Wall clock time and date at job start Mon Mar 30 2020 02:47:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53005 * 109.46670 * 2 1
4 4 N 1.46895 * 109.47238 * 119.99669 * 2 1 3
5 5 C 1.46898 * 110.99923 * 85.00263 * 4 2 1
6 6 C 1.53008 * 109.47035 * 179.97438 * 5 4 2
7 7 N 1.46903 * 109.46710 * 180.02562 * 6 5 4
8 8 C 1.46903 * 110.99590 * 190.00288 * 7 6 5
9 9 C 1.50697 * 109.47062 * 161.83379 * 8 7 6
10 10 H 1.08003 * 120.00185 * 354.36999 * 9 8 7
11 11 C 1.37875 * 119.99982 * 174.36084 * 9 8 7
12 12 N 1.31510 * 120.00078 * 0.02562 * 11 9 8
13 13 Si 1.86802 * 119.99969 * 180.02562 * 11 9 8
14 14 H 1.48499 * 109.47311 * 60.00424 * 13 11 9
15 15 H 1.48504 * 109.47307 * 180.02562 * 13 11 9
16 16 H 1.48501 * 109.47186 * 300.00466 * 13 11 9
17 17 C 1.46897 * 111.00263 * 66.04954 * 7 6 5
18 18 C 1.52997 * 117.50034 * 261.91095 * 17 7 6
19 19 C 1.52999 * 117.50125 * 193.24834 * 17 7 6
20 20 H 1.08997 * 109.46579 * 180.02562 * 1 2 3
21 21 H 1.09003 * 109.46987 * 299.99566 * 1 2 3
22 22 H 1.08994 * 109.47172 * 60.00449 * 1 2 3
23 23 H 1.08997 * 109.47369 * 239.99856 * 2 1 3
24 24 H 1.09005 * 109.47011 * 179.97438 * 3 2 1
25 25 H 1.09002 * 109.47169 * 299.99934 * 3 2 1
26 26 H 1.08997 * 109.47342 * 59.99839 * 3 2 1
27 27 H 1.00902 * 111.00337 * 208.95398 * 4 2 1
28 28 H 1.09003 * 109.47205 * 60.00411 * 5 4 2
29 29 H 1.08994 * 109.47181 * 299.99882 * 5 4 2
30 30 H 1.08994 * 109.47230 * 300.00086 * 6 5 4
31 31 H 1.09001 * 109.47071 * 60.00486 * 6 5 4
32 32 H 1.09002 * 109.46847 * 281.83424 * 8 7 6
33 33 H 1.08995 * 109.47379 * 41.83637 * 8 7 6
34 34 H 0.97004 * 120.00424 * 179.97438 * 12 11 9
35 35 H 1.09005 * 115.54791 * 47.57726 * 17 7 6
36 36 H 1.09000 * 117.49441 * 359.97438 * 18 17 7
37 37 H 1.08995 * 117.50263 * 145.01542 * 18 17 7
38 38 H 1.08994 * 117.49727 * 214.97908 * 19 17 7
39 39 H 1.08998 * 117.49758 * 359.97438 * 19 17 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 2.0197 -0.6924 1.1994
5 6 2.0825 -2.1436 0.9807
6 6 2.5964 -2.8287 2.2487
7 7 2.6598 -4.2800 2.0297
8 6 2.9192 -4.9914 3.2885
9 6 2.5430 -6.4423 3.1323
10 1 2.0664 -6.7818 2.2245
11 6 2.8073 -7.3362 4.1481
12 7 3.3873 -6.9227 5.2536
13 14 2.3415 -9.1348 3.9542
14 1 3.0499 -9.7059 2.7806
15 1 2.7289 -9.8813 5.1781
16 1 0.8749 -9.2471 3.7499
17 6 3.6697 -4.6160 1.0172
18 6 3.1829 -4.8582 -0.4129
19 6 3.6523 -6.0352 0.4459
20 1 -0.3632 -1.0277 0.0005
21 1 -0.3633 0.5138 0.8901
22 1 -0.3633 0.5137 -0.8900
23 1 1.8934 -0.5138 -0.8899
24 1 3.1300 1.4427 0.0005
25 1 1.6765 1.9564 -0.8900
26 1 1.6765 1.9564 0.8899
27 1 2.9173 -0.3306 1.4848
28 1 2.7590 -2.3574 0.1532
29 1 1.0872 -2.5186 0.7426
30 1 3.5918 -2.4537 2.4864
31 1 1.9203 -2.6151 3.0765
32 1 3.9778 -4.9153 3.5373
33 1 2.3255 -4.5460 4.0866
34 1 3.5729 -7.5516 5.9685
35 1 4.6403 -4.1363 1.1441
36 1 2.1133 -4.7686 -0.6024
37 1 3.8334 -4.5383 -1.2269
38 1 4.6114 -6.4891 0.1966
39 1 2.8918 -6.7197 0.8216
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042548466.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:47:29
Heat of formation + Delta-G solvation = 24.490002 kcal
Electronic energy + Delta-G solvation = -16012.036168 eV
Core-core repulsion = 13569.247589 eV
Total energy + Delta-G solvation = -2442.788578 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-38.09185 -36.88136 -33.72915 -32.73562 -31.17962 -27.80264 -27.25982 -25.32480
-22.22633 -21.63468 -21.50055 -20.52146 -19.32619 -16.54652 -15.84756 -15.23461
-14.94067 -14.53714 -14.47606 -14.29635 -13.20961 -13.20055 -12.58939 -12.44452
-12.13261 -12.07618 -11.79374 -11.40688 -11.32429 -11.10176 -10.99151 -10.80156
-10.69807 -10.61658 -10.44080 -9.89706 -9.52392 -9.10844 -9.08178 -8.36524
-8.26977 -7.26546 -5.97549 -3.97482 3.35639 3.39830 3.42300 4.14669
4.47422 4.59854 4.89568 4.94407 5.01681 5.30666 5.37468 5.57101
5.58365 5.61053 5.66944 5.76636 5.79799 5.81141 5.84058 6.03796
6.10275 6.13715 6.18384 6.28306 6.35109 6.50502 6.53767 6.72538
7.03219 7.21080 7.28794 7.42461 7.52531 7.89523 8.16009 8.24315
8.59047 9.08277 9.64953 11.13201
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.039899 B = 0.005579 C = 0.005300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 701.599388 B = 5018.024054 C = 5281.608774
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.079 3.921
3 C -0.153 4.153
4 N -0.688 5.688
5 C 0.066 3.934
6 C 0.063 3.937
7 N -0.510 5.510
8 C 0.197 3.803
9 C -0.499 4.499
10 H 0.068 0.932
11 C 0.054 3.946
12 N -0.901 5.901
13 Si 0.894 3.106
14 H -0.277 1.277
15 H -0.289 1.289
16 H -0.277 1.277
17 C 0.027 3.973
18 C -0.187 4.187
19 C -0.156 4.156
20 H 0.055 0.945
21 H 0.060 0.940
22 H 0.051 0.949
23 H 0.040 0.960
24 H 0.051 0.949
25 H 0.059 0.941
26 H 0.063 0.937
27 H 0.336 0.664
28 H 0.030 0.970
29 H 0.076 0.924
30 H 0.018 0.982
31 H 0.076 0.924
32 H -0.003 1.003
33 H 0.026 0.974
34 H 0.261 0.739
35 H 0.066 0.934
36 H 0.091 0.909
37 H 0.077 0.923
38 H 0.079 0.921
39 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.215 11.460 -10.574 15.640
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.031 4.031
3 C -0.211 4.211
4 N -0.321 5.321
5 C -0.063 4.063
6 C -0.066 4.066
7 N -0.235 5.235
8 C 0.072 3.928
9 C -0.537 4.537
10 H 0.086 0.914
11 C -0.147 4.147
12 N -0.541 5.541
13 Si 0.722 3.278
14 H -0.202 1.202
15 H -0.214 1.214
16 H -0.202 1.202
17 C -0.083 4.083
18 C -0.225 4.225
19 C -0.193 4.193
20 H 0.074 0.926
21 H 0.079 0.921
22 H 0.070 0.930
23 H 0.058 0.942
24 H 0.070 0.930
25 H 0.078 0.922
26 H 0.082 0.918
27 H 0.154 0.846
28 H 0.049 0.951
29 H 0.094 0.906
30 H 0.036 0.964
31 H 0.094 0.906
32 H 0.014 0.986
33 H 0.044 0.956
34 H 0.070 0.930
35 H 0.083 0.917
36 H 0.109 0.891
37 H 0.095 0.905
38 H 0.097 0.903
39 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -2.231 11.213 -10.255 15.358
hybrid contribution 1.464 -0.798 -0.195 1.679
sum -0.767 10.415 -10.451 14.774
Atomic orbital electron populations
1.21787 0.94667 1.02057 1.01233 1.21465 0.96125 0.93883 0.91612
1.21975 1.00630 0.96153 1.02333 1.60482 1.33064 1.04493 1.34042
1.21998 1.01274 0.85863 0.97139 1.21941 0.98563 0.89031 0.97018
1.61847 1.45523 1.04426 1.11726 1.19703 0.95206 0.93544 0.84342
1.21209 1.38243 0.92395 1.01885 0.91440 1.24977 0.95531 0.98849
0.95323 1.69948 1.43013 1.34992 1.06130 0.86623 0.78959 0.84911
0.77304 1.20246 1.21446 1.20225 1.22048 0.93748 1.00462 0.92024
1.23031 1.01039 1.05196 0.93213 1.23158 1.02826 0.91828 1.01448
0.92568 0.92098 0.93037 0.94204 0.92953 0.92201 0.91787 0.84598
0.95140 0.90599 0.96409 0.90592 0.98554 0.95626 0.92983 0.91658
0.89075 0.90491 0.90281 0.86325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.53 9.41 37.16 0.35 -1.18 16
2 C 0.08 0.89 3.22 -67.71 -0.22 0.68 16
3 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16
4 N -0.69 -9.17 6.31 -106.72 -0.67 -9.85 16
5 C 0.07 1.03 5.31 -3.82 -0.02 1.01 16
6 C 0.06 1.17 5.21 -3.82 -0.02 1.15 16
7 N -0.51 -11.07 4.58 -228.08 -1.05 -12.12 16
8 C 0.20 5.15 4.75 -4.98 -0.02 5.13 16
9 C -0.50 -13.82 7.82 -34.44 -0.27 -14.09 16
10 H 0.07 1.84 5.55 -52.48 -0.29 1.54 16
11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16
12 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16
13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16
14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
17 C 0.03 0.53 4.19 -67.72 -0.28 0.24 16
18 C -0.19 -3.14 9.31 -26.69 -0.25 -3.39 16
19 C -0.16 -3.02 9.41 -26.69 -0.25 -3.27 16
20 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16
21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
23 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16
24 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16
25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.34 4.17 8.34 -39.29 -0.33 3.84 16
28 H 0.03 0.47 6.52 -51.93 -0.34 0.13 16
29 H 0.08 1.26 7.43 -51.93 -0.39 0.87 16
30 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16
31 H 0.08 1.48 7.84 -51.93 -0.41 1.07 16
32 H 0.00 -0.10 8.02 -51.93 -0.42 -0.51 16
33 H 0.03 0.72 7.76 -51.93 -0.40 0.31 16
34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
36 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16
37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16
38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16
39 H 0.12 2.59 5.32 -51.93 -0.28 2.31 16
LS Contribution 310.05 15.07 4.67 4.67
Total: -1.00 -28.91 310.05 -9.07 -37.98
By element:
Atomic # 1 Polarization: 9.21 SS G_CDS: -7.00 Total: 2.21 kcal
Atomic # 6 Polarization: -12.62 SS G_CDS: -0.74 Total: -13.36 kcal
Atomic # 7 Polarization: -47.11 SS G_CDS: -0.98 Total: -48.09 kcal
Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -28.91 -9.07 -37.98 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042548466.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.469 kcal
(2) G-P(sol) polarization free energy of solvation -28.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds