Wall clock time and date at job start Mon Mar 30 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.53757 * 2 1 4 4 C 1.53041 * 109.50143 * 239.89620 * 2 1 3 5 5 N 1.46851 * 109.52247 * 180.88270 * 4 2 1 6 6 C 1.46901 * 110.99833 * 185.83918 * 5 4 2 7 7 C 1.46846 * 111.19762 * 61.74407 * 5 4 2 8 8 H 1.08993 * 109.46633 * 178.23872 * 7 5 4 9 9 C 1.53009 * 109.45530 * 58.26708 * 7 5 4 10 10 C 1.53036 * 109.52401 * 298.26002 * 7 5 4 11 11 C 1.53114 * 109.28025 * 59.17813 * 10 7 5 12 12 H 1.09003 * 109.52594 * 62.31747 * 11 10 7 13 13 N 1.46904 * 109.52496 * 182.44200 * 11 10 7 14 14 C 1.46899 * 111.00029 * 275.00172 * 13 11 10 15 15 C 1.50703 * 109.47107 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99751 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46999 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46942 * 119.99666 * 19 17 15 22 22 H 1.48504 * 109.46979 * 239.99580 * 19 17 15 23 23 H 1.09007 * 109.46882 * 299.90699 * 1 2 3 24 24 H 1.08999 * 109.46809 * 59.90271 * 1 2 3 25 25 H 1.08996 * 109.47415 * 179.90386 * 1 2 3 26 26 H 1.09002 * 109.46209 * 60.86719 * 4 2 1 27 27 H 1.08999 * 109.45187 * 300.89454 * 4 2 1 28 28 H 1.08994 * 109.47013 * 295.79342 * 6 5 4 29 29 H 1.09002 * 109.46984 * 55.79175 * 6 5 4 30 30 H 1.08997 * 109.46605 * 175.78905 * 6 5 4 31 31 H 1.09002 * 109.46651 * 299.95496 * 9 7 5 32 32 H 1.08996 * 109.47090 * 59.95092 * 9 7 5 33 33 H 1.08993 * 109.47063 * 179.97438 * 9 7 5 34 34 H 1.09005 * 109.50221 * 299.23427 * 10 7 5 35 35 H 1.09003 * 109.54040 * 179.13835 * 10 7 5 36 36 H 1.00902 * 111.00190 * 151.03873 * 13 11 10 37 37 H 1.09002 * 109.47043 * 299.99792 * 14 13 11 38 38 H 1.09001 * 109.47354 * 59.99854 * 14 13 11 39 39 H 0.97000 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0409 -0.7236 -1.2480 5 7 3.5093 -0.7423 -1.2379 6 6 4.0372 -1.3062 -2.4874 7 6 4.0229 -1.4732 -0.0723 8 1 5.1119 -1.4966 -0.1093 9 6 3.4815 -2.9042 -0.0890 10 6 3.5711 -0.7721 1.2108 11 6 2.0412 -0.7239 1.2487 12 1 1.6451 -1.7392 1.2702 13 7 1.6024 -0.0004 2.4496 14 6 1.5397 -0.8975 3.6112 15 6 1.0875 -0.1215 4.8214 16 1 0.8691 0.9327 4.7362 17 6 0.9538 -0.7572 6.0375 18 7 1.2203 -2.0409 6.1413 19 14 0.3927 0.2045 7.5374 20 1 0.1586 1.6210 7.1581 21 1 -0.8672 -0.3833 8.0594 22 1 1.4411 0.1403 8.5872 23 1 -0.3633 0.5124 0.8909 24 1 -0.3633 0.5153 -0.8891 25 1 -0.3634 -1.0276 -0.0017 26 1 1.6905 -0.2024 -2.1390 27 1 1.6646 -1.7465 -1.2541 28 1 3.7371 -2.3508 -2.5699 29 1 3.6410 -0.7464 -3.3346 30 1 5.1251 -1.2397 -2.4848 31 1 2.3923 -2.8810 -0.0517 32 1 3.8031 -3.4037 -1.0028 33 1 3.8629 -3.4470 0.7757 34 1 3.9678 0.2430 1.2298 35 1 3.9394 -1.3230 2.0763 36 1 0.7145 0.4530 2.2944 37 1 0.8329 -1.7027 3.4106 38 1 2.5272 -1.3191 3.7985 39 1 1.1265 -2.4881 6.9970 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036908380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:51 Heat of formation + Delta-G solvation = -27.820951 kcal Electronic energy + Delta-G solvation = -16612.519505 eV Core-core repulsion = 14167.462554 eV Total energy + Delta-G solvation = -2445.056952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93782 -37.25942 -35.09415 -33.85858 -32.64211 -29.34652 -28.45233 -27.30318 -25.85399 -24.32430 -22.63044 -22.02759 -19.67234 -18.60999 -17.03779 -16.77470 -16.55065 -15.94171 -15.71874 -15.12352 -14.63661 -14.54161 -14.29391 -13.96777 -13.70280 -13.60342 -13.15793 -13.06154 -12.78406 -12.72138 -12.66278 -12.56091 -12.17546 -12.11763 -11.87427 -11.59005 -11.47915 -11.14879 -10.94733 -10.66368 -9.18191 -9.07219 -8.23318 -6.34704 1.40156 1.41166 1.55282 2.39526 3.00529 3.09868 3.50976 3.75691 3.83928 4.03340 4.16899 4.26282 4.40491 4.42095 4.51500 4.57568 4.64282 4.74011 4.75326 4.81532 4.92544 4.98014 5.01378 5.06353 5.09824 5.15911 5.24236 5.25427 5.29125 5.32364 5.50082 5.64699 6.04059 6.16066 6.23668 6.49441 6.75714 6.91544 7.36732 8.88601 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.044493 B = 0.006149 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.167929 B = 4552.679839 C = 4877.601788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.078 0.922 4 C 0.065 3.935 5 N -0.545 5.545 6 C 0.023 3.977 7 C 0.089 3.911 8 H 0.091 0.909 9 C -0.183 4.183 10 C -0.094 4.094 11 C 0.091 3.909 12 H 0.016 0.984 13 N -0.686 5.686 14 C 0.215 3.785 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.334 0.666 37 H -0.046 1.046 38 H -0.003 1.003 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 1.262 -16.754 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.063 4.063 5 N -0.269 5.269 6 C -0.125 4.125 7 C -0.020 4.020 8 H 0.109 0.891 9 C -0.242 4.242 10 C -0.133 4.133 11 C -0.019 4.019 12 H 0.034 0.966 13 N -0.318 5.318 14 C 0.087 3.913 15 C -0.573 4.573 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.204 1.204 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.154 0.846 37 H -0.028 1.028 38 H 0.015 0.985 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.273 1.847 -16.457 16.881 hybrid contribution -1.245 -1.415 1.017 2.141 sum 2.028 0.433 -15.439 15.578 Atomic orbital electron populations 1.21819 0.94349 1.01654 1.02621 1.21249 0.95680 1.00232 0.93041 0.90353 1.22119 0.87357 0.98911 0.97920 1.62142 1.08264 1.53676 1.02788 1.22443 1.01095 0.97932 0.91032 1.21602 0.99642 0.90833 0.89943 0.89077 1.22445 1.01403 0.97961 1.02382 1.21493 0.95158 1.00688 0.95919 1.21608 0.95576 0.94544 0.90183 0.96631 1.60608 1.35119 1.32463 1.03610 1.19157 0.93446 0.90172 0.88545 1.21593 1.44943 0.96335 0.94451 0.91817 1.25970 0.95369 0.95912 1.02458 1.70106 1.50216 1.10957 1.26272 0.85266 0.77855 0.78899 0.78159 1.18605 1.20210 1.20362 0.93133 0.89855 0.93474 0.88812 0.94754 0.95087 0.90197 0.90709 0.93237 0.90817 0.92875 0.91697 0.94174 0.84601 1.02836 0.98467 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.00 71.98 0.65 -3.18 16 2 C -0.08 -2.40 2.52 -10.74 -0.03 -2.43 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.07 1.56 4.45 86.33 0.38 1.94 16 5 N -0.55 -13.22 4.86 -897.16 -4.36 -17.58 16 6 C 0.02 0.40 9.32 127.69 1.19 1.59 16 7 C 0.09 2.43 2.93 44.94 0.13 2.57 16 8 H 0.09 2.28 8.12 -2.39 -0.02 2.26 16 9 C -0.18 -4.85 8.18 71.99 0.59 -4.26 16 10 C -0.09 -3.33 5.10 30.64 0.16 -3.17 16 11 C 0.09 3.39 1.70 44.99 0.08 3.46 16 12 H 0.02 0.65 6.22 -2.39 -0.01 0.63 16 13 N -0.69 -30.95 6.30 -495.15 -3.12 -34.07 16 14 C 0.21 11.97 5.24 85.56 0.45 12.42 16 15 C -0.54 -31.43 9.32 25.60 0.24 -31.19 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 19 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H 0.05 1.46 6.32 -2.38 -0.02 1.44 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 27 H 0.03 0.84 6.19 -2.39 -0.01 0.83 16 28 H 0.03 0.53 6.46 -2.39 -0.02 0.51 16 29 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.44 4.80 -2.39 -0.01 1.42 16 32 H 0.07 1.59 6.54 -2.39 -0.02 1.58 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.04 1.61 7.52 -2.39 -0.02 1.59 16 36 H 0.33 14.31 6.32 -89.69 -0.57 13.74 16 37 H -0.05 -2.77 8.06 -2.39 -0.02 -2.79 16 38 H 0.00 -0.17 7.49 -2.39 -0.02 -0.19 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -65.27 293.71 -0.43 -65.70 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.44 Total: 17.99 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.30 Total: -21.73 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -7.19 Total: -109.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.27 -0.43 -65.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036908380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.876 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds