Wall clock time and date at job start Mon Mar 30 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.53757 * 2 1 4 4 C 1.53041 * 109.50143 * 239.89620 * 2 1 3 5 5 N 1.46851 * 109.52247 * 180.88270 * 4 2 1 6 6 C 1.46901 * 110.99833 * 185.83918 * 5 4 2 7 7 C 1.46846 * 111.19762 * 61.74407 * 5 4 2 8 8 H 1.08993 * 109.46633 * 178.23872 * 7 5 4 9 9 C 1.53009 * 109.45530 * 58.26708 * 7 5 4 10 10 C 1.53036 * 109.52401 * 298.26002 * 7 5 4 11 11 C 1.53114 * 109.28025 * 59.17813 * 10 7 5 12 12 H 1.09003 * 109.52594 * 62.31747 * 11 10 7 13 13 N 1.46904 * 109.52496 * 182.44200 * 11 10 7 14 14 C 1.46899 * 111.00029 * 275.00172 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99751 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46999 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46942 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46979 * 239.99580 * 19 17 15 23 23 H 1.09007 * 109.46882 * 299.90699 * 1 2 3 24 24 H 1.08999 * 109.46809 * 59.90271 * 1 2 3 25 25 H 1.08996 * 109.47415 * 179.90386 * 1 2 3 26 26 H 1.09002 * 109.46209 * 60.86719 * 4 2 1 27 27 H 1.08999 * 109.45187 * 300.89454 * 4 2 1 28 28 H 1.08994 * 109.47013 * 295.79342 * 6 5 4 29 29 H 1.09002 * 109.46984 * 55.79175 * 6 5 4 30 30 H 1.08997 * 109.46605 * 175.78905 * 6 5 4 31 31 H 1.09002 * 109.46651 * 299.95496 * 9 7 5 32 32 H 1.08996 * 109.47090 * 59.95092 * 9 7 5 33 33 H 1.08993 * 109.47063 * 179.97438 * 9 7 5 34 34 H 1.09005 * 109.50221 * 299.23427 * 10 7 5 35 35 H 1.09003 * 109.54040 * 179.13835 * 10 7 5 36 36 H 1.00902 * 111.00190 * 151.03873 * 13 11 10 37 37 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 38 38 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 39 39 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7236 -1.2480 5 7 3.5093 -0.7423 -1.2379 6 6 4.0372 -1.3062 -2.4874 7 6 4.0229 -1.4732 -0.0723 8 1 5.1119 -1.4966 -0.1093 9 6 3.4815 -2.9042 -0.0890 10 6 3.5711 -0.7721 1.2108 11 6 2.0412 -0.7239 1.2487 12 1 1.6451 -1.7392 1.2702 13 7 1.6024 -0.0004 2.4496 14 6 1.5397 -0.8975 3.6112 15 6 1.0875 -0.1215 4.8214 16 1 0.8691 0.9327 4.7362 17 6 0.9538 -0.7572 6.0375 18 7 1.2203 -2.0409 6.1413 19 14 0.3927 0.2045 7.5374 20 1 0.1586 1.6210 7.1581 21 1 -0.8672 -0.3833 8.0594 22 1 1.4411 0.1403 8.5872 23 1 -0.3633 0.5124 0.8909 24 1 -0.3633 0.5153 -0.8891 25 1 -0.3634 -1.0276 -0.0017 26 1 1.6905 -0.2024 -2.1390 27 1 1.6646 -1.7465 -1.2541 28 1 3.7371 -2.3508 -2.5699 29 1 3.6410 -0.7464 -3.3346 30 1 5.1251 -1.2397 -2.4848 31 1 2.3923 -2.8810 -0.0517 32 1 3.8031 -3.4037 -1.0028 33 1 3.8629 -3.4470 0.7757 34 1 3.9678 0.2430 1.2298 35 1 3.9394 -1.3230 2.0763 36 1 0.7145 0.4530 2.2944 37 1 0.8329 -1.7027 3.4106 38 1 2.5272 -1.3191 3.7985 39 1 1.1265 -2.4881 6.9970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036908380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:51 Heat of formation + Delta-G solvation = -6.640647 kcal Electronic energy + Delta-G solvation = -16611.601059 eV Core-core repulsion = 14167.462554 eV Total energy + Delta-G solvation = -2444.138505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71012 -35.73648 -33.25885 -32.39570 -31.07747 -27.94257 -27.00714 -25.85453 -24.62772 -22.60552 -20.98265 -20.74814 -18.40214 -16.56259 -15.65782 -15.31965 -14.82461 -14.68031 -14.27583 -13.85809 -13.26440 -12.94621 -12.92494 -12.46370 -12.27440 -12.02863 -12.00122 -11.78102 -11.45432 -11.34279 -11.09775 -10.82490 -10.78508 -10.56219 -10.34710 -10.04323 -9.98780 -9.56503 -9.06281 -8.45347 -8.16055 -7.19805 -6.00683 -4.02173 3.32486 3.39700 3.45107 4.03395 4.45324 4.94094 5.00793 5.03433 5.21741 5.32939 5.35321 5.39088 5.49563 5.52371 5.60816 5.68888 5.74642 5.82400 5.85103 5.94189 6.05964 6.14517 6.20411 6.23414 6.42027 6.44928 6.47913 6.67576 6.87315 7.22841 7.25114 7.33852 7.47659 7.83783 8.18320 8.48297 8.68882 9.08191 9.62850 11.10491 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.006149 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.167929 B = 4552.679839 C = 4877.601788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.083 0.917 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.023 3.977 7 C 0.082 3.918 8 H 0.078 0.922 9 C -0.189 4.189 10 C -0.097 4.097 11 C 0.092 3.908 12 H 0.033 0.967 13 N -0.687 5.687 14 C 0.196 3.804 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.329 0.671 37 H -0.017 1.017 38 H 0.027 0.973 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 0.327 -15.412 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.067 4.067 5 N -0.259 5.259 6 C -0.125 4.125 7 C -0.027 4.027 8 H 0.097 0.903 9 C -0.247 4.247 10 C -0.135 4.135 11 C -0.019 4.019 12 H 0.051 0.949 13 N -0.319 5.319 14 C 0.069 3.931 15 C -0.550 4.550 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.210 1.210 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.001 0.999 38 H 0.045 0.955 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.479 0.904 -15.084 15.506 hybrid contribution -1.340 -1.105 0.646 1.853 sum 2.139 -0.200 -14.438 14.597 Atomic orbital electron populations 1.21845 0.95401 1.01640 1.01883 1.21313 0.94790 1.00916 0.93913 0.89836 1.22136 0.87283 0.98959 0.98348 1.62155 1.08221 1.53410 1.02133 1.22359 1.00483 0.97518 0.92184 1.21737 0.98964 0.91011 0.91003 0.90350 1.22505 1.02392 0.98159 1.01673 1.21561 0.95952 1.01228 0.94803 1.21507 0.94942 0.95354 0.90062 0.94920 1.60698 1.34819 1.33090 1.03255 1.19564 0.96203 0.90514 0.86839 1.21253 1.44375 0.96085 0.93331 0.91963 1.24989 0.95674 0.94905 0.99033 1.69976 1.49573 1.09173 1.25134 0.86449 0.78160 0.80172 0.82680 1.19644 1.21151 1.21017 0.91691 0.92841 0.93111 0.91292 0.94696 0.95633 0.91821 0.91628 0.91904 0.93180 0.91785 0.90824 0.91368 0.85237 0.99906 0.95472 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.00 37.16 0.33 -1.71 16 2 C -0.09 -1.35 2.52 -90.53 -0.23 -1.58 16 3 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 4 C 0.06 0.80 4.45 -3.83 -0.02 0.78 16 5 N -0.54 -7.11 4.86 -234.92 -1.14 -8.25 16 6 C 0.02 0.24 9.32 60.07 0.56 0.80 16 7 C 0.08 1.15 2.93 -67.72 -0.20 0.95 16 8 H 0.08 1.04 8.12 -51.93 -0.42 0.61 16 9 C -0.19 -2.55 8.18 37.16 0.30 -2.25 16 10 C -0.10 -1.67 5.10 -26.65 -0.14 -1.80 16 11 C 0.09 1.66 1.70 -67.59 -0.12 1.55 16 12 H 0.03 0.64 6.22 -51.93 -0.32 0.32 16 13 N -0.69 -14.95 6.30 -107.86 -0.68 -15.63 16 14 C 0.20 5.19 5.24 -4.98 -0.03 5.17 16 15 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H 0.06 0.95 6.32 -51.93 -0.33 0.62 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.03 0.47 6.19 -51.93 -0.32 0.14 16 28 H 0.03 0.26 6.46 -51.93 -0.34 -0.07 16 29 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.92 4.80 -51.93 -0.25 0.67 16 32 H 0.05 0.59 6.54 -51.93 -0.34 0.25 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.28 7.52 -51.93 -0.39 0.89 16 36 H 0.33 6.86 6.32 -39.29 -0.25 6.61 16 37 H -0.02 -0.48 8.06 -51.93 -0.42 -0.90 16 38 H 0.03 0.78 7.49 -51.93 -0.39 0.39 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 293.71 15.07 4.43 4.43 Total: -1.00 -29.86 293.71 -8.31 -38.17 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.69 Total: 2.41 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 0.06 Total: -11.60 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -1.08 Total: -50.29 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.86 -8.31 -38.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036908380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.527 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds