Wall clock time and date at job start Mon Mar 30 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46670 * 2 1 4 4 N 1.46895 * 109.47238 * 119.99669 * 2 1 3 5 5 C 1.46898 * 110.99923 * 85.00263 * 4 2 1 6 6 C 1.53008 * 109.47035 * 179.97438 * 5 4 2 7 7 N 1.46903 * 109.46710 * 180.02562 * 6 5 4 8 8 C 1.46903 * 110.99590 * 190.00288 * 7 6 5 9 9 C 1.50697 * 109.47062 * 161.83379 * 8 7 6 10 10 H 1.08003 * 120.00185 * 354.36999 * 9 8 7 11 11 C 1.37875 * 119.99982 * 174.36084 * 9 8 7 12 12 N 1.31510 * 120.00078 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47311 * 60.00424 * 13 11 9 15 15 H 1.48504 * 109.47307 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47186 * 300.00466 * 13 11 9 17 17 C 1.46897 * 111.00263 * 66.04954 * 7 6 5 18 18 C 1.52997 * 117.50034 * 261.91095 * 17 7 6 19 19 C 1.52999 * 117.50125 * 193.24834 * 17 7 6 20 20 H 1.08997 * 109.46579 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46987 * 299.99566 * 1 2 3 22 22 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 23 23 H 1.08997 * 109.47369 * 239.99856 * 2 1 3 24 24 H 1.09005 * 109.47011 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47169 * 299.99934 * 3 2 1 26 26 H 1.08997 * 109.47342 * 59.99839 * 3 2 1 27 27 H 1.00902 * 111.00337 * 208.95398 * 4 2 1 28 28 H 1.09003 * 109.47205 * 60.00411 * 5 4 2 29 29 H 1.08994 * 109.47181 * 299.99882 * 5 4 2 30 30 H 1.08994 * 109.47230 * 300.00086 * 6 5 4 31 31 H 1.09001 * 109.47071 * 60.00486 * 6 5 4 32 32 H 1.09002 * 109.46847 * 281.83424 * 8 7 6 33 33 H 1.08995 * 109.47379 * 41.83637 * 8 7 6 34 34 H 0.97004 * 120.00424 * 179.97438 * 12 11 9 35 35 H 1.09005 * 115.54791 * 47.57726 * 17 7 6 36 36 H 1.09000 * 117.49441 * 359.97438 * 18 17 7 37 37 H 1.08995 * 117.50263 * 145.01542 * 18 17 7 38 38 H 1.08994 * 117.49727 * 214.97908 * 19 17 7 39 39 H 1.08998 * 117.49758 * 359.97438 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 -2.1436 0.9807 6 6 2.5964 -2.8287 2.2487 7 7 2.6598 -4.2800 2.0297 8 6 2.9192 -4.9914 3.2885 9 6 2.5430 -6.4423 3.1323 10 1 2.0664 -6.7818 2.2245 11 6 2.8073 -7.3362 4.1481 12 7 3.3873 -6.9227 5.2536 13 14 2.3415 -9.1348 3.9542 14 1 3.0499 -9.7059 2.7806 15 1 2.7289 -9.8813 5.1781 16 1 0.8749 -9.2471 3.7499 17 6 3.6697 -4.6160 1.0172 18 6 3.1829 -4.8582 -0.4129 19 6 3.6523 -6.0352 0.4459 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4427 0.0005 25 1 1.6765 1.9564 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 2.9173 -0.3306 1.4848 28 1 2.7590 -2.3574 0.1532 29 1 1.0872 -2.5186 0.7426 30 1 3.5918 -2.4537 2.4864 31 1 1.9203 -2.6151 3.0765 32 1 3.9778 -4.9153 3.5373 33 1 2.3255 -4.5460 4.0866 34 1 3.5729 -7.5516 5.9685 35 1 4.6403 -4.1363 1.1441 36 1 2.1133 -4.7686 -0.6024 37 1 3.8334 -4.5383 -1.2269 38 1 4.6114 -6.4891 0.1966 39 1 2.8918 -6.7197 0.8216 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:29 Heat of formation + Delta-G solvation = 5.081376 kcal Electronic energy + Delta-G solvation = -16012.877789 eV Core-core repulsion = 13569.247589 eV Total energy + Delta-G solvation = -2443.630200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.60312 -38.02270 -35.38216 -34.61602 -32.56944 -29.52708 -28.11633 -26.95497 -24.15601 -23.12638 -22.93480 -21.50349 -20.91424 -18.57873 -17.03228 -16.73263 -16.55209 -16.14951 -15.96624 -15.33330 -14.78769 -14.55878 -14.32506 -13.86740 -13.42254 -13.35197 -12.95751 -12.84625 -12.73318 -12.67779 -12.43622 -12.36683 -12.17504 -11.95487 -11.72743 -11.61184 -11.21110 -11.02521 -10.70378 -10.52008 -9.36057 -9.04621 -8.15031 -6.22946 1.42364 1.45344 1.52627 2.42134 2.91154 3.10031 3.17743 3.52094 4.03678 4.09224 4.16818 4.19358 4.26935 4.35488 4.47540 4.56512 4.63145 4.75763 4.84751 4.87672 4.94608 4.99639 5.00340 5.03128 5.11782 5.16416 5.22306 5.33128 5.36134 5.43850 5.47897 5.78613 6.10159 6.14627 6.40129 6.50259 6.65804 6.91657 7.44789 8.95922 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039899 B = 0.005579 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.599388 B = 5018.024054 C = 5281.608774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.695 5.695 5 C 0.087 3.913 6 C 0.066 3.934 7 N -0.515 5.515 8 C 0.211 3.789 9 C -0.507 4.507 10 H 0.072 0.928 11 C 0.000 4.000 12 N -0.939 5.939 13 Si 0.963 3.037 14 H -0.265 1.265 15 H -0.287 1.287 16 H -0.270 1.270 17 C 0.002 3.998 18 C -0.144 4.144 19 C -0.171 4.171 20 H 0.040 0.960 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.342 0.658 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.058 0.942 32 H -0.036 1.036 33 H -0.003 1.003 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 11.771 -12.835 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.033 4.033 3 C -0.205 4.205 4 N -0.328 5.328 5 C -0.043 4.043 6 C -0.063 4.063 7 N -0.239 5.239 8 C 0.085 3.915 9 C -0.545 4.545 10 H 0.090 0.910 11 C -0.197 4.197 12 N -0.581 5.581 13 Si 0.788 3.212 14 H -0.190 1.190 15 H -0.212 1.212 16 H -0.195 1.195 17 C -0.107 4.107 18 C -0.182 4.182 19 C -0.208 4.208 20 H 0.059 0.941 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.077 0.923 32 H -0.018 1.018 33 H 0.015 0.985 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.424 11.547 -12.545 17.222 hybrid contribution 1.525 -0.816 0.500 1.800 sum -0.899 10.731 -12.046 16.158 Atomic orbital electron populations 1.21789 0.94533 1.01279 1.02027 1.21575 0.96229 0.94985 0.90529 1.21928 1.00979 0.94543 1.03053 1.60444 1.33615 1.03248 1.35527 1.21674 1.00406 0.87038 0.95167 1.21949 0.98356 0.87592 0.98393 1.61778 1.46346 1.05899 1.09925 1.19353 0.92430 0.93789 0.85888 1.21514 1.37866 0.93134 1.02005 0.91003 1.25877 0.95384 1.03617 0.94871 1.70092 1.44304 1.36621 1.07044 0.85522 0.78925 0.79166 0.77558 1.18964 1.21219 1.19461 1.22170 0.93784 1.01284 0.93492 1.23054 1.01720 1.01491 0.91901 1.23116 1.03045 0.91657 1.03000 0.94104 0.92646 0.90937 0.94070 0.92388 0.90520 0.92027 0.83916 0.94477 0.91639 0.96332 0.92320 1.01826 0.98527 0.92945 0.91474 0.88943 0.86964 0.88838 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.41 71.98 0.68 -2.12 16 2 C 0.08 1.56 3.22 44.92 0.14 1.71 16 3 C -0.15 -2.31 9.18 71.98 0.66 -1.65 16 4 N -0.70 -17.66 6.31 -491.57 -3.10 -20.77 16 5 C 0.09 2.60 5.31 86.31 0.46 3.06 16 6 C 0.07 2.47 5.21 86.31 0.45 2.92 16 7 N -0.51 -22.71 4.58 -875.51 -4.01 -26.72 16 8 C 0.21 11.54 4.75 85.56 0.41 11.95 16 9 C -0.51 -28.67 7.82 25.60 0.20 -28.46 16 10 H 0.07 3.94 5.55 -2.91 -0.02 3.93 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 12 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 13 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 C 0.00 0.07 4.19 44.91 0.19 0.26 16 18 C -0.14 -4.44 9.31 30.62 0.29 -4.15 16 19 C -0.17 -6.44 9.41 30.62 0.29 -6.16 16 20 H 0.04 0.94 7.45 -2.39 -0.02 0.92 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.04 0.86 7.80 -2.39 -0.02 0.84 16 24 H 0.06 0.85 8.12 -2.38 -0.02 0.83 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.34 8.02 8.34 -89.69 -0.75 7.27 16 28 H 0.04 1.07 6.52 -2.39 -0.02 1.05 16 29 H 0.07 2.12 7.43 -2.39 -0.02 2.10 16 30 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 31 H 0.06 2.38 7.84 -2.39 -0.02 2.36 16 32 H -0.04 -2.16 8.02 -2.39 -0.02 -2.18 16 33 H 0.00 -0.20 7.76 -2.39 -0.02 -0.21 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.09 3.99 5.32 -2.39 -0.01 3.98 16 Total: -1.00 -63.20 310.05 -0.33 -63.53 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.25 Total: 16.74 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 4.22 Total: -22.22 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -6.83 Total: -104.64 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.20 -0.33 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.614 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds