Wall clock time and date at job start Mon Mar 30 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50304 * 2 1 4 4 C 1.53041 * 109.49796 * 239.88579 * 2 1 3 5 5 N 1.46850 * 109.51997 * 180.87867 * 4 2 1 6 6 C 1.46904 * 110.99732 * 185.83690 * 5 4 2 7 7 C 1.46849 * 111.20002 * 61.74163 * 5 4 2 8 8 H 1.09001 * 109.45639 * 58.26124 * 7 5 4 9 9 C 1.53000 * 109.46198 * 178.23959 * 7 5 4 10 10 C 1.53039 * 109.52173 * 298.25918 * 7 5 4 11 11 C 1.53116 * 109.50499 * 120.08340 * 2 1 3 12 12 H 1.08996 * 109.52006 * 297.55819 * 11 2 1 13 13 N 1.46901 * 109.52554 * 57.68967 * 11 2 1 14 14 C 1.46895 * 110.99816 * 204.99906 * 13 11 2 15 15 C 1.50706 * 109.47182 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 H 1.09001 * 109.46617 * 299.91688 * 1 2 3 24 24 H 1.09001 * 109.47613 * 59.91600 * 1 2 3 25 25 H 1.09004 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46249 * 300.89183 * 4 2 1 27 27 H 1.08995 * 109.46745 * 60.86222 * 4 2 1 28 28 H 1.09007 * 109.47010 * 63.95666 * 6 5 4 29 29 H 1.09004 * 109.46743 * 183.94960 * 6 5 4 30 30 H 1.08995 * 109.47604 * 303.95476 * 6 5 4 31 31 H 1.09002 * 109.46895 * 59.99908 * 9 7 5 32 32 H 1.09000 * 109.47009 * 179.97438 * 9 7 5 33 33 H 1.09001 * 109.46814 * 300.00014 * 9 7 5 34 34 H 1.09001 * 109.49860 * 299.23699 * 10 7 5 35 35 H 1.08996 * 109.50013 * 179.12018 * 10 7 5 36 36 H 1.00902 * 110.99849 * 328.95284 * 13 11 2 37 37 H 1.09001 * 109.47613 * 60.00104 * 14 13 11 38 38 H 1.08998 * 109.47678 * 300.00000 * 14 13 11 39 39 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0408 -0.7238 -1.2479 5 7 3.5092 -0.7425 -1.2378 6 6 4.0370 -1.3067 -2.4873 7 6 4.0229 -1.4730 -0.0721 8 1 3.6372 -2.4925 -0.0837 9 6 5.5517 -1.5057 -0.1242 10 6 3.5712 -0.7716 1.2108 11 6 2.0412 -0.7235 1.2489 12 1 1.7148 -0.1870 2.1398 13 7 1.5076 -2.0918 1.2766 14 6 1.4551 -2.6086 2.6506 15 6 0.9032 -4.0109 2.6392 16 1 0.6202 -4.4722 1.7045 17 6 0.7653 -4.7073 3.8211 18 7 1.1159 -4.1479 4.9586 19 14 0.0819 -6.4457 3.8069 20 1 1.1968 -7.4147 3.6547 21 1 -0.6311 -6.7077 5.0828 22 1 -0.8635 -6.5965 2.6716 23 1 -0.3632 0.5126 0.8908 24 1 -0.3634 0.5151 -0.8892 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6646 -1.7468 -1.2539 27 1 1.6904 -0.2030 -2.1389 28 1 3.7599 -0.6630 -3.3222 29 1 5.1232 -1.3737 -2.4252 30 1 3.6198 -2.3017 -2.6415 31 1 5.9374 -0.4863 -0.1132 32 1 5.9332 -2.0475 0.7412 33 1 5.8735 -2.0061 -1.0375 34 1 3.9678 0.2435 1.2295 35 1 3.9396 -1.3229 2.0759 36 1 0.5993 -2.1347 0.8392 37 1 0.8107 -1.9699 3.2548 38 1 2.4592 -2.6165 3.0746 39 1 1.0193 -4.6379 5.7902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036908379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:49 Heat of formation + Delta-G solvation = -6.090051 kcal Electronic energy + Delta-G solvation = -16733.688708 eV Core-core repulsion = 14289.574079 eV Total energy + Delta-G solvation = -2444.114629 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37469 -35.58437 -33.35192 -32.40501 -30.90213 -28.42599 -26.75543 -25.58573 -24.21327 -22.49491 -21.44622 -20.24162 -18.34584 -16.46133 -15.49420 -15.06161 -14.92945 -14.60717 -14.27139 -14.13952 -13.34292 -12.75573 -12.61658 -12.42066 -11.98103 -11.93745 -11.66567 -11.62219 -11.41473 -11.27480 -11.10544 -10.85991 -10.78045 -10.46133 -10.37698 -10.02034 -9.85614 -9.57559 -9.09705 -8.47077 -7.98762 -7.18252 -6.02226 -4.03940 3.31659 3.37488 3.41010 4.22159 4.43502 5.02059 5.15790 5.25320 5.31178 5.33864 5.44447 5.57737 5.59650 5.68869 5.81470 5.84842 5.90170 5.98055 6.00751 6.06003 6.16510 6.22034 6.29793 6.35266 6.44807 6.53517 6.55147 6.69093 6.81833 7.31969 7.42930 7.47102 7.49743 7.80858 8.16761 8.45942 8.66473 9.05883 9.60984 11.08824 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.007195 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.209440 B = 3890.707688 C = 4174.438489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.073 0.927 4 C 0.069 3.931 5 N -0.541 5.541 6 C 0.021 3.979 7 C 0.088 3.912 8 H 0.062 0.938 9 C -0.148 4.148 10 C -0.094 4.094 11 C 0.086 3.914 12 H 0.035 0.965 13 N -0.685 5.685 14 C 0.196 3.804 15 C -0.513 4.513 16 H 0.060 0.940 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.328 0.672 37 H -0.016 1.016 38 H 0.027 0.973 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 7.622 -11.366 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.059 4.059 5 N -0.265 5.265 6 C -0.127 4.127 7 C -0.020 4.020 8 H 0.080 0.920 9 C -0.205 4.205 10 C -0.132 4.132 11 C -0.025 4.025 12 H 0.053 0.947 13 N -0.318 5.318 14 C 0.069 3.931 15 C -0.551 4.551 16 H 0.078 0.922 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.002 0.998 38 H 0.045 0.955 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.517 7.767 -11.265 14.409 hybrid contribution -1.378 -1.306 0.499 1.963 sum 3.138 6.461 -10.766 12.942 Atomic orbital electron populations 1.21850 0.95419 1.02217 1.01372 1.21293 0.94850 0.99533 0.95078 0.90868 1.21983 0.87186 0.99649 0.97059 1.61991 1.08107 1.54212 1.02225 1.22401 1.00644 0.97516 0.92161 1.21500 0.93654 0.97001 0.89853 0.91999 1.21958 0.95639 1.01647 1.01294 1.21543 0.95322 0.99570 0.96781 1.21508 0.94948 0.90731 0.95277 0.94684 1.60762 1.30245 1.18032 1.22772 1.19554 0.96443 0.94221 0.82863 1.21190 1.41797 0.99151 0.92992 0.92189 1.24978 0.95764 0.98315 0.95479 1.69964 1.48385 1.37484 0.97884 0.86517 0.79061 0.84650 0.77276 1.20674 1.21301 1.19920 0.92633 0.92861 0.91989 0.93655 0.92064 0.92203 0.91214 0.95897 0.92516 0.92279 0.92974 0.92396 0.91408 0.85267 0.99824 0.95479 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.92 37.16 0.33 -1.73 16 2 C -0.09 -1.32 2.67 -90.54 -0.24 -1.56 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.07 1.01 4.60 -3.83 -0.02 0.99 16 5 N -0.54 -7.92 4.75 -234.91 -1.12 -9.04 16 6 C 0.02 0.26 9.30 60.07 0.56 0.82 16 7 C 0.09 1.41 2.30 -67.72 -0.16 1.26 16 8 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 9 C -0.15 -2.02 8.79 37.16 0.33 -1.69 16 10 C -0.09 -1.61 4.98 -26.65 -0.13 -1.74 16 11 C 0.09 1.56 2.35 -67.59 -0.16 1.40 16 12 H 0.04 0.68 7.80 -51.93 -0.41 0.28 16 13 N -0.68 -14.51 4.98 -107.86 -0.54 -15.05 16 14 C 0.20 5.13 5.24 -4.98 -0.03 5.11 16 15 C -0.51 -14.57 9.32 -34.44 -0.32 -14.89 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.91 6.14 -51.93 -0.32 0.59 16 26 H 0.05 0.74 7.65 -51.93 -0.40 0.34 16 27 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.80 5.75 -51.93 -0.30 0.50 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.64 6.15 -51.93 -0.32 0.32 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.29 7.43 -51.93 -0.39 0.90 16 36 H 0.33 6.74 6.00 -39.29 -0.24 6.51 16 37 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 38 H 0.03 0.77 7.43 -51.93 -0.39 0.38 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -29.38 297.28 -8.30 -37.68 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.91 Total: 1.89 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.92 Total: -50.34 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.38 -8.30 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036908379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.592 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds