Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46670 * 2 1 4 4 N 1.46895 * 109.47238 * 119.99669 * 2 1 3 5 5 C 1.46898 * 110.99923 * 85.00263 * 4 2 1 6 6 C 1.53008 * 109.47035 * 179.97438 * 5 4 2 7 7 N 1.46903 * 109.46710 * 180.02562 * 6 5 4 8 8 C 1.46903 * 110.99590 * 190.00288 * 7 6 5 9 9 C 1.50697 * 109.47062 * 161.83379 * 8 7 6 10 10 H 1.08003 * 120.00185 * 354.36999 * 9 8 7 11 11 C 1.37875 * 119.99982 * 174.36084 * 9 8 7 12 12 N 1.31510 * 120.00078 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47311 * 60.00424 * 13 11 9 15 15 H 1.48504 * 109.47307 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47186 * 300.00466 * 13 11 9 17 17 C 1.46897 * 111.00263 * 66.04954 * 7 6 5 18 18 C 1.52997 * 117.50034 * 261.91095 * 17 7 6 19 19 C 1.52999 * 117.50125 * 193.24834 * 17 7 6 20 20 H 1.08997 * 109.46579 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46987 * 299.99566 * 1 2 3 22 22 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 23 23 H 1.08997 * 109.47369 * 239.99856 * 2 1 3 24 24 H 1.09005 * 109.47011 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47169 * 299.99934 * 3 2 1 26 26 H 1.08997 * 109.47342 * 59.99839 * 3 2 1 27 27 H 1.00902 * 111.00337 * 208.95398 * 4 2 1 28 28 H 1.09003 * 109.47205 * 60.00411 * 5 4 2 29 29 H 1.08994 * 109.47181 * 299.99882 * 5 4 2 30 30 H 1.08994 * 109.47230 * 300.00086 * 6 5 4 31 31 H 1.09001 * 109.47071 * 60.00486 * 6 5 4 32 32 H 1.09002 * 109.46847 * 281.83424 * 8 7 6 33 33 H 1.08995 * 109.47379 * 41.83637 * 8 7 6 34 34 H 0.97004 * 120.00424 * 179.97438 * 12 11 9 35 35 H 1.09005 * 115.54791 * 47.57726 * 17 7 6 36 36 H 1.09000 * 117.49441 * 359.97438 * 18 17 7 37 37 H 1.08995 * 117.50263 * 145.01542 * 18 17 7 38 38 H 1.08994 * 117.49727 * 214.97908 * 19 17 7 39 39 H 1.08998 * 117.49758 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 -2.1436 0.9807 6 6 2.5964 -2.8287 2.2487 7 7 2.6598 -4.2800 2.0297 8 6 2.9192 -4.9914 3.2885 9 6 2.5430 -6.4423 3.1323 10 1 2.0664 -6.7818 2.2245 11 6 2.8073 -7.3362 4.1481 12 7 3.3873 -6.9227 5.2536 13 14 2.3415 -9.1348 3.9542 14 1 3.0499 -9.7059 2.7806 15 1 2.7289 -9.8813 5.1781 16 1 0.8749 -9.2471 3.7499 17 6 3.6697 -4.6160 1.0172 18 6 3.1829 -4.8582 -0.4129 19 6 3.6523 -6.0352 0.4459 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4427 0.0005 25 1 1.6765 1.9564 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 2.9173 -0.3306 1.4848 28 1 2.7590 -2.3574 0.1532 29 1 1.0872 -2.5186 0.7426 30 1 3.5918 -2.4537 2.4864 31 1 1.9203 -2.6151 3.0765 32 1 3.9778 -4.9153 3.5373 33 1 2.3255 -4.5460 4.0866 34 1 3.5729 -7.5516 5.9685 35 1 4.6403 -4.1363 1.1441 36 1 2.1133 -4.7686 -0.6024 37 1 3.8334 -4.5383 -1.2269 38 1 4.6114 -6.4891 0.1966 39 1 2.8918 -6.7197 0.8216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = 24.490002 kcal Electronic energy + Delta-G solvation = -16012.036168 eV Core-core repulsion = 13569.247589 eV Total energy + Delta-G solvation = -2442.788578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.09185 -36.88136 -33.72915 -32.73562 -31.17962 -27.80264 -27.25982 -25.32480 -22.22633 -21.63468 -21.50055 -20.52146 -19.32619 -16.54652 -15.84756 -15.23461 -14.94067 -14.53714 -14.47606 -14.29635 -13.20961 -13.20055 -12.58939 -12.44452 -12.13261 -12.07618 -11.79374 -11.40688 -11.32429 -11.10176 -10.99151 -10.80156 -10.69807 -10.61658 -10.44080 -9.89706 -9.52392 -9.10844 -9.08178 -8.36524 -8.26977 -7.26546 -5.97549 -3.97482 3.35639 3.39830 3.42300 4.14669 4.47422 4.59854 4.89568 4.94407 5.01681 5.30666 5.37468 5.57101 5.58365 5.61053 5.66944 5.76636 5.79799 5.81141 5.84058 6.03796 6.10275 6.13715 6.18384 6.28306 6.35109 6.50502 6.53767 6.72538 7.03219 7.21080 7.28794 7.42461 7.52531 7.89523 8.16009 8.24315 8.59047 9.08277 9.64953 11.13201 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039899 B = 0.005579 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.599388 B = 5018.024054 C = 5281.608774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 C -0.153 4.153 4 N -0.688 5.688 5 C 0.066 3.934 6 C 0.063 3.937 7 N -0.510 5.510 8 C 0.197 3.803 9 C -0.499 4.499 10 H 0.068 0.932 11 C 0.054 3.946 12 N -0.901 5.901 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.027 3.973 18 C -0.187 4.187 19 C -0.156 4.156 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.336 0.664 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.018 0.982 31 H 0.076 0.924 32 H -0.003 1.003 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 11.460 -10.574 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.211 4.211 4 N -0.321 5.321 5 C -0.063 4.063 6 C -0.066 4.066 7 N -0.235 5.235 8 C 0.072 3.928 9 C -0.537 4.537 10 H 0.086 0.914 11 C -0.147 4.147 12 N -0.541 5.541 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.083 4.083 18 C -0.225 4.225 19 C -0.193 4.193 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.094 0.906 32 H 0.014 0.986 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.231 11.213 -10.255 15.358 hybrid contribution 1.464 -0.798 -0.195 1.679 sum -0.767 10.415 -10.451 14.774 Atomic orbital electron populations 1.21787 0.94667 1.02057 1.01233 1.21465 0.96125 0.93883 0.91612 1.21975 1.00630 0.96153 1.02333 1.60482 1.33064 1.04493 1.34042 1.21998 1.01274 0.85863 0.97139 1.21941 0.98563 0.89031 0.97018 1.61847 1.45523 1.04426 1.11726 1.19703 0.95206 0.93544 0.84342 1.21209 1.38243 0.92395 1.01885 0.91440 1.24977 0.95531 0.98849 0.95323 1.69948 1.43013 1.34992 1.06130 0.86623 0.78959 0.84911 0.77304 1.20246 1.21446 1.20225 1.22048 0.93748 1.00462 0.92024 1.23031 1.01039 1.05196 0.93213 1.23158 1.02826 0.91828 1.01448 0.92568 0.92098 0.93037 0.94204 0.92953 0.92201 0.91787 0.84598 0.95140 0.90599 0.96409 0.90592 0.98554 0.95626 0.92983 0.91658 0.89075 0.90491 0.90281 0.86325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.41 37.16 0.35 -1.18 16 2 C 0.08 0.89 3.22 -67.71 -0.22 0.68 16 3 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 4 N -0.69 -9.17 6.31 -106.72 -0.67 -9.85 16 5 C 0.07 1.03 5.31 -3.82 -0.02 1.01 16 6 C 0.06 1.17 5.21 -3.82 -0.02 1.15 16 7 N -0.51 -11.07 4.58 -228.08 -1.05 -12.12 16 8 C 0.20 5.15 4.75 -4.98 -0.02 5.13 16 9 C -0.50 -13.82 7.82 -34.44 -0.27 -14.09 16 10 H 0.07 1.84 5.55 -52.48 -0.29 1.54 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 13 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.03 0.53 4.19 -67.72 -0.28 0.24 16 18 C -0.19 -3.14 9.31 -26.69 -0.25 -3.39 16 19 C -0.16 -3.02 9.41 -26.69 -0.25 -3.27 16 20 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 24 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.34 4.17 8.34 -39.29 -0.33 3.84 16 28 H 0.03 0.47 6.52 -51.93 -0.34 0.13 16 29 H 0.08 1.26 7.43 -51.93 -0.39 0.87 16 30 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.08 1.48 7.84 -51.93 -0.41 1.07 16 32 H 0.00 -0.10 8.02 -51.93 -0.42 -0.51 16 33 H 0.03 0.72 7.76 -51.93 -0.40 0.31 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.12 2.59 5.32 -51.93 -0.28 2.31 16 LS Contribution 310.05 15.07 4.67 4.67 Total: -1.00 -28.91 310.05 -9.07 -37.98 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.00 Total: 2.21 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.74 Total: -13.36 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.98 Total: -48.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.91 -9.07 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.469 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds