1.85 44.17 0.08 11.34 16 4 H 0.00 0.06 7.52 -2.39 -0.02 0.04 16 5 C -0.51 -28.08 7.82 25.60 0.20 -27.88 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.59 5.29 84.65 0.45 1.04 16 8 N -0.92 -53.04 11.29 21.45 0.24 -52.80 16 9 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.53 -21.95 4.13 -890.88 -3.68 -25.63 16 14 C 0.07 2.44 3.38 83.94 0.28 2.72 16 15 C -0.11 -3.31 5.53 28.92 0.16 -3.15 16 16 C -0.10 -2.56 5.26 30.28 0.16 -2.40 16 17 C 0.11 3.00 2.85 44.53 0.13 3.13 16 18 H 0.02 0.60 7.38 -2.39 -0.02 0.58 16 19 N -0.85 -18.83 9.15 -170.27 -1.56 -20.39 16 20 C -0.10 -3.00 5.63 31.39 0.18 -2.82 16 21 C 0.06 2.03 3.50 87.16 0.31 2.33 16 22 H 0.06 2.15 4.71 -2.39 -0.01 2.14 16 23 H 0.04 1.56 7.29 -2.38 -0.02 1.54 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 3.48 5.92 -2.39 -0.01 3.47 16 26 H 0.04 1.76 6.09 -2.39 -0.01 1.74 16 27 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.03 0.98 6.29 -2.39 -0.02 0.96 16 29 H 0.05 2.09 6.45 -2.39 -0.02 2.07 16 30 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.05 1.73 7.59 -2.39 -0.02 1.71 16 32 H 0.06 1.62 7.15 -2.39 -0.02 1.60 16 33 H 0.08 1.75 7.80 -2.38 -0.02 1.73 16 34 H 0.35 6.46 8.84 -89.69 -0.79 5.67 16 35 H 0.34 6.88 8.93 -89.70 -0.80 6.08 16 36 H 0.07 2.03 8.13 -2.39 -0.02 2.01 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.78 6.00 -2.39 -0.01 1.76 16 39 H 0.04 1.48 4.58 -2.39 -0.01 1.46 16 Total: -1.00 -58.99 281.06 -0.81 -59.81 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -0.55 Total: 20.29 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 2.70 Total: -27.46 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.99 Total: -98.82 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -58.99 -0.81 -59.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888106396.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.174 kcal (2) G-P(sol) polarization free energy of solvation -58.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds