Wall clock time and date at job start Mon Mar 30 2020 03:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50304 * 2 1 4 4 C 1.53041 * 109.49796 * 239.88579 * 2 1 3 5 5 N 1.46850 * 109.51997 * 180.87867 * 4 2 1 6 6 C 1.46904 * 110.99732 * 185.83690 * 5 4 2 7 7 C 1.46849 * 111.20002 * 61.74163 * 5 4 2 8 8 H 1.09001 * 109.45639 * 58.26124 * 7 5 4 9 9 C 1.53000 * 109.46198 * 178.23959 * 7 5 4 10 10 C 1.53039 * 109.52173 * 298.25918 * 7 5 4 11 11 C 1.53116 * 109.50499 * 120.08340 * 2 1 3 12 12 H 1.08996 * 109.52006 * 297.55819 * 11 2 1 13 13 N 1.46901 * 109.52554 * 57.68967 * 11 2 1 14 14 C 1.46895 * 110.99816 * 204.99906 * 13 11 2 15 15 C 1.50706 * 109.47182 * 179.97438 * 14 13 11 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47154 * 89.99418 * 19 17 15 21 21 H 1.48493 * 109.47010 * 209.99942 * 19 17 15 22 22 H 1.48502 * 109.46736 * 329.99638 * 19 17 15 23 23 H 1.09001 * 109.46617 * 299.91688 * 1 2 3 24 24 H 1.09001 * 109.47613 * 59.91600 * 1 2 3 25 25 H 1.09004 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46249 * 300.89183 * 4 2 1 27 27 H 1.08995 * 109.46745 * 60.86222 * 4 2 1 28 28 H 1.09007 * 109.47010 * 63.95666 * 6 5 4 29 29 H 1.09004 * 109.46743 * 183.94960 * 6 5 4 30 30 H 1.08995 * 109.47604 * 303.95476 * 6 5 4 31 31 H 1.09002 * 109.46895 * 59.99908 * 9 7 5 32 32 H 1.09000 * 109.47009 * 179.97438 * 9 7 5 33 33 H 1.09001 * 109.46814 * 300.00014 * 9 7 5 34 34 H 1.09001 * 109.49860 * 299.23699 * 10 7 5 35 35 H 1.08996 * 109.50013 * 179.12018 * 10 7 5 36 36 H 1.00902 * 110.99849 * 328.95284 * 13 11 2 37 37 H 1.09001 * 109.47613 * 60.00104 * 14 13 11 38 38 H 1.08998 * 109.47678 * 300.00000 * 14 13 11 39 39 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0408 -0.7238 -1.2479 5 7 3.5092 -0.7425 -1.2378 6 6 4.0370 -1.3067 -2.4873 7 6 4.0229 -1.4730 -0.0721 8 1 3.6372 -2.4925 -0.0837 9 6 5.5517 -1.5057 -0.1242 10 6 3.5712 -0.7716 1.2108 11 6 2.0412 -0.7235 1.2489 12 1 1.7148 -0.1870 2.1398 13 7 1.5076 -2.0918 1.2766 14 6 1.4551 -2.6086 2.6506 15 6 0.9032 -4.0109 2.6392 16 1 0.6202 -4.4722 1.7045 17 6 0.7653 -4.7073 3.8211 18 7 1.1159 -4.1479 4.9586 19 14 0.0819 -6.4457 3.8069 20 1 1.1968 -7.4147 3.6547 21 1 -0.6311 -6.7077 5.0828 22 1 -0.8635 -6.5965 2.6716 23 1 -0.3632 0.5126 0.8908 24 1 -0.3634 0.5151 -0.8892 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6646 -1.7468 -1.2539 27 1 1.6904 -0.2030 -2.1389 28 1 3.7599 -0.6630 -3.3222 29 1 5.1232 -1.3737 -2.4252 30 1 3.6198 -2.3017 -2.6415 31 1 5.9374 -0.4863 -0.1132 32 1 5.9332 -2.0475 0.7412 33 1 5.8735 -2.0061 -1.0375 34 1 3.9678 0.2435 1.2295 35 1 3.9396 -1.3229 2.0759 36 1 0.5993 -2.1347 0.8392 37 1 0.8107 -1.9699 3.2548 38 1 2.4592 -2.6165 3.0746 39 1 1.0193 -4.6379 5.7902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036908379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:49 Heat of formation + Delta-G solvation = -26.025032 kcal Electronic energy + Delta-G solvation = -16734.553153 eV Core-core repulsion = 14289.574079 eV Total energy + Delta-G solvation = -2444.979075 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70187 -37.08101 -35.17161 -33.95577 -32.53440 -29.71236 -28.42222 -27.10710 -25.41288 -24.20793 -23.12207 -21.49564 -19.81213 -18.53991 -17.03063 -16.54868 -16.40094 -16.17338 -15.67954 -15.52626 -14.67585 -14.42114 -14.11376 -13.80181 -13.69666 -13.44633 -12.95633 -12.90484 -12.73541 -12.69193 -12.64710 -12.55020 -12.24140 -12.09039 -11.82827 -11.66974 -11.29266 -11.15132 -10.94208 -10.65955 -9.29490 -8.93053 -8.24062 -6.35335 1.38240 1.40093 1.51221 2.37682 3.05746 3.09096 3.59745 3.79008 3.95745 4.06543 4.11169 4.37399 4.49571 4.54916 4.65068 4.71140 4.75190 4.80307 4.84258 4.88525 4.93338 5.02107 5.06862 5.07429 5.13372 5.22985 5.24737 5.26080 5.30323 5.39878 5.51569 5.61731 6.03079 6.25021 6.30787 6.48797 6.74554 6.90779 7.35860 8.87557 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.007195 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.209440 B = 3890.707688 C = 4174.438489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 H 0.088 0.912 4 C 0.071 3.929 5 N -0.539 5.539 6 C 0.020 3.980 7 C 0.093 3.907 8 H 0.026 0.974 9 C -0.142 4.142 10 C -0.092 4.092 11 C 0.081 3.919 12 H 0.016 0.984 13 N -0.677 5.677 14 C 0.215 3.785 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.971 3.029 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.263 1.263 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.015 0.985 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.332 0.668 37 H -0.046 1.046 38 H -0.003 1.003 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 7.801 -13.365 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.106 0.894 4 C -0.057 4.057 5 N -0.264 5.264 6 C -0.128 4.128 7 C -0.016 4.016 8 H 0.044 0.956 9 C -0.199 4.199 10 C -0.130 4.130 11 C -0.030 4.030 12 H 0.035 0.965 13 N -0.310 5.310 14 C 0.087 3.913 15 C -0.572 4.572 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.796 3.204 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.187 1.187 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.153 0.847 37 H -0.028 1.028 38 H 0.015 0.985 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.459 7.960 -13.291 16.121 hybrid contribution -1.336 -1.298 1.112 2.169 sum 3.124 6.662 -12.179 14.230 Atomic orbital electron populations 1.21821 0.94396 1.01634 1.02639 1.21255 0.95699 0.99653 0.93325 0.89382 1.22003 0.87270 0.98701 0.97726 1.62040 1.08069 1.53752 1.02517 1.22501 1.01294 0.97472 0.91521 1.21357 0.95316 0.94885 0.90030 0.95629 1.21899 0.93576 1.02567 1.01867 1.21511 0.94578 1.00321 0.96627 1.21649 0.95668 0.89066 0.96594 0.96550 1.60649 1.30518 1.20328 1.19520 1.19147 0.93713 0.93550 0.84885 1.21529 1.42229 1.00143 0.93315 0.92054 1.25942 0.95799 1.02992 0.94912 1.70097 1.49212 1.39455 0.98644 0.85355 0.78553 0.78771 0.77758 1.19933 1.20560 1.18745 0.93090 0.89874 0.93425 0.95732 0.89344 0.90075 0.90045 0.96675 0.91247 0.92973 0.91330 0.90550 0.94287 0.84743 1.02809 0.98498 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.92 71.98 0.64 -3.18 16 2 C -0.08 -2.29 2.67 -10.74 -0.03 -2.32 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.07 1.93 4.60 86.33 0.40 2.33 16 5 N -0.54 -14.69 4.75 -897.13 -4.26 -18.95 16 6 C 0.02 0.44 9.30 127.69 1.19 1.63 16 7 C 0.09 2.94 2.30 44.94 0.10 3.05 16 8 H 0.03 1.00 7.68 -2.39 -0.02 0.98 16 9 C -0.14 -3.68 8.79 71.98 0.63 -3.05 16 10 C -0.09 -3.22 4.98 30.65 0.15 -3.07 16 11 C 0.08 2.98 2.35 44.99 0.11 3.09 16 12 H 0.02 0.67 7.80 -2.39 -0.02 0.65 16 13 N -0.68 -29.77 4.98 -495.17 -2.47 -32.24 16 14 C 0.21 11.86 5.24 85.56 0.45 12.30 16 15 C -0.53 -31.14 9.32 25.60 0.24 -30.90 16 16 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 19 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.37 6.14 -2.38 -0.01 1.36 16 26 H 0.02 0.78 7.65 -2.39 -0.02 0.76 16 27 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 28 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.08 1.61 5.75 -2.39 -0.01 1.60 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.55 6.15 -2.39 -0.01 1.53 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.04 1.56 7.43 -2.39 -0.02 1.54 16 36 H 0.33 14.04 6.00 -89.69 -0.54 13.50 16 37 H -0.05 -2.74 8.06 -2.39 -0.02 -2.75 16 38 H 0.00 -0.19 7.43 -2.39 -0.02 -0.20 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -64.46 297.28 0.39 -64.07 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.46 Total: 16.85 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 4.34 Total: -19.56 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -6.44 Total: -108.39 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.46 0.39 -64.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036908379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.046 kcal (2) G-P(sol) polarization free energy of solvation -64.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds